BLASTP 2.2.14 [May-07-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: K12 4285 sequences; 1,355,879 total letters Query= Z0001 thr operon leader peptide (thrL) {Escherichia coli O157:H7 EDL933} (27 letters) ***** No hits found ****** Query= Z0002 aspartokinase I, homoserine dehydrogenase I (thrA) {Escherichia coli O157:H7 EDL933} (820 letters) Score E Sequences producing significant alignments: (bits) Value b0002 aspartokinase I, homoserine dehydrogenase I (thrA) [2.7.2.... 1563 0.0 b3940 aspartokinase II and homoserine dehydrogenase II (metL) [2... 329 4e-091 b4024 aspartokinase III, lysine sensitive (lysC) [2.7.2.4] {Esch... 184 2e-047 >b0002 aspartokinase I, homoserine dehydrogenase I (thrA) [2.7.2.4] {Escherichia coli K12-MG1655} Length = 820 Score = 1563 bits (4046), Expect = 0.0 Identities = 804/820 (98%), Positives = 805/820 (98%) Query: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA Sbjct: 1 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDA 60 Query: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA Sbjct: 61 LPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINA 120 Query: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP Sbjct: 121 ALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIP 180 Query: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV Sbjct: 181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD Sbjct: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 Query: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF Sbjct: 301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360 Query: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL Sbjct: 361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL 420 Query: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQXXXXXXXXXXXXXXAL 480 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQ AL Sbjct: 421 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGAL 480 Query: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL Sbjct: 481 LEQLKRQQSWLKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRL 540 Query: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSR 600 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYH LR+AAEKSR Sbjct: 541 VKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSR 600 Query: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA Sbjct: 601 RKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLA 660 Query: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA Sbjct: 661 REMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMA 720 Query: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF Sbjct: 721 NLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAF 780 Query: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV Sbjct: 781 YSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV 820 >b3940 aspartokinase II and homoserine dehydrogenase II (metL) [2.7.2.4] {Escherichia coli K12-MG1655} Length = 810 Score = 329 bits (844), Expect = 4e-091 Identities = 242/821 (29%), Positives = 402/821 (48%), Gaps = 44/821 (5%) Query: 5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64 KFGG+S+A+ + +LRVA I+ ++ + V+SA TN L+ ++ + + + + + Sbjct: 16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74 Query: 65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALI 123 R + +L++GL A+ L + FV + GI+ D++ A ++ Sbjct: 75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVSDLERLAALLDSGIN------DAVYAEVV 126 Query: 124 CRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADH 183 GE S +M+ VL +G +D E L A + + E ++ H Sbjct: 127 GHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAER---AAQPQVDEGLSYPLLQQLLVQH 183 Query: 184 ---MVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240 +++ GF + N GE V+LGRNGSDYSA + A IW+DV GVY+ DPR+V Sbjct: 184 PGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243 Query: 241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300 DA LL + EA EL+ A VLH RT+ P++ +I ++ + P G++R Sbjct: 244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQ-----GSTRI 298 Query: 301 EDELP----VKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEY 356 E L + +++ +++ + P + + + RA++ + + + Sbjct: 299 ERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQ 358 Query: 357 SISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKF 416 + FC A + + E GL L + + LA++++VG G+ +F Sbjct: 359 LLQFCYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGVTRNPLHCHRF 411 Query: 417 FAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQXXXXXXXXXXXX 476 + L + Q S+ V+ + ++ HQ +F ++ Sbjct: 412 WQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFGKGNI 469 Query: 477 XXALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQAKEP 531 LE R+QS L + + + GV +S+ L + GL+ L + +E + E Sbjct: 470 GSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVEQDEE 529 Query: 532 FNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMDYYHL 591 L ++ + + V++D T+SQ +ADQY DF GFHV++ NK A S + Y Sbjct: 530 ----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSNKYRQ 585 Query: 592 LRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKLDEGM 651 + A EK+ R +LY+ VGAGLP+ +++L+++GD ++ SGI SG+LS++F + D + Sbjct: 586 IHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQFDGSV 645 Query: 652 SFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPAEFNA 711 F+E A + G TEPDPRDDLSG DV RKL+ILARE G +E + +E ++PA Sbjct: 646 PFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEG 705 Query: 712 EGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFKV 771 G + F N +L++ R+ AR+ G VLRYV D +G RV + V + PL + Sbjct: 706 -GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHPLASL 764 Query: 772 KNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812 +N A S +Y+ PLV+RG GAG DVTA + +D+ R Sbjct: 765 LPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805 >b4024 aspartokinase III, lysine sensitive (lysC) [2.7.2.4] {Escherichia coli K12-MG1655} Length = 449 Score = 184 bits (467), Expect = 2e-047 Identities = 142/471 (30%), Positives = 228/471 (48%), Gaps = 41/471 (8%) Query: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQ---- 58 V KFGGTSVA+ + R ADI+ S+A V VLSA A ITN LVA+ E G+ Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVRLV--VLSASAGITNLLVALAEGLEPGERFEK 63 Query: 59 -DALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCP-- 115 DA+ NI F + + + + +I+ +L I++L + Sbjct: 64 LDAIRNIQ-------------------FAILERLRYPNVIREEIERLLENITVLAEAAAL 104 Query: 116 ---DSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTR 172 ++ L+ GE MS + +L R D + + + + DIA Sbjct: 105 ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAE 164 Query: 173 RIAASRIPA--DHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVD 230 A +P + +V+ GF KG LGR GSDY+AA+LA L A +IWTDV Sbjct: 165 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVP 224 Query: 231 GVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQA 290 G+YT DPR V A+ + +++ EA E++ FGAKVLHP T+ P + IP + ++ +P+A Sbjct: 225 GIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRA 284 Query: 291 PGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT 350 GTL+ ++ E+ + ++ N + ++ M G A VF ++R ISV LIT Sbjct: 285 GGTLV-CNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT 343 Query: 351 QSSSEYSISFCVPQSDCV-RAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTL 409 +SE S++ + + + + + +EL L + V E LA+++++G+ + Sbjct: 344 --TSEVSVALTLDTTGSTSTGDTLLTQSLLMEL--SALCRVEVEEGLALVALIGNDLSKA 399 Query: 410 RGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLF 460 G+ + F L NI + I G+S ++ +V +DA V+ H LF Sbjct: 400 CGVGKEVFGVLEPFNIRM--ICYGASSHNLCFLVPGEDAEQVVQKLHSNLF 448 Query= Z0003 homoserine kinase (thrB) {Escherichia coli O157:H7 EDL933} (310 letters) Score E Sequences producing significant alignments: (bits) Value b0003 homoserine kinase (thrB) [2.7.1.39] {Escherichia coli K12-... 597 e-172 >b0003 homoserine kinase (thrB) [2.7.1.39] {Escherichia coli K12-MG1655} Length = 310 Score = 597 bits (1540), Expect = e-172 Identities = 296/310 (95%), Positives = 298/310 (96%) Query: 1 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVESAETFSLNNLGRFADKLPSEP 60 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVE+AETFSLNNLGRFADKLPSEP Sbjct: 1 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEP 60 Query: 61 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND 120 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND Sbjct: 61 RENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLND 120 Query: 121 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI 180 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI Sbjct: 121 TRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGI 180 Query: 181 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP 240 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP Sbjct: 181 KVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQPELAAKLMKDVIAEPYRERLLP 240 Query: 241 GFRQARQAVAEXXXXXXXXXXXXPTLFALCDKPDTAQRVADWLGKNYLQNQEGFVHICRL 300 GFRQARQAVAE PTLFALCDKP+TAQRVADWLGKNYLQNQEGFVHICRL Sbjct: 241 GFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVADWLGKNYLQNQEGFVHICRL 300 Query: 301 DTAGARVLEN 310 DTAGARVLEN Sbjct: 301 DTAGARVLEN 310 Query= Z0004 threonine synthase (thrC) {Escherichia coli O157:H7 EDL933} (428 letters) Score E Sequences producing significant alignments: (bits) Value b0004 threonine synthase (thrC) [4.2.99.2] {Escherichia coli K12... 815 0.0 >b0004 threonine synthase (thrC) [4.2.99.2] {Escherichia coli K12-MG1655} Length = 428 Score = 815 bits (2105), Expect = 0.0 Identities = 412/428 (96%), Positives = 412/428 (96%) Query: 1 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS Sbjct: 1 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60 Query: 61 AFIGDEIPQEILXXXXXXXXXXXXXXXNVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120 AFIGDEIPQEIL NVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH Sbjct: 61 AFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTH 120 Query: 121 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV Sbjct: 121 IAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETV 180 Query: 181 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQEARNQ 240 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQE RNQ Sbjct: 181 AIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQLPQETRNQ 240 Query: 241 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA 300 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA Sbjct: 241 LVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKATQATLSNA 300 Query: 301 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA 360 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA Sbjct: 301 MDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRA 360 Query: 361 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL 420 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL Sbjct: 361 LRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL 420 Query: 421 RKLMMNHQ 428 RKLMMNHQ Sbjct: 421 RKLMMNHQ 428 Query= Z0005 orf, hypothetical protein {Escherichia coli O157:H7 EDL933} (98 letters) Score E Sequences producing significant alignments: (bits) Value b0005 orf, hypothetical protein {Escherichia coli K12-MG1655} 91 2e-020 b2390 orf, hypothetical protein {Escherichia coli K12-MG1655} 58 1e-010 >b0005 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 98 Score = 90.5 bits (223), Expect = 2e-020 Identities = 45/68 (66%), Positives = 45/68 (66%) Query: 1 MKKMQSIXXXXXXXXXXPMATQAAEITLVPSVKLQIGDRDNRGYYXXXXXXXXXXXXKQH 60 MKKMQSI PMA QAAEITLVPSVKLQIGDRDNRGYY KQH Sbjct: 1 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQH 60 Query: 61 YEWRGNRW 68 YEWRGNRW Sbjct: 61 YEWRGNRW 68 >b2390 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 108 Score = 57.8 bits (138), Expect = 1e-010 Identities = 26/51 (50%), Positives = 32/51 (62%) Query: 18 PMATQAAEITLVPSVKLQIGDRDNRGYYXXXXXXXXXXXXKQHYEWRGNRW 68 P+A A EITL+PS+KLQIGDRD+ G Y ++YEWR NRW Sbjct: 16 PLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKNRW 66 Query= Z0006 orf, hypothetical protein (yaaA) {Escherichia coli O157:H7 EDL933} (258 letters) Score E Sequences producing significant alignments: (bits) Value b0006 orf, hypothetical protein (yaaA) {Escherichia coli K12-MG1... 