2004 | 2003 | 2002 | 2001 | ≤2000

2004

• Bonchev, D. (2004) Complexity Analysis of Yeast Proteome Network, Chem. Biodiversity, 1 312-326.(download pdf)
  
  
• Bonchev, D. (2004) On the Complexity of Platonic Solids, Croat. Chem. Acta, 77 175-178.(download pdf)
  
  
• Bonchev, D. (2004) Periodicity of Chemical Elements and Nuclides: An Information Theoretical Analysis. To Appear In: Rouvray, D. H. and King, R. B. (eds.) Mathematics of Periodic Table. Nova, New York. (In Press) (download pdf)
  
  
• Bonchev, D. and Buck, G. A. (2004). Quantitative Measures of Network Complexity. To Appear In: Bonchev, D. and Rouvray, D. H. (eds.) Complexity in Chemistry, Biology, and Ecology. Springer, New York. (In Press) (download pdf)
  
  
• Bonchev, D., Dekmezian, A.H., Markel, E., and Faldi, A.(2003) Topology - Rheology Relationships for Monodisperse Linear and Branched Polyethylenes. J. Appl. Polymer Res., 90 2648-2656.
  
  
• Bonchev, D. and Rouvray, D. H., Eds.(2004). Complexity in Chemistry, Biology, and Ecology. Springer, New York. (In Press) (download pdf)
  
  
• Kier, L.B. and Witten, T.M. (2004). Cellular Automata Models of Complex Biochemical Systems. To Appear In: Bonchev, D. and Rouvray, D. (eds.) Complexity in Chemistry, Biology and Ecology. Springer, New York. (In Press) (download pdf)
  
  
• Mikulecky, D.C. (2004). The Circle That Never Ends: Can Complexity Be Made Simple? To Appear In: D. Bonchev and Rouvray, D. H. (eds.) Complexity in Chemistry, Biology, and Ecology. Springer, New York. (In Press) (download pdf)
  
  
• Puiu, D. Supercontigs: A Contig Scaffolding Tool, Computational Systems Bioinformatics CSB2204, Staford, CA; IEEE Computer Society: Los Aalamitos, 2004 (download pdf)
  
  
• Witten, T.M. (2004). More Adventures in Scale Generation Along a Wilsonian Path: Some Playful Thoughts. (download pdf)
  
  
  

2003

• Bonchev, D. and Rouvray, D. H. (eds.). (2003). Mathematical Chemistry. Vol. VII, Complexity in Chemistry. Taylor and Francis, London, U. K., 208 pp.
  
  
• Bonchev, D.(2003) On the Complexity of Directed Biological Networks. SAR QSAR Envir. Res. 14199-214.
  
  
• Bonchev, D. (2003) Shannon’s Information and Complexity. In: Mathematical Chemistry Series, Volume 7, “Complexity in Chemistry”, Bonchev, D. and Rouvray, D. H. (eds.), Taylor & Francis. p. 155-187.(download pdf)
  
  
• Bonchev, D. (2003) Complexity of Protein-Protein Interaction Networks, Complexes and Pathways, in Handbook of Proteomics Methods, M. Conn, (ed.) p. 451-462. Humana, New York. (download pdf)
  
  
• Bonchev, D. and Randić, M. (2003) Shannon’s Entropy of 2-D Gel Proteomic Maps. Chem. Phys. Lett. 372 548-552.
  
• Hassan, Sajida, Duong, Bao, Kim, Kwang-Soo, Miles, Michael, F.ndle, (2003). Pharmacogenomic Analysis of Mediating Ethanol Regulation of Dopamine ß-Hyudroxylase. J. of Biological Chemistry. (download pdf)
  


• Kier, L.B., Cheng, C.-K., & Testa, B. (2003). Studies of Ligand Diffusion over a Protein Surface. J. Chem. Inf. & Comput. Sci.
  
