| Downloads:
Software Downloads and Purchase. As part of the course work, you may find some of the freeware packages
below helpful in your research efforts. You are not required to use
them. They are provided for your assistance.
Graphics/Visualization Software:
GNUplot – Plotting Software -free download – http:// http://www.gnuplot.info/download.html
GSview, Ghostscript - Postscript/pdf viewers - free download - http://www.ghostgum.com.au/
High-dimensional data exploration with the Hierarchical Clustering Explorer 3.0 - http://www.cs.umd.edu/hcil/hce
Networks and Systems Analysis Software:
PathBlast - http://www.pathblast.org
Pajek - http://vlado.fmf.uni-lj.si/pub/networks/pajek/
Genomics/Phylogenetics:
Gene ontology with Treemap 4.0 - http://www.cs.umd.edu/hcil/treemap
Statistical Analysis Software:
R - Statistical Software Package - free download - http://www.r-project. org
Bioconductor - Microarray Analysis - free download - http://www.bioconductor.org
Time series data analysis with TimeSearcher - http://www.cs.umd.edu/hcil/timesearcher
Image Processing Software:
Image J – free download – http://rsb.info.nigh.gov/ij
UTHSCSA ImageTool – free download - http://ddsdx.uthscsa.edu/dig/itdesc.html
IRFANVIEW – free download – http://www.irfanview.com
Epidemiological Analysis Software:
Epi Info – free download – http://www.cdc.gov/epiinfo
Symbolic/Mathematical Analysis Software:
Pajek - Network Analysis Software - free download - http://vlado.fmf.uni-lj.si/pub/networks/pajek/
General Software Allercalc - Scientific Calculator - free download - http://www.allersoft.com
Adobe Acrobat Reader - http://www.adobe.com/support/downloads/main.html
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