510 e-146 >b0006 orf, hypothetical protein (yaaA) {Escherichia coli K12-MG1655} Length = 258 Score = 510 bits (1313), Expect = e-146 Identities = 256/258 (99%), Positives = 256/258 (99%) Query: 1 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN 60 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN Sbjct: 1 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGIN 60 Query: 61 AARFHDWQPDFTPENARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP 120 AARFHDWQPDFTP NARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP Sbjct: 61 AARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRP 120 Query: 121 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK 180 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK Sbjct: 121 LDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVK 180 Query: 181 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF 240 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF Sbjct: 181 PKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRFIIENRLTKPEQLTGFNSEGYFF 240 Query: 241 DEASSSNGELVFKRYEQR 258 DE SSSNGELVFKRYEQR Sbjct: 241 DEDSSSNGELVFKRYEQR 258 Query= Z0007 inner membrane transport protein (yaaJ) {Escherichia coli O157:H7 EDL933} (476 letters) Score E Sequences producing significant alignments: (bits) Value b0007 inner membrane transport protein (yaaJ) {Escherichia coli ... 885 0.0 >b0007 inner membrane transport protein (yaaJ) {Escherichia coli K12-MG1655} Length = 476 Score = 885 bits (2287), Expect = 0.0 Identities = 446/476 (93%), Positives = 447/476 (93%) Query: 1 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS 60 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS Sbjct: 1 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTS 60 Query: 61 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD 120 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD Sbjct: 61 FQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERD 120 Query: 121 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV 180 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV Sbjct: 121 VNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLV 180 Query: 181 TGXXXXXXXXXXXXRGLHGVARLMQGFVPLMAIIWVLTSLVICVINIGQLPHVIWSIFES 240 TG RGLHGVARLMQGFVPLMAIIWVLTSLVICV+NIGQLPHVIWSIFES Sbjct: 181 TGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLTSLVICVMNIGQLPHVIWSIFES 240 Query: 241 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTXXXXXXXXXXXXXXXXQGIVQM 300 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGST QGIVQM Sbjct: 241 AFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPNAAAAAASWPPHPAAQGIVQM 300 Query: 301 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA 360 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA Sbjct: 301 IGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAEFVTLVVILFA 360 Query: 361 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA 420 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA Sbjct: 361 FSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA 420 Query: 421 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSRDAWDDVSQE 476 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLS DAWDDVSQE Sbjct: 421 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE 476 Query= Z0008 transaldolase B (talB) {Escherichia coli O157:H7 EDL933} (317 letters) Score E Sequences producing significant alignments: (bits) Value b0008 transaldolase B (talB) [2.2.1.2] {Escherichia coli K12-MG1... 619 e-179 b2464 transaldolase A (talA) {Escherichia coli K12-MG1655} 406 e-115 b3946 putative transaldolase (talC) [2.2.1.-] {Escherichia coli ... 59 6e-010 b0825 putative transaldolase (mipB) {Escherichia coli K12-MG1655} 54 1e-008 >b0008 transaldolase B (talB) [2.2.1.2] {Escherichia coli K12-MG1655} Length = 317 Score = 619 bits (1597), Expect = e-179 Identities = 317/317 (100%), Positives = 317/317 (100%) Query: 1 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK 60 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK Sbjct: 1 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK 60 Query: 61 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN 120 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN Sbjct: 61 QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN 120 Query: 121 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG 180 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG Sbjct: 121 DAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVG 180 Query: 181 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD 240 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD Sbjct: 181 RILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCD 240 Query: 241 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR 300 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR Sbjct: 241 RLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIR 300 Query: 301 KFAIDQEKLEKMIGDLL 317 KFAIDQEKLEKMIGDLL Sbjct: 301 KFAIDQEKLEKMIGDLL 317 >b2464 transaldolase A (talA) {Escherichia coli K12-MG1655} Length = 316 Score = 406 bits (1044), Expect = e-115 Identities = 201/311 (64%), Positives = 240/311 (77%) Query: 3 DKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQ 62 ++L ++Q+TTVVAD+GDI +++ Y PQDATTNPSL+L AA + +Y LIDDA+AW K+ Sbjct: 2 NELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGLSQYEHLIDDAIAWGKKN 61 Query: 63 SNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDA 122 + QQ+V A DKLAVN G EILK+VPGR+STEVDARLS+D E SI KA+ L+ LY Sbjct: 62 GKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSFDKEKSIEKARHLVDLYQQQ 121 Query: 123 GISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI 182 G+ RILIKLASTW+GIRAAE+LEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI Sbjct: 122 GVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRI 181 Query: 183 LDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGCDRL 242 DWY+A Y EDPGV SV IY YYK+H YET+VMGASFR +IL L GCDRL Sbjct: 182 YDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYETIVMGASFRRTEQILALTGCDRL 241 Query: 243 TIAPALLKELAESEGAIERKLSYTGEVKARPARITESEFLWQHNQDPMAVDKLAEGIRKF 302 TIAP LLKEL E + RKL + RPA ++E+EF W+HNQD MAV+KL+EGIR F Sbjct: 242 TIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMSEAEFRWEHNQDAMAVEKLSEGIRLF 301 Query: 303 AIDQEKLEKMI 313 A+DQ KLE ++ Sbjct: 302 AVDQRKLEDLL 312 >b3946 putative transaldolase (talC) [2.2.1.-] {Escherichia coli K12-MG1655} Length = 220 Score = 58.5 bits (140), Expect = 6e-010 Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 25/166 (15%) Query: 101 LSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS 160 +S D + + +AKRL DA I++K+ T +G+ A + L+KEGI T ++S Sbjct: 61 MSRDAQGMVEEAKRL----RDA---IPGIVVKIPVTSEGLAAIKILKKEGITTLGTAVYS 113 Query: 161 FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYET 220 AQ A AG ++P+V R+ A D G+ +V E+ + H E+ Sbjct: 114 AAQGLLAALAGAKYVAPYVNRV------------DAQGGD-GIRTVQELQTLLEMHAPES 160 Query: 221 VVMGASFRNIGEILE--LAGCDRLTIAPALLKELAES---EGAIER 261 +V+ ASF+ + L+ LAGC+ +T+ + +++ + E AIE+ Sbjct: 161 MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEK 206 >b0825 putative transaldolase (mipB) {Escherichia coli K12-MG1655} Length = 244 Score = 54.3 bits (129), Expect = 1e-008 Identities = 59/249 (23%), Positives = 103/249 (41%), Gaps = 59/249 (23%) Query: 2 TDKLTSLRQYTTVVADTGDIAAMK----LYQPQDATTNPSLILNAAQIPEYRKLIDDAVA 57 +DK LR + DT D+ A+K ++ TTNPS+I +K +D + Sbjct: 15 SDKKYILRMVMELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAG------KKPLDVVLP 68 Query: 58 WAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIK 117 + + GR+ +V A + E + A +L Sbjct: 69 QLHEAMGGQ------------------------GRLFAQVMATTA---EGMVNDALKLRS 101 Query: 118 LYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISP 177 + D I++K+ T +G+ A + L+ EGI T ++ AQ A AG ++P Sbjct: 102 IIAD-------IVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAP 154 Query: 178 FVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILE-- 235 +V RI G+ +V++++Q K H + V+ ASF+ + L+ Sbjct: 155 YVNRI-------------DAQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCL 201 Query: 236 LAGCDRLTI 244 LAGC+ +T+ Sbjct: 202 LAGCESITL 210 Query= Z0009 required for the efficient incorporation of molybdate (mog) {Escherichia coli O157:H7 EDL933} (195 letters) Score E Sequences producing significant alignments: (bits) Value b0009 required for the efficient incorporation of molybdate into... 384 e-108 b0782 molybdopterin biosynthesis, protein B (moaB) {Escherichia ... 57 6e-010 >b0009 required for the efficient incorporation of molybdate into molybdoproteins (mog) {Escherichia coli K12-MG1655} Length = 195 Score = 384 bits (986), Expect = e-108 Identities = 195/195 (100%), Positives = 195/195 (100%) Query: 1 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE 60 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE Sbjct: 1 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCE 60 Query: 61 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV 120 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV Sbjct: 61 LVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQV 120 Query: 121 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV 180 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV Sbjct: 121 GVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEV 180 Query: 181 VAAFRPKSARRDVSE 195 VAAFRPKSARRDVSE Sbjct: 181 VAAFRPKSARRDVSE 195 >b0782 molybdopterin biosynthesis, protein B (moaB) {Escherichia coli K12-MG1655} Length = 170 Score = 57.4 bits (137), Expect = 6e-010 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 42 LETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGE 101 ++ ++ + + I + + +VL TGGTG D P+A L + DRE+ GFGE Sbjct: 45 VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGFGE 104 Query: 102 QMRQISLHFVPTAIL-SRQVGVIRKQALILNLPGQPKSIKETLEGV 146 R +S + T+ L SR V + + LI +PG K+ + E + Sbjct: 105 VFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENI 150 Query= Z0010 orf, hypothetical protein (yaaH) {Escherichia coli O157:H7 EDL933} (188 letters) Score E Sequences producing significant alignments: (bits) Value b0010 orf, hypothetical protein (yaaH) {Escherichia coli K12-MG1... 345 8e-097 >b0010 orf, hypothetical protein (yaaH) {Escherichia coli K12-MG1655} Length = 188 Score = 345 bits (886), Expect = 8e-097 Identities = 173/188 (92%), Positives = 173/188 (92%) Query: 1 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKK 60 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKK Sbjct: 1 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKK 60 Query: 61 GNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKG 120 GNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKG Sbjct: 61 GNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKG 120 Query: 121 ARVLQFVFFSLTVLFXXXXXXXXXXXXXXXHFAGWIGLICGASAIYLAMGEVLNEQFGRT 180 ARVLQFVFFSLTVLF HFAGWIGLICGASAIYLAMGEVLNEQFGRT Sbjct: 121 ARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRT 180 Query: 181 VLPIGESH 188 VLPIGESH Sbjct: 181 VLPIGESH 188 Query= Z0011 putative oxidoreductase {Escherichia coli O157:H7 EDL933} (237 letters) Score E Sequences producing significant alignments: (bits) Value b0011 putative oxidoreductase {Escherichia coli K12-MG1655} 374 e-105 >b0011 putative oxidoreductase {Escherichia coli K12-MG1655} Length = 237 Score = 374 bits (961), Expect = e-105 Identities = 196/237 (82%), Positives = 197/237 (83%) Query: 1 MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR 60 MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR Sbjct: 1 MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLMRNELFKSMEGHPEQHR 60 Query: 61 RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQ 120 RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQ Sbjct: 61 RNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKLKADKEMSTFEIEQQLLEQ 120 Query: 121 FLRNTWKKMDEEHKQEFLHAVDARVNXXXXXXXXXXXXXXXXXGVSHLLSSQLTRILRTH 180 FLRNTWKKMDEEHKQEFLHAVDARVN GVSHLLSSQLTRILRTH Sbjct: 121 FLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKLLAKGVSHLLSSQLTRILRTH 180 Query: 181 AAMSXXXXXXXXXXXXXXXXXXXXXXXKAVSGSSYRVTIPAVLQIACLRRMVSATQV 237 AAMS KAVSGS+YRVTIPAVLQIACLRRMVSATQV Sbjct: 181 AAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVTIPAVLQIACLRRMVSATQV 237 Query= Z0012 positive regulator for sigma 32 heat shock (htgA) {Escherichia coli O157:H7 EDL933} (206 letters) Score E Sequences producing significant alignments: (bits) Value b0012 positive regulator for sigma 32 heat shock promoters (htgA... 276 9e-076 >b0012 positive regulator for sigma 32 heat shock promoters (htgA) {Escherichia coli K12-MG1655} Length = 196 Score = 276 bits (705), Expect = 9e-076 Identities = 142/196 (72%), Positives = 144/196 (73%) Query: 1 MTALTXXXXXXXXXXXXXXXXXXXXXTLIAAWVRKMRVSWLESRCDTPFANNXXXXXXXX 60 MTALT TLIAAWVRKMRVSWLES+CDTPFANN Sbjct: 1 MTALTPFSAAPTGPPSPAPRSKPCPSTLIAAWVRKMRVSWLESKCDTPFANNLSFISSGS 60 Query: 61 XXXXXXXXXXXXCRNSCLCSSSIFFQVLRRXXXXXXXXXXXVDISLSAFSFNRFETSSKM 120 CRNSCLCSSSIFFQVLRR VDISLSAFSFNRFETSSKM Sbjct: 61 SSSSSFTLASTACRNSCLCSSSIFFQVLRRNCSSNCCSISNVDISLSAFSFNRFETSSKM 120 Query: 121 ARYNLPCPRSLLAILSPPKCCNSPAISCQLRRCCSGCPSIDLNSSLRISTLERRVLPFSL 180 ARYNLPCPRSLLAILSPPKCCNSPAISCQLRRCCSGCPSIDLNSSLRISTLERRVLPFSL Sbjct: 121 ARYNLPCPRSLLAILSPPKCCNSPAISCQLRRCCSGCPSIDLNSSLRISTLERRVLPFSL 180 Query: 181 WVSSRAKFANCSSLQC 196 WVS+RAKFANCSSLQC Sbjct: 181 WVSNRAKFANCSSLQC 196 Query= Z0013 orf, hypothetical protein (yaaI) {Escherichia coli O157:H7 EDL933} (134 letters) Score E Sequences producing significant alignments: (bits) Value b0013 orf, hypothetical protein (yaaI) {Escherichia coli K12-MG1... 