  
• McAlister V, Zou C, Winslow RH, Christie GE. (2003). Purification and In Vitro Characterization of the Serratia marcescens NucC Protein, a Zinc-Binding Transcription Factor Homologous to P2 Ogr. J Bacteriol.185:1808-1816.
  
  
• Shillady, D. D., Castevens, C.M., Trindle, C., Sulik, J., & Klonowski, P. (2003). Conformational Complexity of Melatonin in Water and Methanol. Biophysical Chemistry. (In Press)  (download pdf)
  
  
• Witten, T.M. (2003). Analysis of a Model for Aging CD4 and CD8 T-Cell Subsets with Aging. Applied Math Letters. (download pdf)
  
  
• Witten, T.M. (2003). A General Solution of the Time-Independent Forward Boltzmann Equation for High Energy He and Its Secondaries Through Bulk Matter. Applied Math Letters. (In Press) (download pdf) (download ps)
  
  
• Zhang, Li, Miles, Michael, F., Aldape, Kenneth, D.(2003). A model of molecular interactions on short oligonucleotide microarrays. Nature.  (download pdf)  

2002

• Christie GE, Temple LM, Bartlett BA, Goodwin TS. (2002) Programmed translational frameshift in the bacteriophage P2 FETUD tail gene operon. J Bacteriol. 184:6522-6531.
  
  
• Kier, L.B., Cheng, C.-K., & Testa, B. (2002). Cellular Automata Model of Ligand Passage over a Protein Hydrodynamic Landscape. J. Theoret. Biol., 215: 415-426.
  
  
• Kier, L.B., & Hall, L. H. (2002). The Meaning of Molecular Connectivity: A Bimolecular Accessibility Model. Croatia Chem. Acta., 75: 371-382.
  
  
• Testa, B., Kier, L. B., & Bojarski, A. (2002). Molecules and Meaning: How do Molecules Become Biochemical Signals. SEED., 2: 84-101.
  
  
• Testa, B., Kier, L.B., & Cheng, C.-K. (2002). A Cellular Automata Model of Water Structuring by a Chiral Solute. J. Chem. Inf. & Comput. Sci., 42: 712-716.  

2001

• Kier, L.B., Cheng, C.-K., & Seybold, P.G. (2001). Cellular Automata Models of Aqueous Solution Systems. Reviews in Computational Chemistry. K. B. Lipkowitz & D. B. Boyd (eds.). Vol. 17: 205-254.
  
  
• Mikulecky, D. C. (2001). Network Thermodynamics and Complexity: A Transition to Relational Systems Theory. Computers and Chemistry. Vol. 25: 369-391.
  
  
• Mikulecky, D. C. (2001). Robert Rosen (1934-1998): A Snapshot of Biology's Newton. Computers and Chemistry. Vol. 25: 317-327.
  
  
• Mikulecky, D. C. (2001). The Emergence of Complexity: Science Coming of Age or Science Growing Old? Computers and Chemistry. Vol. 25: 341-348.
  
  
• Testa, B., Kier, L. B., Cheng, C.-K., & Mayer, J. (2001). A Cellular Automata Study of Constraints (Dissolvence) in a Percolating Many-Particle System. Entropy., 3: 28-58.  

≤2000

• Kier, L. B., & Cheng, C.-K. (2000) A cellular automata model of an anticipatory system. J. Mol. Graphics Mod., 18: 29-32.
  
  
• Kier, L. B., & Cheng, C.-K., & Testa, B. (1999) A Cellular Automata Model of the Percolation Process J. Chem. Inf. Comput. Sci., 39:326-332.
  
  
• Kier, L. B., & Testa, B. (1995) Complexity and Emergence in Drug Research. Advances in Drug Research., 26: 1-43.
  
  
• Testa, B., & Kier, L. B. (2000) Emergence and Dissolvence in the Self-organisation of Complex Systems. Entropy., 2: 1-25.
  
  
• Testa, B., & Kier, L. B. (1997) The Concept of Emergence-Dissolvence in Drug Research. Advances in Drug Research., 30: 1-14.  
  
  

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