260 2e-071 >b0013 orf, hypothetical protein (yaaI) {Escherichia coli K12-MG1655} Length = 134 Score = 260 bits (665), Expect = 2e-071 Identities = 132/134 (98%), Positives = 132/134 (98%) Query: 1 MKSVFTISASLAISLMLCCTAQANDHKLLGVIAMPRNETNALALKLPVCRIVKRIQLSAD 60 MKSVFTISASLAISLMLCCTAQANDHKLLG IAMPRNETN LALKLPVCRIVKRIQLSAD Sbjct: 1 MKSVFTISASLAISLMLCCTAQANDHKLLGAIAMPRNETNDLALKLPVCRIVKRIQLSAD 60 Query: 61 HGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTV 120 HGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTV Sbjct: 61 HGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININSDNDNKRCVSKITFSGHTV 120 Query: 121 NSSDMATLKIIGDD 134 NSSDMATLKIIGDD Sbjct: 121 NSSDMATLKIIGDD 134 Query= Z0014 chaperone Hsp70 DNA biosynthesis; autoregulated heat shock (dnaK) {Escherichia coli O157:H7 EDL933} (638 letters) Score E Sequences producing significant alignments: (bits) Value b0014 chaperone Hsp70; DNA biosynthesis; autoregulated heat shoc... 1137 0.0 b2526 heat shock protein, chaperone, member of Hsp70 protein fam... 412 e-116 b0650 putative dnaK protein (ybeW) {Escherichia coli K12-MG1655} 249 5e-067 b2069 putative heat shock protein (yegD) {Escherichia coli K12-M... 71 2e-013 b3251 regulator of ftsI, penicillin binding protein 3, septation... 54 2e-008 >b0014 chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins (dnaK) {Escherichia coli K12-MG1655} Length = 638 Score = 1137 bits (2940), Expect = 0.0 Identities = 589/601 (98%), Positives = 589/601 (98%) Query: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60 Query: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120 Query: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180 Query: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 Query: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300 Query: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360 Query: 361 PRKDVNPDEXXXXXXXXXXXXLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420 PRKDVNPDE LTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420 Query: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA Sbjct: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480 Query: 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD 540 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD Sbjct: 481 DGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGD 540 Query: 541 HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 600 HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME Sbjct: 541 HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLME 600 Query: 601 I 601 I Sbjct: 601 I 601 >b2526 heat shock protein, chaperone, member of Hsp70 protein family (hscA) {Escherichia coli K12-MG1655} Length = 616 Score = 412 bits (1058), Expect = e-116 Identities = 242/593 (40%), Positives = 353/593 (59%), Gaps = 24/593 (4%) Query: 6 GIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNT 65 GIDLGTTNS VA + L + EG PS++ Y Q G + VG A+ A + NT Sbjct: 23 GIDLGTTNSLVATVRSGQAETLADHEGRHLLPSVVHYQQQGHS-VGYDARTNAALDTANT 81 Query: 66 LFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKK 125 + ++KRL+GR D +Q+ +P++ A++NG +E + P ++SA++LK + Sbjct: 82 ISSVKRLMGRSLAD--IQQRYPHLPYQFQASENGLPMIETAAGLLNPVRVSADILKALAA 139 Query: 126 TAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGT 185 A + L + VITVPAYF+DAQRQ TKDA R+AGL V R++NEPTAAA+AYGLD G Sbjct: 140 RATEALAGELDGVVITVPAYFDDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQ 199 Query: 186 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 245 IAVYDLGGGTFDISI+ + FEVLAT GD+ LGG+DFD L +Y+ E+ Sbjct: 200 EG-VIAVYDLGGGTFDISILRLSR----GVFEVLATGGDSALGGDDFDHLLADYIREQ-- 252 Query: 246 KDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKL 305 GI R+D + L +AA AKI LS A VN+ A G +++R + Sbjct: 253 --AGIPDRSDNRVQRELLDAAIAAKIALSDADSVTVNV----AGWQG------EISREQF 300 Query: 306 ESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDV 365 L+ LV R++ + AL+DAG+ ++ +V++VGG TR+P+V+++V EFFG+ P + Sbjct: 301 NELIAPLVKRTLLACRRALKDAGVEADEVLEVVMVGGSTRVPLVRERVGEFFGRPPLTSI 360 Query: 366 NPDEXXXXXXXXXXXXLTGDVKD--VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHS 423 +PD+ L G+ D +LLLDV PLSLG+ETMGG++ +I +NTTIP + Sbjct: 361 DPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARA 420 Query: 424 QVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGI 483 Q F+T +D Q+A++IHV+QGER+ D +SL +F L GI P G I VTF +DADG+ Sbjct: 421 QDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAHIRVTFQVDADGL 480 Query: 484 LHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLL 543 L V+A +K++G E I +K S GL + EI M++D+ + AE D K L + + + +L Sbjct: 481 LSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVL 540 Query: 544 HSTRKQVEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQ 596 S + L A ++ I+ A L +G+D AIE ++ + + +Q Sbjct: 541 ESLHGALAADAALLSAAERQVIDDAAAHLSEVAQGDDVDAIEQAIKNVDKQTQ 593 >b0650 putative dnaK protein (ybeW) {Escherichia coli K12-MG1655} Length = 556 Score = 249 bits (635), Expect = 5e-067 Identities = 173/590 (29%), Positives = 297/590 (50%), Gaps = 65/590 (11%) Query: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64 IGIDLGTTNS +A+ +++ N G+ TPSII+ ++ LVG+PA + ++P Sbjct: 8 IGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIISMDENNHILVGKPAVSRRTSHPDK 67 Query: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMK 124 T KR +G + +D +A P++S+ VL+ +K Sbjct: 68 TAALFKRAMGSNTNWR-------------LGSDTFNA-----------PELSSLVLRSLK 103 Query: 125 KTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 184 + AE++L P+ + VI+VPAYF+D QR+ T+ A +AGL R+INEPTAAA+AYGL Sbjct: 104 EDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGLHTQ 163 Query: 185 TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEF 244 R++ V+DLGGGTFD++++E EV A+ GD LGGEDF L++ +++ Sbjct: 164 QNTRSL-VFDLGGGTFDVTVLEY----ATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRA 218 Query: 245 KKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAK 304 + ++ A+ EAA+ + Q+ +++ + + T + + Sbjct: 219 DVARTTLNESELAALYACVEAAK-------CSNQSPLHIRWQYQEET----RECEFYENE 267 Query: 305 LESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKD 364 LE L L+NR P++ AL+DA L S ID ++LVGG ++MP+VQ+ FGK P + Sbjct: 268 LEDLWLPLLNRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQS 327 Query: 365 VNPDE--XXXXXXXXXXXXLTGDVKDVLLLDVTPLSLGIET----MGGVMTTLIAKNTTI 418 +P + D+++V+L D+ P SLG+E + G+ + +I +NTT+ Sbjct: 328 YDPSTIVALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTV 387 Query: 419 PTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPR--GMPQIEVTF 476 P + +ST Q ++T++V QGE + +N + F++ P + I++ F Sbjct: 388 PVSRVETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDV----PLKKTGAYQSIDIRF 443 Query: 477 DIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTR 536 D +G+L V ++ + ++ + L+ +I++ A R Sbjct: 444 SYDINGLLEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPR--------- 494 Query: 537 NQGDHLLHSTRK-QVEEAGDKLPADDKTAIESALTALETALKGEDKAAIE 585 D L++ T K ++EE + D++ I +T + AL+ D A ++ Sbjct: 495 ---DMLINRTFKAKLEELWARALGDEREEIGRVITDFDAALQSNDMARVD 541 >b2069 putative heat shock protein (yegD) {Escherichia coli K12-MG1655} Length = 471 Score = 71.2 bits (173), Expect = 2e-013 Identities = 102/431 (23%), Positives = 174/431 (40%), Gaps = 92/431 (21%) Query: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64 IG D GT N VA+M P +L+ PS++ E + + V + Sbjct: 24 IGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLC-APTREAVSEWLYRHHDVPADDD 82 Query: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-----DNGDAWVEVKGQK-------MAP 112 A+ R R ++E++ + F + + D + W VK K + P Sbjct: 83 ETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEEVWF-VKSPKSFLGASGLKP 141 Query: 113 PQIS------AEVLKKMKKTAEDYLGEPVTEAVITVPAYF-----NDAQRQAT---KDAG 158 Q++ ++ +++ A+ L E +T+AVI P F ++A QA + A Sbjct: 142 QQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINFQGLGGDEANTQAQGILERAA 201 Query: 159 RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEI----------- 207 + AG EP AA L Y R + V D+GGGT D S++ + Sbjct: 202 KRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVV-DIGGGTTDCSLLLMGPQWRSRLDRE 260 Query: 208 -------------DEVDGEKTFE----VLATNGDTHLG-------------------GED 231 +++D F+ +L G+T G D Sbjct: 261 ASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEKGIALPILPWWNAVAINDVPAQSD 320 Query: 232 FDS----RLINYLVEEFKKDQGIDLRNDPLAMQ---RLKEAAEKAKIELSSAQQTDVNLP 284 F S RL+N LV + ++ + + L + RL +AE+ KI LSS +T +LP Sbjct: 321 FYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLSYRLVRSAEECKIALSSVAETRASLP 380 Query: 285 YITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQT 344 +I+ + +++ LES + + R +E +++AL +A D + L GG Sbjct: 381 FIS------NELATLISQRGLESALSQPLTRILEQVQLALDNA---QEKPDVIYLTGGSA 431 Query: 345 RMPMVQKKVAE 355 R P+++K +AE Sbjct: 432 RSPLIKKALAE 442 >b3251 regulator of ftsI, penicillin binding protein 3, septation function (mreB) {Escherichia coli K12-MG1655} Length = 367 Score = 54.3 bits (129), Expect = 2e-008 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 27/160 (16%) Query: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL- 181 +K+ + P ++ VP +R+A +++ + AG +I EP AAA+ GL Sbjct: 115 IKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLP 174 Query: 182 -DKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240 + TG+ V D+GGGT ++++I ++ V + +GG+ FD +INY+ Sbjct: 175 VSEATGS---MVVDIGGGTTEVAVISLNGV---------VYSSSVRIGGDRFDEAIINYV 222 Query: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTD 280 + G + AE+ K E+ SA D Sbjct: 223 RRNYGSLIG-------------EATAERIKHEIGSAYPGD 249 Query= Z0015 chaperone with DnaK heat shock protein (dnaJ) {Escherichia coli O157:H7 EDL933} (376 letters) Score E Sequences producing significant alignments: (bits) Value b0015 chaperone with DnaK; heat shock protein (dnaJ) {Escherichi... 569 e-164 b1000 curved DNA-binding protein; functions closely related to D... 80 2e-016 >b0015 chaperone with DnaK; heat shock protein (dnaJ) {Escherichia coli K12-MG1655} Length = 376 Score = 569 bits (1467), Expect = e-164 Identities = 290/376 (77%), Positives = 291/376 (77%) Query: 1 MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDXXXXXXXXXXXXXYEVLTDS 60 MAKQDYYEILGVSKTAEEREI+KAYKRLAMKYHPDRNQGD YEVLTDS Sbjct: 1 MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDS 60 Query: 61 QKRAAYDQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLRYN 120 QKRAAYDQY DLRYN Sbjct: 61 QKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGRQRAARGADLRYN 120 Query: 121 MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ 180 MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ Sbjct: 121 MELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQ 180 Query: 181 QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLXXXXXXXXXXXX 240 QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRL Sbjct: 181 QTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLAGEGEAGEHGAP 240 Query: 241 XXDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG 300 DLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG Sbjct: 241 AGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTG 300 Query: 301 KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNXXXXXXXXXXXXSFGGPTGEHNSPRS 360 KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN SFGGPTGEHNSPRS Sbjct: 301 KLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLNERQKQLLQELQESFGGPTGEHNSPRS 360 Query: 361 KSFFDGVKKFFDDLTR 376 KSFFDGVKKFFDDLTR Sbjct: 361 KSFFDGVKKFFDDLTR 376 >b1000 curved DNA-binding protein; functions closely related to DnaJ (cbpA) {Escherichia coli K12-MG1655} Length = 306 Score = 80.1 bits (196), Expect = 2e-016 Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 196 PCNKCHGHGRVERSKTLSVKIPAGVDTGDRIRLXXXXXXXXXXXXXXDLYVQVQVKQHPI 255 P G E KTL+VKIPAGV G RIRL DL++ + + HP+ Sbjct: 144 PVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPL 203 Query: 256 FEREGNNLYCEVPINFAMAALGGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRG 315 F+ G +L VP++ AALG ++ VPTL + L +P +Q G+ R++GKG+ S + Sbjct: 204 FDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK- 262 Query: 316 GAQGDLLCRVVVETP 330 GDL + + P Sbjct: 263 -QTGDLYAVLKIVMP 276 Score = 57.4 bits (137), Expect = 2e-009 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 1 MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDXXXXXXXXXXXXXYEVLTDS 60 M +DYY I+GV T + + IK AY+RLA KYHPD ++ + +EVL+D Sbjct: 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDE 59 Query: 61 QKRAAYDQ 68 Q+RA YDQ Sbjct: 60 QRRAEYDQ 67 Query= Z0016 Gef protein interferes with membrane function when (gef) {Escherichia coli O157:H7 EDL933} (69 letters) Score E Sequences producing significant alignments: (bits) Value b0018 Gef protein interferes with membrane function when in exce... 133 3e-033 b1562 polypeptide destructive to membrane potential (relF) {Esch... 82 7e-018 >b0018 Gef protein interferes with membrane function when in excess (gef) {Escherichia coli K12-MG1655} Length = 69 Score = 133 bits (334), Expect = 3e-033 Identities = 67/69 (97%), Positives = 67/69 (97%) Query: 1 MLNTCRVPLTDRKVKEKRAMKQHKVMIVALIVXCITAVVAALVTRKDLCEVHIRTGQTEV 60 MLNTCRVPLTDRKVKEKRAMKQHK MIVALIV CITAVVAALVTRKDLCEVHIRTGQTEV Sbjct: 1 MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEV 60 Query: 61 AVFTAYESE 69 AVFTAYESE Sbjct: 61 AVFTAYESE 69 >b1562 polypeptide destructive to membrane potential (relF) {Escherichia coli K12-MG1655} Length = 51 Score = 82.0 bits (201), Expect = 7e-018 Identities = 39/50 (78%), Positives = 43/50 (86%) Query: 20 MKQHKVMIVALIVXCITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 69 MKQ K M++ALIV C+T +V ALVTRKDLCEV IRTGQTEVAVFTAYE E Sbjct: 1 MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFTAYEPE 50 Query= Z0018 Na+/H antiporter, pH dependent (nhaA) {Escherichia coli O157:H7 EDL933} (388 letters) Score E Sequences producing significant alignments: (bits) Value b0019 Na+/H antiporter, pH dependent (nhaA) {Escherichia coli K1... 604 e-174 >b0019 Na+/H antiporter, pH dependent (nhaA) {Escherichia coli K12-MG1655} Length = 388 Score = 604 bits (1558), Expect = e-174 Identities = 318/388 (81%), Positives = 318/388 (81%) Query: 1 MKHLHRFFSSDASGGXXXXXXXXXXXXXXNSGATSGWYHDFLETPVQLRVGSLEINKNML 60 MKHLHRFFSSDASGG NSGATSGWYHDFLETPVQLRVGSLEINKNML Sbjct: 1 MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLETPVQLRVGSLEINKNML 60 Query: 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADP 120 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADP Sbjct: 61 LWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLAFNYADP 120 Query: 121 ITREGWAIPAATDIAFALGVLALLGSRVPLALKIFXXXXXXXXXXXXXXXXXXFYTNDLS 180 ITREGWAIPAATDIAFALGVLALLGSRVPLALKIF FYTNDLS Sbjct: 121 ITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLS 180 Query: 181 MXXXXXXXXXXXXXXXXXXCGVRRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK 240 M CG RRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK Sbjct: 181 MASLGVAAVAIAVLAVLNLCGARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLK 240 Query: 241 EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSXXXXXXXXXXXXXX 300 EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTS Sbjct: 241 EKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGK 300 Query: 301 XXXXSLFCWLALRLKLAHLPEGTTYQQIMAVGILCGIGFTMSIFIASLAFGSVDPELINW 360 SLFCWLALRLKLAHLPEGTTYQQIM VGILCGIGFTMSIFIASLAFGSVDPELINW Sbjct: 301 PLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINW 360 Query: 361 AKLGILVGSISSAVIGYSWLRVRLRPSV 388 AKLGILVGSISSAVIGYSWLRVRLRPSV Sbjct: 361 AKLGILVGSISSAVIGYSWLRVRLRPSV 388 Query= Z0019 transcriptional activator of nhaA (nhaR) {Escherichia coli O157:H7 EDL933} (301 letters) Score E Sequences producing significant alignments: (bits) Value b0020 transcriptional activator of nhaA (nhaR) {Escherichia coli... 608 e-175 b1988 nitrogen assimilation control protein (nac) {Escherichia c... 67 1e-012 b0338 cyn operon positive regulator (cynR) {Escherichia coli K12... 55 4e-009 b0603 putative transcriptional regulator LYSR-type (ybdO) {Esche... 54 1e-008 b1339 putative transcriptional regulator LYSR-type (ydaK) {Esche... 53 3e-008 >b0020 transcriptional activator of nhaA (nhaR) {Escherichia coli K12-MG1655} Length = 301 Score = 608 bits (1567), Expect = e-175 Identities = 300/301 (99%), Positives = 300/301 (99%) Query: 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL Sbjct: 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60 Query: 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVE 120 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVAD LSKRLVSSVLNAAVVE Sbjct: 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVE 120 Query: 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP Sbjct: 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180 Query: 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI Sbjct: 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240 Query: 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV Sbjct: 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300 Query: 301 R 301 R Sbjct: 301 R 301 >b1988 nitrogen assimilation control protein (nac) {Escherichia coli K12-MG1655} Length = 305 Score = 67.4 bits (163), Expect = 1e-012 Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 18/248 (7%) Query: 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65 +N+ L YF + GS+ AAE L++ ++ Q+ LE L +L R RG+ P++ Sbjct: 1 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA 60 Query: 66 GELVYRYADKMF-TLSQEMLDIVNYRKESNLLFDVGVA-DVLSKRLVSSVLNAAVVEGEP 123 G+++Y +A + Q L + N + + +G A + + +L A E Sbjct: 61 GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE 120 Query: 124 IHLRCFESTHEMLLEQLSQHKLDM--IISDCPI-----DSTQQEGLFSVRIGECGVSFWC 176 I + E++ +L E+L H+LDM I P+ + +E LF V +C Sbjct: 121 IVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDC------ 174 Query: 177 TNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAM 236 P + + + L +P S + ++ F+ + L +++GE + A + A A Sbjct: 175 ---PGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIAS 231 Query: 237 HNAIFVAP 244 + V P Sbjct: 232 GMGVAVLP 239 >b0338 cyn operon positive regulator (cynR) {Escherichia coli K12-MG1655} Length = 299 Score = 55.5 bits (132), Expect = 4e-009 Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 7/157 (4%) Query: 10 HLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELV 69 H+ YF V + GS AA AL+++ ++ QIR LEE L LF R GR + ++ GE+ Sbjct: 5 HINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVW 64 Query: 70 YRYADK----MFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIH 125 +YA + + + + D+ + + S + V + + ++ I Sbjct: 65 RQYASRALQELGAGKRAIHDVADLTRGS---LRIAVTPTFTSYFIGPLMADFYARYPSIT 121 Query: 126 LRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL 162 L+ E + E + + L + +LD+ I+ P+ S + E + Sbjct: 122 LQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAI 158 >b0603 putative transcriptional regulator LYSR-type (ybdO) {Escherichia coli K12-MG1655} Length = 300 Score = 54.3 bits (129), Expect = 1e-008 Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 4/156 (2%) Query: 3 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP 62 + + N L F +Y+ S+ AAE+LY+TP ++ ++ L + LF R G+G+ P Sbjct: 7 LKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAP 66 Query: 63 SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGE 122 + G ++ + +K ++ ++IVN + E F + ++S +S+L + + Sbjct: 67 TTTGLNLHHHLEKNLRGLEQTINIVN-KSELKKNFIIYGPQLISCS-NNSMLIRCLRQDS 124 Query: 123 PIHLRCFE--STHEMLLEQLSQHKLDMIISDCPIDS 156 + + C + + E E L K D++I+ P+ S Sbjct: 125 SVEIECHDILMSAENAEELLVHRKADLVITQMPVIS 160 >b1339 putative transcriptional regulator LYSR-type (ydaK) {Escherichia coli K12-MG1655} Length = 302 Score = 52.8 bits (125), Expect = 3e-008 Identities = 34/146 (23%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Query: 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65 + + + F V ++GS+ GA+ L ++ ++ I+ LEE L +LF R+ +G+ ++ Sbjct: 5 VKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDA 64 Query: 66 GELVYRYADKMF-TLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPI 124 GE Y++A + L DI + + ++G+ +S+ L+ +V++ + + Sbjct: 65 GESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQV 124 Query: 125 HLRCFESTHEMLLEQLSQHKLDMIIS 150 +R E ++ +L Q +LD I+ Sbjct: 125 KVRIMEGQLVSMINELRQGELDFTIN 150 Query= Z0020 orf Unknown function {Escherichia coli O157:H7 EDL933} (207 letters) ***** No hits found ****** Query= Z0021 orf Unknown function {Escherichia coli O157:H7 EDL933} (108 letters) ***** No hits found ****** Query= Z0022 putative usher protein {Escherichia coli O157:H7 EDL933} (816 letters) Score E Sequences producing significant alignments: (bits) Value b2109 putative outer membrane protein (yehB) {Escherichia coli K... 1003 0.0 b0139 probable outer membrane porin protein involved in fimbrial... 400 e-112 b4317 outer membrane protein; export and assembly of type 1 fimb... 374 e-104 b0532 putative outer membrane protein, export function (sfmD) {E... 328 9e-091 b0940 putative outer membrane protein (ycbS) {Escherichia coli K... 326 3e-090 b3144 putative outer membrane protein (yraJ) {Escherichia coli K... 311 1e-085 b3046 putative membrane protein (yqiG) {Escherichia coli K12-MG1... 234 2e-062 b0718 putative outer membrane protein (ybgQ) {Escherichia coli K... 224 2e-059 b2338 putative outer membrane protein (yfcU) {Escherichia coli K... 183 4e-047 b3216 putative outer membrane protein (yhcD) {Escherichia coli K... 120 5e-028 b1505 putative outer membrane protein {Escherichia coli K12-MG1655} 94 4e-020 b2337 putative outer membrane protein {Escherichia coli K12-MG1655} 46 9e-006 >b2109 putative outer membrane protein (yehB) {Escherichia coli K12-MG1655} Length = 826 Score = 1003 bits (2594), Expect = 0.0 Identities = 471/826 (57%), Positives = 620/826 (75%), Gaps = 10/826 (1%) Query: 1 MLRTTRWVAAII-FLYSFPGYA-EETFDTHFMIGGMKGEKVSEYHFDNKQPLPGNYELDF 58 MLR T +AI+ L YA EETFDTHFMIGGMK ++V+ D+ QPLPG Y++D Sbjct: 1 MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDI 60 Query: 59 YVNNQWRGKQDITIPESPVKPCLPKVLLTKLGVKTGNLNTEDNCILLDKAVHGGQYQWDI 118 YVN QWRGK +I + ++P + CL + ++ +LG+ + N + C+ ++ V GG Y WDI Sbjct: 61 YVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGKQCLTFEQLVQGGSYTWDI 120 Query: 119 SEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNLSQYRSYDSNNNSNTASYGRF 178 RL+ +VPQA++ ELE GYVPPE+W+RGI+AFYTSY LSQY S + +N ++Y RF Sbjct: 121 GVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYLSQYYSDYKASGNNKSTYVRF 180 Query: 179 NSGLNLFSWQLHSDASYSKPDDMKGTWQSNTLYLEHGWSQILSTVQIGENYTSSLIFDSL 238 NSGLNL WQLHSDAS+SK ++ G W+SNTLYLE G++Q+L T+++G+ YTSS IFDS+ Sbjct: 181 NSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSV 240 Query: 239 RFSGIRLFRDMQMLPDSMQSFTPLVQGVAQSNALITVSQNGYIIYQKEVPPGPFTIADLQ 298 RF G+RLFRDMQMLP+S Q+FTP VQG+AQSNAL+T+ QNG+++YQKEVPPGPF I DLQ Sbjct: 241 RFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQ 300 Query: 299 LSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAGRSKIYGVKNQEDFLE 358 L+G G+DLDVS+KEADGSV ++LVPY++VPNMLQPG+S +D AGRS I G Q DF++ Sbjct: 301 LAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASKQSDFVQ 360 Query: 359 AXXXXXXXXXXXXXXXXXXSDNYNAITLGNGWNTPLGAISFDATRSSSKLNNDITHEGTS 418 A ++NY A TLG GWNT +GAIS DAT+S SK +N +G S Sbjct: 361 AGYQYGFNNLLTLYGGSMVANNYYAFTLGAGWNTRIGAISVDATKSHSKQDNGDVFDGQS 420 Query: 419 YQVAYNKYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKINHQSDYDDFYDI------- 471 YQ+AYNK++ QT+TRF +AAWRY+S+DYRTF+DH++ N+K N++ D +D YDI Sbjct: 421 YQIAYNKFVSQTSTRFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDENDVYDIADYYQND 480 Query: 472 -GRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAKDYQFSYSNSWQRISYTFSASQ 530 GRKNS SAN+ Q L G+VSLS LWR+YWGRSG++KDYQ SYSN+ +RISYT +ASQ Sbjct: 481 FGRKNSFSANMSQSLPEGWGSVSLSTLWRDYWGRSGSSKDYQLSYSNNLRRISYTLAASQ 540 Query: 531 SYDENDKEEERFNLFISIPFYWGDDIAKTRHQINLSNSTSFSKDGYSSNNTGITGIAGEH 590 +YDEN EE+RFN+FISIPF WGDD++ R QI +SNST+F G++SNNTG++G G Sbjct: 541 AYDENHHEEKRFNIFISIPFDWGDDVSTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSR 600 Query: 591 DQLNYGIYVNQQQQNNDTSLGTNLSWRTPIATIDGSYSHSKNAWQSGGSISSGLVVWPGG 650 DQ NYG+ ++ Q Q N+T+ G NL+W P+AT++GSYS S Q+G S+S G+V W GG Sbjct: 601 DQFNYGVNLSHQHQGNETTAGANLTWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGG 660 Query: 651 INITNQLSDTFAILDAPGLEGAHINGQKYNRTNSKGQVVYDLMIPHRENHLVLDTANSES 710 +N+ N+LS+TFA+++APG++ A++NGQKY TN G V+YD M P+RENHL+LD + S+S Sbjct: 661 VNLANRLSETFAVMNAPGIKDAYVNGQKYRTTNRNGVVIYDGMTPYRENHLMLDVSQSDS 720 Query: 711 ETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQALRPDGSPLTFGYDVLDLQENNIGVV 770 E EL+GNR+I APYRGAV V F TDQRKPW+I+ALR DG LTFGY+V D+ +NIGVV Sbjct: 721 EAELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRADGQSLTFGYEVNDIHGHNIGVV 780 Query: 771 GQGSRLFIRVDEIPTGIKVALNDEQNLFCTITFQHVIDENKTYICQ 816 GQGS+LFIR +E+P + VA++ +Q L CTITF IDE++ YICQ Sbjct: 781 GQGSQLFIRTNEVPPSVNVAIDKQQGLSCTITFGKEIDESRNYICQ 826 >b0139 probable outer membrane porin protein involved in fimbrial assembly (htrE) {Escherichia coli K12-MG1655} Length = 865 Score = 400 bits (1029), Expect = e-112 Identities = 263/844 (31%), Positives = 425/844 (50%), Gaps = 43/844 (5%) Query: 5 TRWVAAIIFLYSFPGYAEETFD-THFMIGGMKGEKVSEYHFDNKQP-LPGNYELDFYVNN 62 TR LY ++ E + H + G + + P +PG Y++ YVN+ Sbjct: 13 TRIATFCALLYCNTAFSAELVEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVND 72 Query: 63 QWRGKQDITIP----ESPVKPCLPKVLLTKLGVKTGNLNTED-----------NCILLDK 107 Q Q IT + + C+ L + + + ++N E NC+ L + Sbjct: 73 QPIINQSITFVAIEGKKNAQACITLKNLLQFHINSPDINNEKAVLLARDETLGNCLNLTE 132 Query: 108 AVHGGQYQWDISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNLSQYRSYDSN 167 + ++D+++ RL++ VPQA++ + + YV P W+ GI+A SYNL+ Y S ++ Sbjct: 133 IIPQASVRYDVNDQRLDIDVPQAWVMKNYQNYVDPSLWENGINAAMLSYNLNGYHS-ETP 191 Query: 168 NNSNTASYGRFNSGLNLFSWQLHSDASYSKPDDMKGTWQSNTLYLEHGWSQILSTVQIGE 227 N + Y FN G+NL +W+L + +Y+ D + Y++ + + S + +GE Sbjct: 192 GRKNESIYAAFNGGMNLGAWRLRASGNYNWMTDSGSNYDFKNRYVQRDIASLRSQLILGE 251 Query: 228 NYTSSLIFDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVAQSNALITVSQNGYIIYQKEV 287 +YT+ FDS+ GIRL+ D +MLP ++ SF P++ GVA +NA +T++Q GY IY+ V Sbjct: 252 SYTTGETFDSVSIRGIRLYSDSRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIYETTV 311 Query: 288 PPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAGRSKI 347 PPG F I DL SG GSDL V+I+E+DGS R+F P+SSV ML+PG+ +D G+ Sbjct: 312 PPGAFVIDDLSPSGYGSDLIVTIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQVLK 371 Query: 348 YGVKNQEDFLEAXXXXXXXXXXXXXXXXXXSD-NYNAITLGNGWNTPLGAISFDATRSSS 406 ++++ + +A +D NY A LG G NT +GA SFD T S+ Sbjct: 372 DDIQDEPNLFQASYYYGLNNYLTGYTGIQITDNNYTAGLLGLGLNTSVGAFSFDVTHSNV 431 Query: 407 KLNNDITHEGTSYQVAYNKYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKINH-QSDY 465 ++ +D T++G SY+V++NK +T+T ++AA+RY++Q+Y +D L D++ H + D Sbjct: 432 RIPDDKTYQGQSYRVSWNKLFEETSTSLNIAAYRYSTQNYLGLNDALTLIDEVKHPEQDL 491 Query: 466 D--DFYDIGR-KNSLSANIMQPL---SNNLGNVSLSALWRNYWGRSGNAKDYQFSYSNSW 519 + + R KN ++ +I QPL + G+ LS W +YW N +Y YSNS Sbjct: 492 EPKSMRNYSRMKNQVTVSINQPLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNST 551 Query: 520 QRISYTFSASQSYDENDKEEERFNLFISIPFYWGDDIAKTRHQIN--LSNSTSFSKDGYS 577 SY+ SA +S++E+ ++ L +IP + + T + + S T S D + Sbjct: 552 SWGSYSVSAQRSWNEDGDTDDSVYLSFTIPI---EKLLGTEQRTSGFQSIDTQISSD-FK 607 Query: 578 SNNTGITGIAGEHDQLNYGIYVNQQQQNNDTS-----LGTNLSWRTPIATIDGSYS-HSK 631 NN +G D VN N S +G S+ +P T+ GS S +S Sbjct: 608 GNNQLNVSSSGYSDNARVSYSVNTGYTMNKASKDLSYVGGYASYESPWGTLAGSISANSD 667 Query: 632 NAWQSGGSISSGLVVWPGGINITNQL---SDTFAILDAPGLEGAHINGQKYNRTNSKGQV 688 N+ Q S G V+ GG+ +N SDT A++ APG +GA IN + + G Sbjct: 668 NSRQVSLSTDGGFVLHSGGLTFSNDSFSDSDTLAVVQAPGAQGARIN-YGNSTIDRWGYG 726 Query: 689 VYDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQALRP 748 V + P+ EN + LD + E++ EL+ + P +G+V + F T Q + + R Sbjct: 727 VTSALSPYHENRIALDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAIMNITRS 786 Query: 749 DGSPLTFGYDVLDLQENNIGVVGQGSRLFIRVDEIPTGIKVA-LNDEQNLFCTITFQHVI 807 DG + F D+ D Q N IG VGQG + F+R E I + L + + C +Q Sbjct: 787 DGKNIPFAADIYDEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLEQSKPVSCLAHYQQSP 846 Query: 808 DENK 811 + K Sbjct: 847 EAEK 850 >b4317 outer membrane protein; export and assembly of type 1 fimbriae, interrupted (fimD) {Escherichia coli K12-MG1655} Length = 878 Score = 374 bits (960), Expect = e-104 Identities = 236/797 (29%), Positives = 388/797 (48%), Gaps = 39/797 (4%) Query: 44 FDNKQPLP-GNYELDFYVNNQWRGKQDITI----PESPVKPCLPKVLLTKLGVKTG---- 94 F+N Q LP G Y +D Y+NN + +D+T E + PCL + L +G+ T Sbjct: 67 FENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPCLTRAQLASMGLNTASVAG 126 Query: 95 -NLNTEDNCILLDKAVHGGQYQWDISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFY 153 NL +D C+ L V D+ + RLNLT+PQA+++ RGY+PPE WD GI+A Sbjct: 127 MNLLADDACVPLTTMVQDATAHLDVGQQRLNLTIPQAFMSNRARGYIPPELWDPGINAGL 186 Query: 154 TSYNLSQYRSYDSNNNSNTASYGRFNSGLNLFSWQLHSDASYS-----KPDDMKGTWQSN 208 +YN S + ++ +Y SGLN+ +W+L + ++S + K WQ Sbjct: 187 LNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSDRSSGSKNKWQHI 246 Query: 209 TLYLEHGWSQILSTVQIGENYTSSLIFDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVAQ 268 +LE + S + +G+ YT IFD + F G +L D MLPDS + F P++ G+A+ Sbjct: 247 NTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQLASDDNMLPDSQRGFAPVIHGIAR 306 Query: 269 SNALITVSQNGYIIYQKEVPPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVP 328 A +T+ QNGY IY VPPGPFTI D+ +G+ DL V+IKEADGS + F VPYSSVP Sbjct: 307 GTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGDLQVTIKEADGSTQIFTVPYSSVP 366 Query: 329 NMLQPGISNFDFIAGRSKIYGVKNQED-FLEAXXXXXXXXXXXXXXXXXXSDNYNAITLG 387 + + G + + AG + + ++ F ++ +D Y A G Sbjct: 367 LLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTLLHGLPAGWTIYGGTQLADRYRAFNFG 426 Query: 388 NGWNT-PLGAISFDATRSSSKLNNDITHEGTSYQVAYNKYLVQTATRFSVAAWRYASQDY 446 G N LGA+S D T+++S L +D H+G S + YNK L ++ T + +RY++ Y Sbjct: 427 IGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSLNESGTNIQLVGYRYSTSGY 486 Query: 447 RTFSDHLY----------ENDKINHQSDYDDFYDI--GRKNSLSANIMQPLSNNLGNVSL 494 F+D Y ++ I + + D+Y++ ++ L + Q L + L Sbjct: 487 FNFADTTYSRMNGYNIETQDGVIQVKPKFTDYYNLAYNKRGKLQLTVTQQLGRT-STLYL 545 Query: 495 SALWRNYWGRSGNAKDYQFSYSNSWQRISYTFSASQSYDENDK-EEERFNLFISIPF-YW 552 S + YWG S + +Q + +++ I++T S S + + K ++ L ++IPF +W Sbjct: 546 SGSHQTYWGTSNVDEQFQAGLNTAFEDINWTLSYSLTKNAWQKGRDQMLALNVNIPFSHW 605 Query: 553 --GDDIAKTRHQINLSNSTSFSKDGYSSNNTGITGIAGEHDQLNYGI---YVNQQQQNND 607 D ++ RH + S S S +G +N G+ G E + L+Y + Y N+ Sbjct: 606 LRSDSKSQWRH-ASASYSMSHDLNGRMTNLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSG 664 Query: 608 TSLGTNLSWRTPIATIDGSYSHSKNAWQSGGSISSGLVVWPGGINITNQLSDTFAILDAP 667 ++ L++R + YSHS + Q +S G++ G+ + L+DT ++ AP Sbjct: 665 STGYATLNYRGGYGNANIGYSHSDDIKQLYYGVSGGVLAHANGVTLGQPLNDTVVLVKAP 724 Query: 668 GLEGAHINGQKYNRTNSKGQVVYDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGA 727 G + A + Q RT+ +G V +REN + LDT +L + P RGA Sbjct: 725 GAKDAKVENQTGVRTDWRGYAVLPYATEYRENRVALDTNTLADNVDLDNAVANVVPTRGA 784 Query: 728 VSYVQFTTDQRKPWYIQALRPDGSPLTFGYDVLDLQENNIGVVGQGSRLFIRVDEIPTGI 787 + +F + + L + PL FG V + G+V ++++ + + Sbjct: 785 IVRAEFKA-RVGIKLLMTLTHNNKPLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKV 843 Query: 788 KVALNDEQNLFCTITFQ 804 +V +E+N C +Q Sbjct: 844 QVKWGEEENAHCVANYQ 860 >b0532 putative outer membrane protein, export function (sfmD) {Escherichia coli K12-MG1655} Length = 867 Score = 328 bits (841), Expect = 9e-091 Identities = 239/835 (28%), Positives = 388/835 (46%), Gaps = 61/835 (7%) Query: 9 AAIIFLYSFPGYAEETFDTHFMI-GGMKGEKVSEYHFDNKQPLPGNYELDFYVNNQWRGK 67 +++ L SF YAE F+ F++ G +S + N QP G Y +D + N+++ G Sbjct: 23 SSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPA-GVYRVDLWRNDEFIGS 81 Query: 68 QDITIPESP---------VKPCLPKVLLTKLGVKTGNL-----NTEDNCILLDKAVHGGQ 113 QDI + + PC +VLL ++G+ + + CI L KAV Sbjct: 82 QDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDAT 141 Query: 114 YQWDISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNLSQYRSYDSNNNSNTA 173 +D + RLN+T+PQ + GY+PPE WD GI A +YN + R N N + Sbjct: 142 INFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-----NGNDS 196 Query: 174 SYGRFNSGLNLFSWQLHSDASYSKPDDMKGT------WQSNTLYLEHGWSQILSTVQIGE 227 + SG+N+ W+L ++ S++ +G W + +++ + S + +G+ Sbjct: 197 YFFSELSGINIGPWRLRNNGSWNY---FRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGD 253 Query: 228 NYTSSLIFDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVAQSNALITVSQNGYIIYQKEV 287 T S IFD + F G+RL+ M PDS Q F P V+G+A++ A +T+ QNG+IIYQ V Sbjct: 254 GNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYV 313 Query: 288 PPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAGRSKI 347 PG F I DL + S DLDV+I E DG+ +++ +PYS+VP + + G FD AG + Sbjct: 314 SPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR- 372 Query: 348 YGVKNQED--FLEAXXXXXXXXXXXXXXXXXXSDNYNAITLGNGWNT-PLGAISFDATRS 404 G Q F + S NY A LG G N GA+S D T + Sbjct: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432 Query: 405 SSKLNNDITHEGTSYQVAYNKYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKINHQSD 464 S+L + HEG S + Y K + T F + +RY++Q + T D Y + ++ D Sbjct: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME-GYEYD 491 Query: 465 YD----------DFYDI--GRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAKDYQ 512 YD +++++ RK+ L N+ Q L N+ G++ +S + YW S + YQ Sbjct: 492 YDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTSDSDTWYQ 550 Query: 513 FSYSNSWQRISYTFSASQSYDENDKEEERF-NLFISIPFYWGDDIAKTRH-------QIN 564 Y++SW ISY+ S S + + ER L +S+PF + + K R+ + Sbjct: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPF---NVLTKRRYTRENALDRAY 607 Query: 565 LSNSTSFSKDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLGTNLSWRTPIATID 624 S + + + +G +S G+ G E L+Y + N T T +W+ T+ Sbjct: 608 ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSAT-ANWQAAYGTLG 666 Query: 625 GSYSHSKNAWQSGGSISSGLVVWPGGINITNQLSDTFAILDAPGLEGAHINGQKYNRTNS 684 G Y++ ++ +S G+V GI ++ L DT ++ APG G I Q T+ Sbjct: 667 GGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDW 726 Query: 685 KGQVVYDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQ 744 +G V +R N + LDT + +++ N + P +GA+ F T I Sbjct: 727 RGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALI- 785 Query: 745 ALRPDGSPLTFGYDVLDLQENNIGVVGQGSRLFIRVDEIPTGIKVALNDEQNLFC 799 + G P+ FG V + +VG ++++ + + V D N C Sbjct: 786 TVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRC 840 >b0940 putative outer membrane protein (ycbS) {Escherichia coli K12-MG1655} Length = 866 Score = 326 bits (836), Expect = 3e-090 Identities = 229/831 (27%), Positives = 387/831 (46%), Gaps = 54/831 (6%) Query: 16 SFPGYAEETFDTHF------MIGGM----KGEKVSEYHFDNKQPLPGNYELDFYVNNQWR 65 +F AE FD F M+ + KG+K++ PG Y +D +N Sbjct: 30 AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKIT----------PGVYRVDIVLNQTIV 79 Query: 66 GKQDITI----PESPVKPCLPKVLLTKLGVKTGNLNT-----EDNCILLDKAVHGGQYQW 116 +++ PE + CL L +GV T + C+ L + + + Sbjct: 80 DTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTF 139 Query: 117 DISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNLSQYRSYDSNNNSNTAS-- 174 ++++ RL ++VPQ I RGYVPPE WD GI+A Y+ S S S+ +S++ Sbjct: 140 NVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSY 199 Query: 175 YGRFNSGLNLFSWQLHSDASYSKPDDMKGTWQSNTLYLEHGWSQILSTVQIGENYTSSLI 234 + NSG+NL W+L +++++S+ W++ + YL+ + + +G++YT+ Sbjct: 200 FLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYTAGDF 259 Query: 235 FDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVAQSNALITVSQNGYIIYQKEVPPGPFTI 294 FDS+ F G++L D MLPDS++ F P+V+G+A+SNA IT+ QNGY IYQ V PG F I Sbjct: 260 FDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEI 319 Query: 295 ADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAGRSKIYGVKNQE 354 +DL + S DL V IKEADGSV S+ VP+SSVP + + G + + + + QE Sbjct: 320 SDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQE 379 Query: 355 D-FLEAXXXXXXXXXXXXXXXXXXSDNYNAITLGNGWNT-PLGAISFDATRSSSKLNNDI 412 F +A ++ Y A G G+N GAISFDAT++ S L + Sbjct: 380 SKFAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQS 439 Query: 413 THEGTSYQVAYNKYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKINHQSDYDD----- 467 H+G SY+ Y K L T F + +RY++ + T SD +Y++ +D DD Sbjct: 440 EHKGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGDDEDTPM 499 Query: 468 ---FYDI--GRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAKDYQFSYSNSWQRI 522 +Y++ ++ L NI Q L G+ LS + YW + QF Y+ + + Sbjct: 500 WSRYYNLFYTKRGKLQVNISQQL-GEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDL 558 Query: 523 SYTFSASQSYDENDKEEER-FNLFISIPFYW-----GDDIAKTRHQINLSNSTSFSKDGY 576 S S + S + ++ F L S+P D + ++ ++++TS +G+ Sbjct: 559 SLGISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGH 618 Query: 577 SSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLGTNLSWRTPIATIDGSYSHSKNAWQS 636 ++ N G+T + L+Y + + + ++ ++ A Y++S N Q Sbjct: 619 TTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 678 Query: 637 --GGSISSGLVVWPGGINITNQLSDTFAILDAPGLEGAHINGQKYNRTNSKGQVVYDLMI 694 ++S LV GI + L +T ++ APG E + +T+ +G V Sbjct: 679 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 738 Query: 695 PHRENHLVLDTANSESETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQALRPDGSPLT 754 +REN + LD A+ + +L+ + P +GA+ +F ++ + G PL Sbjct: 739 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSK-QGIPLR 797 Query: 755 FG-YDVLDLQENNIGVVGQGSRLFIRVDEIPTGIKVALNDEQNLFCTITFQ 804 FG LD + N G++ L++ I V + + C I ++ Sbjct: 798 FGAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYE 848 >b3144 putative outer membrane protein (yraJ) {Escherichia coli K12-MG1655} Length = 838 Score = 311 bits (797), Expect = 1e-085 Identities = 205/774 (26%), Positives = 373/774 (48%), Gaps = 36/774 (4%) Query: 21 AEETFDTHFMI----GGMKGEKVSEYHFDNKQPLPGNYELDFYVNNQWRGKQDITIP--- 73 AEE + M+ GM+ +S + Q LPG Y++D ++N + ++ IT Sbjct: 40 AEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQ-LPGTYQVDIWLNKKKVSQKKITFTANA 98 Query: 74 ESPVKPCLPKVLLTKLGVKTGNL----NTEDNCIL--LDKAVHGGQYQWDISEHRLNLTV 127 E ++P L +LG+K + +D+ ++ L++ + G ++D + +LNL++ Sbjct: 99 EQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSI 158 Query: 128 PQAYINELERGYVPPESWDRGIDAFYTSYNLSQYRSYDSNNNSNTASYGRFNSGLNLFSW 187 PQ + RGYV P WD GI +T+Y+ + + N + Y +G N W Sbjct: 159 PQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPW 218 Query: 188 QLHSDASYSKPDDMKGTWQSNTLYLEHGWSQILSTVQIGENYTSSLIFDSLRFSGIRLFR 247 +L + +++++ +D +W + + YL+ + S + +GE+ TS IF S F+G++L Sbjct: 219 RLRNYSTWTR-NDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLAS 277 Query: 248 DMQMLPDSMQSFTPLVQGVAQSNALITVSQNGYIIYQKEVPPGPFTIADLQLSGSGSDLD 307 D MLP+S + F P V+G+A S+A++T+ QNGY+IYQ V G F I DL S + DL+ Sbjct: 278 DDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLE 337 Query: 308 VSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAG--RSKIYGVKNQEDFLEAXXXXXX 365 V+I+E+DG+ R F+ PYSS+P M +PG + AG R+ + +F EA Sbjct: 338 VTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGL 397 Query: 366 XXXXXXXXXXXXSDNYNAITLGNGWNT-PLGAISFDATRSSSKLNNDITHEGTSYQVAYN 424 S++Y A+ +G G LGA+S D R+ ++ +N + G ++ Y Sbjct: 398 NNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYI 457 Query: 425 KYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKINHQSDYDDFYDIGRKNSLSANIMQP 484 K + +T T +V+ +RY + Y +F++ N +D Y+ +K+ + NI Q Sbjct: 458 KDIPETNTNIAVSYYRYTNDGYFSFNEANTRN--------WD--YNSRQKSEIQFNISQT 507 Query: 485 LSNNLGNVSLSALWRNYWGRSGNAKDYQFSYSNSWQRISYTFSASQSYDENDKEEERFNL 544 + + + ++ S ++YWG + ++ S + Y+ + S + + +L Sbjct: 508 IFDGV-SLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNNDRALSL 566 Query: 545 FISIPFYWGDDIAKTRHQINLSNSTSFSKDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQ 604 +SIP + + + +S + KD + + + G + +L+Y + + Sbjct: 567 NLSIP------LERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDD 620 Query: 605 NNDTSLGTNLSWRTPIATIDGSYSHSKNAWQSGGSISSGLVVWPGGINITNQLSDTFAIL 664 NN S N S+R+P T YS+ ++ Q ++ G+V+ P G+ ++ L + FA++ Sbjct: 621 NNHNS-SLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALI 679 Query: 665 DAPGLEGAHINGQKYNRTNSKGQVVYDLMIPHRENHLVLDTANSESETELQGNRQIIAPY 724 DA G G I T+ G V + ++EN L +DT +L+ Q + P Sbjct: 680 DANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPN 739 Query: 725 RGAVSYVQFTTDQRKPWYIQALRPDGSPLTFGYDVLDLQENNIGVVGQGSRLFI 778 RGA+ +F + + +G PL FG + +V +G L++ Sbjct: 740 RGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYL 793 >b3046 putative membrane protein (yqiG) {Escherichia coli K12-MG1655} Length = 821 Score = 234 bits (597), Expect = 2e-062 Identities = 213/793 (26%), Positives = 359/793 (45%), Gaps = 79/793 (9%) Query: 39 VSEYHFDNKQPLPGNYELDFYVNN---------QWRGKQDITIPESPVKPCLPKVLLTKL 89 +S++ D + P+ G Y L +NN QW + ++ C+ LT L Sbjct: 38 LSQFETDGQLPV-GKYSLSTLINNKRTPIHLDLQW------VLIDNQTAVCVTPEQLTLL 90 Query: 90 G-----VKTGNLNTEDNCILLDKAVHGGQYQWDISEHRLNLTVPQAYINELERGYVPPES 144 G ++ N D C ++K Y +D + +L++ PQA++ + + PPE Sbjct: 91 GFTDEFIEKTQQNLIDGCYPIEKEKQITTY-FDKGKMQLSIFAPQAWLKYKDANWTPPEL 149 Query: 145 WDRGIDAFYTSYNL--SQYRSYDSNNNSNTASYGRFNSGLNLFSWQLHSDASYSKPDDMK 202 W+ GI + YNL S Y + +N+ N +SYG+ +G+NL +W+L +D Y + + Sbjct: 150 WNHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQ--AGVNLGAWRLRTDYQYDQSFNNG 207 Query: 203 GTWQSNT----LYLEHGWSQILSTVQIGENYTSSLIFDSLRFSGIRLFRDMQMLPDSMQS 258 + +N +YL + + + IG+ T S IFDS FSGI L D MLP ++ Sbjct: 208 KSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTESSIFDSFHFSGISLKSDENMLPPDLRG 267 Query: 259 FTPLVQGVAQSNALITVSQNGYIIYQKEVPPGPFTIADLQLSGSGSDLDVSIKEADGSVR 318 + P + GVAQ+NA +TVSQN IIYQ+ VPPGPF I +L + G LDV ++E DG V Sbjct: 268 YAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQG-QLDVKVEEEDGRVT 326 Query: 319 SFLVPYSSVPNMLQPGISNFDFIAGR-SKIYGVKNQEDFLEAXXXXXXXXXXXXXXXXXX 377 + V +S+P + + G + G+ + + G Q+ F Sbjct: 327 QWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQQPFFWTGEFSWGWLNNVSLYGGSV 386 Query: 378 SDN--YNAITLGNGWN-TPLGAISFDATRSSSKLNNDITHEGTSYQVAYNKYLVQTATRF 434 N Y ++ G G+N LG++SFD TRS ++L+N G SY+ Y+K T ++ Sbjct: 387 LTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRANYSKRFESTGSQL 446 Query: 435 SVAAWRYASQDYRTFSDHLYENDKINHQSDYDDFYDIGRKNSLSANIMQPLSNNLGNVSL 494 + A +R++ +++ T ++ Y ND NH ++Y + K S Q L + N + Sbjct: 447 TFAGYRFSDKNFVTMNE--YIND-TNHYTNYQN-----EKESYIVTFNQYLESLRLNTYV 498 Query: 495 SALWRNYWGRSGNAKDYQFSYSNSW-----QRISYTFSASQSYDENDKEEERFNLFISIP 549 S YW S N +Y S S + + +S + + S+ E D +++ L+++I Sbjct: 499 SLARNTYWDASSNV-NYSLSLSRDFDIGPLKNVSTSLTFSRINWEEDNQDQ---LYLNIS 554 Query: 550 FYWGD----DIAKTRHQINLSNSTSFSKDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQN 605 WG R+Q N + T+ D NN+ +G++D+ + Sbjct: 555 IPWGTSRTLSYGMQRNQDNEISHTASWYDSSDRNNSWSVSASGDNDEFKDMKASLRASYQ 614 Query: 606 NDTSLG----TNLSWRTPIATIDGSYSHSKNAWQSGGSISSGLVVWPGGINITNQLSDTF 661 ++T G + S R +++ S++ S A + G + + G +D+ Sbjct: 615 HNTENGRLYLSGTSQRDSYYSLNASWNGSFTATRHGAAFHD----YSGS-------ADSR 663 Query: 662 AILDAPGLEGAHINGQKYNRTNSKGQVVYDLMIPHRENHLVLDTANSESETELQGNRQII 721 ++DA G E +N K TN G V + + L +DT N +++ + Sbjct: 664 FMIDADGTEDIPLN-NKRAVTNRYGIGVIPSVSSYITTSLSVDTRNLPENVDIENSVITT 722 Query: 722 APYRGAVSYVQFTTDQRKPWYIQAL--RPDGSPLTFGYDVLD-LQENNIGVVGQGSRLFI 778 GA+ Y + D RK + I + DGS G V D +G+V G F+ Sbjct: 723 TLTEGAIGYAKL--DTRKGYQIIGVIRLADGSHPPLGISVKDETSHKELGLVADGG--FV 778 Query: 779 RVDEIPTGIKVAL 791 ++ I K+AL Sbjct: 779 YLNGIQDDNKLAL 791 >b0718 putative outer membrane protein (ybgQ) {Escherichia coli K12-MG1655} Length = 818 Score = 224 bits (570), Expect = 2e-059 Identities = 178/636 (27%), Positives = 294/636 (46%), Gaps = 73/636 (11%) Query: 51 PGNYELDFYVNNQ---------WRGKQDITIPESPVKPCLPKVLLTKLGVKTG---NLNT 98 PG Y + VNN W+ K D TIP C+ L+ K G+K +L Sbjct: 53 PGEYFVSVAVNNNKISNGQKINWQKKGDKTIP------CINDSLVDKFGLKPDIRQSLPQ 106 Query: 99 EDNCILLDKAVHGGQYQWDISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNL 158 D CI + +D + +LN+++PQA++ + PP +W G+ YNL Sbjct: 107 IDRCIDFSSRPEM-LFNFDQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDYNL 165 Query: 159 --SQYRSYDSNNNSNTASYGRFNSGLNLFSWQLHSDASYSKPDDMKGTWQSNTL---YLE 213 S YR D ++++N +YG +G+N +W+L SD +K D QS + YL Sbjct: 166 FASSYRPQDGSSSTNLNAYG--TAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTYLF 223 Query: 214 HGWSQILSTVQIGENYTSSLIFDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVAQSNALI 273 Q+ S + +GE SS IFD ++G L D +MLP ++ + P + G+AQ+NA + Sbjct: 224 RPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQTNATV 283 Query: 274 TVSQNGYIIYQKEVPPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQP 333 T+SQ+G +IYQK+VPPGPF I DL S G+ LDV + E DG V +F V +S P + + Sbjct: 284 TISQSGRVIYQKKVPPGPFIIDDLNQSVQGT-LDVKVTEEDGRVNNFQVSAASTPFLTRQ 342 Query: 334 GISNFDFIAGR---SKIYGVKNQEDFLEAXXXXXXXXXXXXXXXXXXSDNYNAITLGNGW 390 G + AG+ S + +N+ F D+Y++ +G G Sbjct: 343 GQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISDDDYHSAAMGIGQ 402 Query: 391 NTP-LGAISFDATRSSSKLNNDITHEGTSYQVAYNKYLVQTATRFSVAAWRYASQDYRTF 449 N LGA+SFD T +SS + G SY+ Y+K + T + S+AA+R++ + + ++ Sbjct: 403 NMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYRFSDRHFHSY 462 Query: 450 SDHLYENDKINHQSDYDDFYDIGRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAK 509 +++L D + SD D K ++S ++ QP++ N+ + L + +W + Sbjct: 463 ANYL---DHKYNDSDAQD-----EKQTISLSVGQPITPLNLNLYANLLHQTWWNADASTT 514 Query: 510 DYQFSYSN----SWQRISYTFSASQSYDENDKEEERFNLFISIPFYWGDDIAKTRHQINL 565 + N W+ IS + S + ++ E+ + + L IS+PF G + ++ Sbjct: 515 ANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVG-----YDM 569 Query: 566 SNSTSFSKDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLGTNLSWRTPIATIDG 625 NS+ + S N+T ++ ++G+ Q D A + G Sbjct: 570 QNSSHSTIHRMSWNDT-------LDERNSWGMSAGLQSDRPDNG-----------AQVSG 611 Query: 626 SYSHSKNA--WQSGGS-----ISSGLVVWPGGINIT 654 +Y H +A W G+ SS W G T Sbjct: 612 NYQHLSSAGEWDISGTYAASDYSSVSSSWSGSFTAT 647 >b2338 putative outer membrane protein (yfcU) {Escherichia coli K12-MG1655} Length = 578 Score = 183 bits (464), Expect = 4e-047 Identities = 148/544 (27%), Positives = 258/544 (47%), Gaps = 56/544 (10%) Query: 2 LRTTRWVAAIIFLYSFPG-YAEET--FDTHFMIGGMKGE-KVSEYHFDNKQPL-PGNYEL 56 LR W A+ S+ +AE+ FD+ F+ +KG+ K+ F ++ + PG Y L Sbjct: 9 LRILPWCIALAMSGSYSSVWAEDDIQFDSRFL--ELKGDTKIDLKRFSSQGYVEPGKYNL 66 Query: 57 DFYVNNQ----------WRGKQDITIPESPVKPCLPKVLLTKLGVKTG---NLN-TEDNC 102 +N Q + G+ D+ S CL L+ + G+K NL + D Sbjct: 67 QVQLNKQPLAEEYDIYWYAGEDDV----SKSYACLTPELVAQFGLKEDVAKNLQWSHDGK 122 Query: 103 ILLDKAVHGGQYQWDISEHRLNLTVPQAYINELERGYVPPESWDRGIDAFYTSYNLSQYR 162 L + G + + D+S+ L +++PQAY+ + PP WD GI Y+++ Sbjct: 123 CLKPGQLEGVEIKADLSQSALVISLPQAYLEYTWPDWDPPSRWDDGISGIIADYSITAQT 182 Query: 163 SYDSN--NNSNTASYGRFNSGLNLFSWQLHSD--ASYSKP-----------DDMKGTWQS 207 ++ N ++SN S G G+NL W++ +D +Y DD + W+ Sbjct: 183 RHEENGGDDSNEIS-GNGTVGVNLGPWRMRADWQTNYQHTRSNDDDDEFGGDDTQKKWEW 241 Query: 208 NTLYLEHGWSQILSTVQIGENYTSSLIFDSLRFSGIRLFRDMQMLPDSMQSFTPLVQGVA 267 + Y + + + +GE+Y +S IFD + G + D QMLP +++ + P + GVA Sbjct: 242 SRYYAWRALPSLKAKLALGEDYLNSDIFDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVA 301 Query: 268 QSNALITVSQNGYIIYQKEVPPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSV 327 + A +TVSQ G +IY+ +VP GPF I DL S SG+ L + I+E +G V+ + + +S+ Sbjct: 302 HTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSVSGT-LHIRIEEQNGQVQEYDISTASM 360 Query: 328 PNMLQPGISNFDFIAGRSKIYGVKNQEDFLE-AXXXXXXXXXXXXXXXXXXSDNYNAITL 386 P + +PG + + GR + +G + F A +NY + L Sbjct: 361 PYLTRPGQVRYKIMMGRPQEWGHHVEGGFFSGAEASWGIANGWSLYGGALGDENYQSAAL 420 Query: 387 GNGWN-TPLGAISFDATRSSSKLNNDITH-----EGTSYQVAYNKYLVQTATRFSVAAWR 440 G G + + GA++FD T S +KL+ D + +G S++V+Y+K Q +R + A +R Sbjct: 421 GVGRDLSTFGAVAFDVTHSHTKLDKDTAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYR 480 Query: 441 YASQDYRTFSDHLYENDKINHQSDYDDFYDIGRKNSLSANIMQPLSNNLGNVSLSALWRN 500 ++ +++ T S++L +D ++ D K +A Q + +V L+ Sbjct: 481 FSEENFMTMSEYLDASDSEMVRTGND-------KEMYTATYNQNFRDAGVSVYLNYTRHT 533 Query: 501 YWGR 504 YW R Sbjct: 534 YWDR 537 >b3216 putative outer membrane protein (yhcD) {Escherichia coli K12-MG1655} Length = 793 Score = 120 bits (300), Expect = 5e-028 Identities = 182/826 (22%), Positives = 345/826 (41%), Gaps = 91/826 (11%) Query: 1 MLRTTRWVAAIIFLYSFPGYAEET------FDTHFMIGGMKGEKVSEYHFDNKQPLPGNY 54 ML+ T I F +S P A+ FD + +S Y + + LPG Y Sbjct: 1 MLKKTLLAYTIGFAFSPPANADGIEIAAVDFDRETLKSLGVDPNISHYFSRSARFLPGEY 60 Query: 55 ELDFYVNNQWRGKQDITIPESPVKPCLPKVLLTKLGVKTGNLNTEDNCILLDKAVHGGQY 114 L VN + +G E+ CL + L + G+K + ++ C + G Sbjct: 61 SLIVSVNGEKKGNIATRFDENG-DICLDQAFLQQAGLKIPS-EEKNGCYDYILSYPGTTI 118 Query: 115 QWDISEHRLNLTV-PQAYINELERGYVPPESWD-----RGIDAFYTSYNLSQYRSYDSNN 168 ++ L++ V PQA I P D G A +Y+L R+ SN Sbjct: 119 TPLPNQEALDIIVSPQAII---------PIGLDLTNAATGGTAALLNYSLMSSRAEFSNG 169 Query: 169 NSNTASYGRFNSGLNLFSWQLHSDASYSKPDDMKGTW--QSNTLYLEHGWSQILSTVQIG 226 +S+ S G+N+ W L S ++ + GT+ Q+++ YL+ ++ + + ++ G Sbjct: 170 SSDY-SQAALEGGININDWMLRSHQFLTQTN---GTFSNQNSSTYLQRTFTDLKTLMRAG 225 Query: 227 ENYTSSLIFDSLRFSGIRLFRD--MQMLPDSMQSFTPLVQGVAQ-SNALITVSQNGYIIY 283 E ++ + + GI + D +Q +Q V G+A S A + + Q G +I+ Sbjct: 226 EVNLNNSVLEGASIYGIEIAPDNALQTSGSGVQ-----VTGIANTSQARVEIRQQGVLIH 280 Query: 284 QKEVPPGPFTIADLQLSGSGSDLDVSIKEADGSVRSFLVPYSSVPNMLQPGISNFDFIAG 343 VP G FTI D+ + SDL+V++ E DGS +++VP S++ N + F G Sbjct: 281 SILVPAGAFTIPDVPVRNGNSDLNVTVVETDGSSHNYIVP-STLFNQHVESFQGYRFAIG 339 Query: 344 RSKIYGVKNQED----FLEAXXXXXXXXXXXXXXXXXXSDNYNAITLGNGWNTPLGAISF 399 R V + D + A ++NY A ++ + PL ++ Sbjct: 340 R-----VDDDYDESPWVISASSGWNLTRWSAMNGGVIVAENYQAASIRSSL-VPLPDLTV 393 Query: 400 DATRSSSKLNNDITHEGTSYQVAYNKYLVQTATRFSVAAWRYASQDYRTFSDHLYENDKI 459 + S+S+ D + +G Y++ N Y + + + + R + + YR S+ + Sbjct: 394 SSQISTSQDTKD-SLQGQKYRLDAN-YNLPFSLGLTTSLTR-SDRHYRELSEAI------ 444 Query: 460 NHQSDYDDFYDIGRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAKDYQFSYSNSW 519 DD Y K++ + + ++ LG ++S + ++ + +++ ++ Sbjct: 445 ------DDDYTDPTKSTYALGLNWS-NSILGGFNISGYKTYSYDGDNDSSNLNINWNKAF 497 Query: 520 QR--ISYTFSASQSYDENDKEE-ERFNLFISIPFYWGDDIA-KTRHQINLSNSTSFSKDG 575 + +S + S EN++++ + F + ISIPF + TRH D Sbjct: 498 KHATVSVNWQHQLSASENNEDDGDLFYVNISIPFGRSNTATLYTRHD-----------DH 546 Query: 576 YSSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLGTNLSWR---TPIATIDGSYSHSKN 632 + TG+ G+ D+++Y + + +TSL ++S T ++ G+ Sbjct: 547 KTHYGTGVMGVVS--DEMSYYVNAERDHDERETSLNGSISSNLHYTQVSLAAGASGSDSR 604 Query: 633 AWQSGGSISSGLVVWPGGINITN-QLSDTFAILDAP-GLEGAHINGQKYN-RTNSKGQVV 689 + G++S G+ V G+ + ++DTFAI + G I Q T+ +G V Sbjct: 605 TY--NGTMSGGIAVHDQGVTFSPWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGNAV 662 Query: 690 YDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQALRPD 749 + P R + + +DTA+ ++ ++I RGAV V F+ ++ + D Sbjct: 663 IPSIQPWRTSGVEIDTASLPKNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITLSD 722 Query: 750 GSPLTFGYDVLDLQENNIGVVGQGSRLFIRVDEIPTGIKVALNDEQ 795 G L G + D + N + +F+ + I + + + DEQ Sbjct: 723 GKKLPRGVAIEDSEGNYLTTSVDDGVVFL--NNIKPDMVLDIKDEQ 766 >b1505 putative outer membrane protein {Escherichia coli K12-MG1655} Length = 382 Score = 94.0 bits (232), Expect = 4e-020 Identities = 84/356 (23%), Positives = 151/356 (42%), Gaps = 16/356 (4%) Query: 460 NHQSDYDDFYDI--GRKNSLSANIMQPLSNNLGNVSLSALWRNYWGRSGNAKDYQFSYSN 517 N Q+ + D++++ ++ +I Q L N G SA ++YW S + D Q S+ Sbjct: 14 NEQTQFIDYFNLFYSKRGQEQISISQQLGN-YGTTFFSASRQSYWNTSRS--DQQISFGL 70 Query: 518 SWQRISYTFSASQSYDENDKEEERFNLF---ISIPF-YW-GDDIAKTRHQINLSNSTSFS 572 + T S + SY N + +R +L +++PF +W D N S S S Sbjct: 71 NVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRNSNASYSMSND 130 Query: 573 KDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLGTN----LSWRTPIATIDGSYS 628 G +N +G+ G + LNY + V N TS GT+ L++R + YS Sbjct: 131 LKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGN-TSSGTSGYSSLNYRGAYGNTNVGYS 189 Query: 629 HSKNAWQSGGSISSGLVVWPGGINITNQLSDTFAILDAPGLEGAHINGQKYNRTNSKGQV 688 S ++ Q +S G++ GI L DT ++ APG + I Q T+ +G Sbjct: 190 RSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYA 249 Query: 689 VYDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGAVSYVQFTTDQRKPWYIQALRP 748 + +REN + L+ + EL + P GA++ F Q + L+ Sbjct: 250 ILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNA-QIGGKVLMTLKY 308 Query: 749 DGSPLTFGYDVLDLQENNIGVVGQGSRLFIRVDEIPTGIKVALNDEQNLFCTITFQ 804 + FG V + N +V + ++++ ++V+ ++N C + ++ Sbjct: 309 GNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCIVEYK 364 >b2337 putative outer membrane protein {Escherichia coli K12-MG1655} Length = 298 Score = 46.2 bits (108), Expect = 9e-006 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 16/231 (6%) Query: 552 WGDDIAKTRHQINLSNSTSFSKDGYSSNNTGITGIAGEHDQLNYGIYVNQQQQNNDTSLG 611 WGD+ + + N + T S+ GY S T H QLN G + TS+ Sbjct: 3 WGDN-STVSYNGNYGSGTDSSQVGYFSRVDDAT-----HYQLNIGT------SDKHTSVD 50 Query: 612 TNLSWRTPIATIDGSYSHSKNAWQSGG-SISSG--LVVWPGGINITNQLSDTFAILDAPG 668 S +A +D S ++ + + S G S+ G L G ++ T + T ++DA G Sbjct: 51 GYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTTHGGALHRTQNMGGTRLLIDADG 110 Query: 669 LEGAHINGQKYN-RTNSKGQVVYDLMIPHRENHLVLDTANSESETELQGNRQIIAPYRGA 727 + + G TN G+ V + + N +D E + GA Sbjct: 111 VADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNKLPENAEATQSVVQATLTEGA 170 Query: 728 VSYVQFTTDQRKPWYIQALRPDGSPLTFGYDVLDLQENNIGVVGQGSRLFI 778 + Y +F + DGS FG +V + E +G+V +++ Sbjct: 171 IGYRKFAVISGQKAMAVLRLQDGSHPPFGAEVKNDNEQTVGLVDDDGSVYL 221 Query= Z0023 putative chaperone protein {Escherichia coli O157:H7 EDL933} (227 letters) Score E Sequences producing significant alignments: (bits) Value b2110 putative chaperone (yehC) {Escherichia coli K12-MG1655} 268 3e-073 b0140 probable pilin chaperone similar to PapD (ecpD) {Escherich... 100 1e-022 b4316 periplasmic chaperone, required for type 1 fimbriae (fimC)... 93 2e-020 b3143 putative chaperone (yraI) {Escherichia coli K12-MG1655} 93 2e-020 b2336 putative chaperone (yfcS) {Escherichia coli K12-MG1655} 88 5e-019 b0717 putative chaperone (ybgP) {Escherichia coli K12-MG1655} 76 2e-015 b0939 putative chaperone (ycbR) {Escherichia coli K12-MG1655} 74 8e-015 b3047 putative membrane protein (yqiH) {Escherichia coli K12-MG1... 70 9e-014 b0531 putative chaperone (sfmC) {Escherichia coli K12-MG1655} 70 9e-014 b0944 putative chaperone (ycbF) {Escherichia coli K12-MG1655} 66 2e-012 >b2110 putative chaperone (yehC) {Escherichia coli K12-MG1655} Length = 239 Score = 268 bits (684), Expect = 3e-073 Identities = 122/224 (54%), Positives = 170/224 (75%) Query: 1 MRIITALLMSFFILPVHAGVVIYGTRIIYPEKNREVLVQLMNQSKNASLIQAWIDDGNTT 60 M+ + +LL+ +LP HAG+VIYGTRIIYP +N+EV+VQLMNQ +SL+QAWIDDG+T+ Sbjct: 16 MKGLLSLLIFSMVLPAHAGIVIYGTRIIYPAENKEVMVQLMNQGNRSSLLQAWIDDGDTS 75 Query: 61 IAPEKIQVTFILTPPVSRVAGGSGQQLKIRKMPNNLPHNKESLFYLNVLDIPPNNPQNAG 120 + PEKIQV F+LTPPV+++ SGQQ+KI+ MPN LP NKES+FYLNVLDIPPN+P+ G Sbjct: 76 LPPEKIQVPFMLTPPVAKIGANSGQQVKIKIMPNKLPTNKESIFYLNVLDIPPNSPEQEG 135 Query: 121 KNKIKLALQNRIKLLWRPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWITVTTIKAQN 180 KN +K A+QNRIKL +RP+GIAPV+K + +L ++ANW+T++ +KA N Sbjct: 136 KNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLVNRSGNGLVIKNDSANWVTISDVKANN 195 Query: 181 VKVNNESILLPPFSHNDITLKNNHASEYELTVVDDYGNNIHSKI 224 VKVN E+I++ P + +K+N+A+ + LT++DD+GN I KI Sbjct: 196 VKVNYETIMIAPLESQSVNVKSNNANNWHLTIIDDHGNYISDKI 239 >b0140 probable pilin chaperone similar to PapD (ecpD) {Escherichia coli K12-MG1655} Length = 246 Score = 99.8 bits (247), Expect = 1e-022 Identities = 51/127 (40%), Positives = 79/127 (62%), Gaps = 3/127 (2%) Query: 18 AGVVIYGTRIIYPEKNREVLVQLMNQSKNASLIQAWIDDGNTTIAPEKIQVTFILTPPVS 77 A +VI GTR+IY + V V+L N+ N L+Q+W+D G+ P I V F TPPVS Sbjct: 25 ADIVISGTRVIYKSDQKSVNVRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVS 84 Query: 78 RVAGGSGQQLKIR-KMPNNLPHNKESLFYLNVLDIP--PNNPQNAGKNKIKLALQNRIKL 134 R+ GQ +K+ +LP ++ES+F+ NVL++P P+ + A ++ ++LA + RIKL Sbjct: 85 RIDAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKL 144 Query: 135 LWRPSGI 141 +RP G+ Sbjct: 145 FYRPDGL 151 >b4316 periplasmic chaperone, required for type 1 fimbriae (fimC) {Escherichia coli K12-MG1655} Length = 241 Score = 92.8 bits (229), Expect = 2e-020 Identities = 59/202 (29%), Positives = 105/202 (51%), Gaps = 9/202 (4%) Query: 18 AGVVIYGTRIIYPEKNREVLVQLMNQSKNAS-LIQAWIDDGNTTIAPEKIQVTFILTPPV 76 AGV + TR+IYP ++ + + N +N++ LIQ+W+++ + FI+TPP+ Sbjct: 36 AGVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDGR-----FIVTPPL 90 Query: 77 SRVAGGSGQQLKIRKMPNN-LPHNKESLFYLNVLDIPPNNPQNAGKNKIKLALQNRIKLL 135 + G L+I NN LP ++ESLF++NV IP + +N ++LA+ +RIKL Sbjct: 91 FAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLY 150 Query: 136 WRPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWITVTTIKAQNVKVNNESILLPPFSH 195 +RP+ +A ++ +L T ++TVT + A + E+ L+PP Sbjct: 151 YRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVL--ENALVPPMGE 208 Query: 196 NDITLKNNHASEYELTVVDDYG 217 + + L ++ S ++DYG Sbjct: 209 STVKLPSDAGSNITYRTINDYG 230 >b3143 putative chaperone (yraI) {Escherichia coli K12-MG1655} Length = 231 Score = 92.8 bits (229), Expect = 2e-020 Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 8/220 (3%) Query: 3 IITALLMSFFILPVHAG-VVIYGTRIIYPEKNREVLVQLMNQ-SKNASLIQAWIDDGNTT 60 +I LL SF I AG +V+ TR+IY +E + + N+ ++ L+Q+W+D+ Sbjct: 8 VILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDN---- 63 Query: 61 IAPEKIQVTFILTPPVSRVAGGSGQQLKIRKMPNNLPHNKESLFYLNVLDIP-PNNPQNA 119 K + FI+TPP+ R+ G L+I K +NLP NKESLFY+NV IP + Sbjct: 64 -IDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDV 122 Query: 120 GKNKIKLALQNRIKLLWRPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWITVTTIKAQ 179 N++ L + RIK+ +RP+ + + L T ++ + Sbjct: 123 NANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVD 182 Query: 180 NVKVNNESILLPPFSHNDITLKNNHASEYELTVVDDYGNN 219 + ++ + P H + L + + ++DYG + Sbjct: 183 KTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGS 222 >b2336 putative chaperone (yfcS) {Escherichia coli K12-MG1655} Length = 250 Score = 87.8 bits (216), Expect = 5e-019 Identities = 57/148 (38%), Positives = 81/148 (54%), Gaps = 14/148 (9%) Query: 6 ALLMSFFILPVHAGVVIYGTRIIYPEKNREVLVQLMNQS-KNASLIQAWIDD--GNTTIA 62 ALL+S L A V TR+I+ E ++ + V L N K L Q+WI+D GN + Sbjct: 16 ALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSWIEDEKGNKITS 75 Query: 63 PEKIQVTFILTPPVSRVAGGSGQQLKIRKMP--NNLPHNKESLFYLNVLDIPPNNPQNAG 120 P + PPV R+ Q+K++ MP N LP ++ES+FY NV +IPP + + Sbjct: 76 P------LTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREIPPKSNK--- 126 Query: 121 KNKIKLALQNRIKLLWRPSGIAPVDKKS 148 N +++ALQ RIKL WRP + V KS Sbjct: 127 PNTLQIALQTRIKLFWRPKALEKVSMKS 154 >b0717 putative chaperone (ybgP) {Escherichia coli K12-MG1655} Length = 242 Score = 76.3 bits (186), Expect = 2e-015 Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 10/217 (4%) Query: 7 LLMSFFILPVHAGVVIYGTRIIYPEKNREVLVQLMNQS-KNASLIQAWIDDGNTTIAPEK 65 L++ L +A V TRI++ ++ +++ NQS K L +WI++ EK Sbjct: 9 LMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIENQSDKLPYLAYSWIENEKG----EK 64 Query: 66 IQVTFILTPPVSRVAGGSGQQLKIRKMPNN--LPHNKESLFYLNVLDIPPNNPQNAGKNK 123 + PP+ R+ + Q+++ K + LP ++E+LF+ N+ +IPP +++ Sbjct: 65 SDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRETLFFYNMREIPPAPDKSSDHAI 124 Query: 124 IKLALQNRIKLLWRPSGI-APVDKKSLSQLXXXXXXXXXXXXXETANWITVTTI--KAQN 180 +++A+Q+RIKL WRP+ + +K QL TA ++T+ + + Sbjct: 125 LQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQGNQLTLKNPTAYYLTIAYLGRNEKG 184 Query: 181 VKVNNESILLPPFSHNDITLKNNHASEYELTVVDDYG 217 V +++++ PFS + + S++ L +DDYG Sbjct: 185 VLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMDDYG 221 >b0939 putative chaperone (ycbR) {Escherichia coli K12-MG1655} Length = 233 Score = 73.9 bits (180), Expect = 8e-015 Identities = 55/202 (27%), Positives = 98/202 (48%), Gaps = 12/202 (5%) Query: 19 GVVIYGTRIIYPEKNREVLVQLMNQSKNAS-LIQAWIDDGNTTIAPE-KIQVTFILTPPV 76 G+ + TR++Y E ++ + + N S + LIQ+W+ + P+ K FI+TPP+ Sbjct: 31 GIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWV------MTPDNKKSADFIITPPL 84 Query: 77 SRVAGGSGQQLKIRKMPNNLPHNKESLFYLNVLDIPPNNPQNAGKNKIKLALQNRIKLLW 136 + + L+I + L ++E+LF+ +V +P + G N +K+A Q+ IKL W Sbjct: 85 FVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKRKEG-NTLKIATQSVIKLFW 143 Query: 137 RPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWITVTTIKAQNVKVNNESILLPPFSHN 196 RP G+A ++ ++L T +IT+T +K V N+ ++ PF Sbjct: 144 RPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQ--MISPFDKY 201 Query: 197 DITL-KNNHASEYELTVVDDYG 217 +L K S ++DYG Sbjct: 202 QFSLPKGAKNSSVTYRTINDYG 223 >b3047 putative membrane protein (yqiH) {Escherichia coli K12-MG1655} Length = 252 Score = 70.5 bits (171), Expect = 9e-014 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 24/227 (10%) Query: 3 IITALLMSFFILPVHAGVVIYGTRIIYPEKNREVLVQLMNQSKNAS-LIQAWIDD--GNT 59 I +L+S ++ TRII E ++ ++L NQSKN L Q WI+D GN Sbjct: 13 IAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEALKLTNQSKNLPYLAQTWIEDTKGN- 71 Query: 60 TIAPEKIQVTFILTPPVSRVAGGSGQQLKIRKMPNN----LPHNKESLFYLNVLDIPPNN 115 K + + PP+ R+ +Q++IR + LP ++E+LFY NV +IPP Sbjct: 72 -----KSRDFIVTVPPMVRL--NPSEQIQIRMITQEKIAQLPKDRETLFYFNVREIPPKT 124 Query: 116 PQNAGKNKIKLALQNRIKLLWRPSGIAPVDKKSLSQ---LXXXXXXXXXXXXXETANWIT 172 + KN +++ +Q+ +KL WRP I D ++ + +T Sbjct: 125 DK---KNVMQVTMQHALKLFWRPKAIELEDDGVMTYEKVEIIRRNDGSIRFNNKMPYHVT 181 Query: 173 VTTIKAQNVKV--NNESILLPPFSHNDITLKNNHASEYELTVVDDYG 217 + I V + +S+++ PFS+ + K N S +++ ++D+G Sbjct: 182 LGYIGTNGVTMLPQTQSLMVTPFSYANTQFK-NVPSTFQVGYINDFG 227 >b0531 putative chaperone (sfmC) {Escherichia coli K12-MG1655} Length = 230 Score = 70.5 bits (171), Expect = 9e-014 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 17/227 (7%) Query: 1 MRIITALLMSFFILPVHA------GVVIYGTRIIYPEKNREVLVQLMNQSKNAS-LIQAW 53 M I L++ F L + A G+ + TRIIYP ++ V + N N L+ +W Sbjct: 2 MTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSW 61 Query: 54 IDDGNTTIAPEKIQVTFILTPPVSRVAGGSGQQLKIRKMPNNLPHNKESLFYLNVLDIP- 112 I+ N++ EK +FI+TPP+ S L+I L ++ESLF++NV IP Sbjct: 62 IE--NSSGVKEK---SFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPS 116 Query: 113 -PNNPQNAGKNKIKLALQNRIKLLWRPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWI 171 N N G+N ++LA+ +R+KL RP + + ++ L + ++ Sbjct: 117 VDKNALN-GRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYV 175 Query: 172 TVTTIKAQNVKVNNESILLPPFSHNDITLKNNHASEYELTVVDDYGN 218 T+ ++ + K+ N + P ++ I L + + + V+DYG+ Sbjct: 176 TLVNLQVGSQKLGN--AMAAPRVNSQIPLPSGVQGKLKFQTVNDYGS 220 >b0944 putative chaperone (ycbF) {Escherichia coli K12-MG1655} Length = 245 Score = 66.2 bits (160), Expect = 2e-012 Identities = 48/218 (22%), Positives = 94/218 (43%), Gaps = 6/218 (2%) Query: 3 IITALLMSFFILPVHAGVVIYGTRIIYPEKNREVLVQLMNQSKNASLIQAWIDDGNTTIA 62 +I A+L + AGVV+ GTR I+P + + L N S+ + LI + I+ Sbjct: 20 LIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAG 79 Query: 63 PE--KIQVTFILTPPVSRVAGGSGQQLKIRKMPNN-LPHNKESLFYLNVLDIPPNNPQNA 119 E + + PP+ + G+ L++ + ++ LP ++E+LF L++ +P +N Sbjct: 80 GEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVEN- 138 Query: 120 GKNKIKLALQNRIKLLWRPSGIAPVDKKSLSQLXXXXXXXXXXXXXETANWITVTTIKAQ 179 +K+A+++ KL WRP G+ ++ QL T +I + + Sbjct: 139 --QSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVN 196 Query: 180 NVKVNNESILLPPFSHNDITLKNNHASEYELTVVDDYG 217 ++N ++ P + ++DYG Sbjct: 197 GKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYG 234 Query= Z0024 putative type-1 fimbrial protein {Escherichia coli O157:H7 EDL933} (177 letters) Score E Sequences producing significant alignments: (bits) Value b2111 putative fimbrial-like protein (yehD) {Escherichia coli K1... 70 1e-013 >b2111 putative fimbrial-like protein (yehD) {Escherichia coli K12-MG1655} Length = 180 Score = 69.7 bits (169), Expect = 1e-013 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 3/180 (1%) Query: 1 MKKYIIPF-VATTLMFSATTFAKDVDQGTLTIRGEVVDTTCYFVNGDSTTDIVVEDVVTS 59 MK+ II V ++ SA FA DVD GTLTI+G + ++ C F G + I + V TS Sbjct: 1 MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFEAGGDSVSINMPTVPTS 60 Query: 60 AMNQLINNEIYTLKTGSTSHDLEIQCDGNTA-PSIEVLASEFDANNFTLNKGTAENIGFA 118 Y G TS L+I C A + ++ ++ N + + +G+ Sbjct: 61 VFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDKITGNDKAIASSNDTVGYY 120 Query: 119 IFL-DDGTLTRMRPGLKTPLKDNGSGQYFLNLNAQYARTSGNPVTKGSVESTVTIKISAD 177 ++L D+ + + GQY + A+Y + + N V G V S++ ++++ D Sbjct: 121 LYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQSGDVLSSLVMRVAQD 180 Query= Z0025 orf Unknown function {Escherichia coli O157:H7 EDL933} (473 letters) ***** No hits found ****** Query= Z0027 30S ribosomal subunit protein S20 (rpsT) {Escherichia coli O157:H7 EDL933} (87 letters) Score E Sequences producing significant alignments: (bits) Value b0023 30S ribosomal subunit protein S20 (rpsT) {Escherichia coli... 168 7e-044 >b0023 30S ribosomal subunit protein S20 (rpsT) {Escherichia coli K12-MG1655} Length = 87 Score = 168 bits (425), Expect = 7e-044 Identities = 87/87 (100%), Positives = 87/87 (100%) Query: 1 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 60 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR Sbjct: 1 MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDR 60 Query: 61 QAAKGLIHKNKAARHKANLTAQINKLA 87 QAAKGLIHKNKAARHKANLTAQINKLA Sbjct: 61 QAAKGLIHKNKAARHKANLTAQINKLA 87 Query= Z0028 orf, hypothetical protein {Escherichia coli O157:H7 EDL933} (74 letters) Score E Sequences producing significant alignments: (bits) Value b0024 orf, hypothetical protein {Escherichia coli K12-MG1655} 137 1e-034 >b0024 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 72 Score = 137 bits (345), Expect = 1e-034 Identities = 70/74 (94%), Positives = 70/74 (94%), Gaps = 2/74 (2%) Query: 1 MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGSQFLPVICAMTMTMKSHFFLISVLNRRLT 60 MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAG QFLPVICA M MKSHFFLISVLNRRLT Sbjct: 1 MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICA--MAMKSHFFLISVLNRRLT 58 Query: 61 LTAVQGILGRFSLF 74 LTAVQGILGRFSLF Sbjct: 59 LTAVQGILGRFSLF 72 Query= Z0029 putative regulator (ribF) {Escherichia coli O157:H7 EDL933} (313 letters) Score E Sequences producing significant alignments: (bits) Value b0025 putative regulator (ribF) {Escherichia coli K12-MG1655} 618 e-178 >b0025 putative regulator (ribF) {Escherichia coli K12-MG1655} Length = 313 Score = 618 bits (1593), Expect = e-178 Identities = 313/313 (100%), Positives = 313/313 (100%) Query: 1 MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPL 60 MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPL Sbjct: 1 MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPL 60 Query: 61 ELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKF 120 ELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKF Sbjct: 61 ELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKF 120 Query: 121 LAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLAL 180 LAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLAL Sbjct: 121 LAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLAL 180 Query: 181 AESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGV 240 AESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGV Sbjct: 181 AESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGV 240 Query: 241 ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDE 300 ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDE Sbjct: 241 ANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDE 300 Query: 301 LTAREFFGLTKPA 313 LTAREFFGLTKPA Sbjct: 301 LTAREFFGLTKPA 313 Query= Z0030 isoleucine tRNA synthetase (ileS) {Escherichia coli O157:H7 EDL933} (938 letters) Score E Sequences producing significant alignments: (bits) Value b0026 isoleucine tRNA synthetase (ileS) [6.1.1.5] {Escherichia c... 1910 0.0 b4258 valine tRNA synthetase (valS) [6.1.1.9] {Escherichia coli ... 149 6e-037 b2114 methionine tRNA synthetase (metG) [6.1.1.10] {Escherichia ... 51 3e-007 >b0026 isoleucine tRNA synthetase (ileS) [6.1.1.5] {Escherichia coli K12-MG1655} Length = 938 Score = 1910 bits (4948), Expect = 0.0 Identities = 933/938 (99%), Positives = 934/938 (99%) Query: 1 MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA 60 MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA Sbjct: 1 MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYA 60 Query: 61 NGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPDEKFTAA 120 NGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKP EKFTAA Sbjct: 61 NGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAA 120 Query: 121 EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK 180 EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK Sbjct: 121 EFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHK 180 Query: 181 GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFGVSNVNGPISLVIW 240 GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKF VSNVNGPISLVIW Sbjct: 181 GAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIW 240 Query: 241 TTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAE 300 TTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAE Sbjct: 241 TTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAE 300 Query: 301 LELLRFAHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPD 360 LELLRF HPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPD Sbjct: 301 LELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPD 360 Query: 361 GTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ 420 GTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ Sbjct: 361 GTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQ 420 Query: 421 WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK 480 WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK Sbjct: 421 WFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHK 480 Query: 481 DTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGST 540 DTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGST Sbjct: 481 DTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGST 540 Query: 541 HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG 600 HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG Sbjct: 541 HSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQG 600 Query: 601 RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR 660 RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR Sbjct: 601 RKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTAR 660 Query: 661 FLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCS 720 FLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCS Sbjct: 661 FLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCS 720 Query: 721 VEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPG 780 VEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPG Sbjct: 721 VEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPG 780 Query: 781 EREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV 840 EREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV Sbjct: 781 EREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAV 840 Query: 841 TLYTEPELAAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEK 900 TLY EPEL+AKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEK Sbjct: 841 TLYAEPELSAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEK 900 Query: 901 CPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA 938 CPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA Sbjct: 901 CPRCWHYTQDVGKVAEHAEICGRCVSNVAGDGEKRKFA 938 >b4258 valine tRNA synthetase (valS) [6.1.1.9] {Escherichia coli K12-MG1655} Length = 951 Score = 149 bits (377), Expect = 6e-037 Identities = 177/819 (21%), Positives = 301/819 (36%), Gaps = 175/819 (21%) Query: 46 KGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLP---- 101 + +++F + PP GS+H+GH+ + + D +++ + + G ++ + G D G+ Sbjct: 30 ESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMV 89 Query: 102 IELKVEQEYGKPDEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKT 161 +E K+ E GK + F K E+ A + RLG DW TMD Sbjct: 90 VERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGL 149 Query: 162 EANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDA 221 + ++ +++G + V+W R+A+++ EVE + + + D Sbjct: 150 SNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLAD--- 206 Query: 222 LKAKFGVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESV 281 G +G LV+ TT P TL + +++ P+ D + G+ VIL Sbjct: 207 -----GAKTADGKDYLVVATTRPETLLGDTGVAVNPE-DPRYKDLIGKYVIL-------- 252 Query: 282 MQRIGVTDYTILGTVKGAELELLRFAHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341 P + +P + +H ++ GTG V P H + Sbjct: 253 ---------------------------PLVNRRIPIVGDEHADMEKGTGCVKITPAHDFN 285 Query: 342 DYVIGQKYGLETANPVGPDG--------------------TYLPGTYPTLDGVNVFKAND 381 DY +G+++ L N + DG + +P + L+ F A Sbjct: 286 DYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLER---FAARK 342 Query: 382 IVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGV 441 VVA + G L ++ + P R I T QW+V D A E + Sbjct: 343 AVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDI 402 Query: 442 QWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVE 501 Q++P + S + + DWCISRQ WG H+ Sbjct: 403 QFVPKQYENMYFSWMRDIQDWCISRQLWWG-------HR--------------------- 434 Query: 502 VDGIQAWWDLDAKEILGDEADQYVKV------------PDTLDVWFDSGS-THSSV---- 544 I AW+D +G D+ K D LD WF S T S++ Sbjct: 435 ---IPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPE 491 Query: 545 -VDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAM------KGKAPYRQVLTHGFTVD 597 D +F H + + G D W +M++ K + P+ V G D Sbjct: 492 NTDALRQF--HPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRD 549 Query: 598 GQGRKMSKSIGNTVSPQDVMNKL------------------------------------- 620 +G+KMSKS GN + P D+++ + Sbjct: 550 DEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPH 609 Query: 621 GADILRLWVASTDYTGEMAVSDEILKRAADSYR----RIRNTARFLLANLNGFDPAKDMV 676 G D LR +A+ TG D +KR + YR ++ N +RF+L N G D + Sbjct: 610 GTDALRFTLAALASTGRDINWD--MKR-LEGYRNFCNKLWNASRFVLMNTEGQDCGFNGG 666 Query: 677 KPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQY 736 + + + DRW + + +A +++ F L F + +YL++ K Sbjct: 667 E-MTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTK--PV 723 Query: 737 TAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVW 775 R + L + E L+R PI+ F + +W Sbjct: 724 MNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIW 762 >b2114 methionine tRNA synthetase (metG) [6.1.1.10] {Escherichia coli K12-MG1655} Length = 677 Score = 51.2 bits (121), Expect = 3e-007 Identities = 22/51 (43%), Positives = 33/51 (64%) Query: 58 PYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQ 108 PYANGSIH+GH + I D+ V+ + + G++ ++ D HG PI LK +Q Sbjct: 15 PYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ 65 Query= Z0031 prolipoprotein signal peptidase (SPase II) (lspA) {Escherichia coli O157:H7 EDL933} (164 letters) Score E Sequences producing significant alignments: (bits) Value b0027 prolipoprotein signal peptidase (SPase II) (lspA) [3.4.23.... 303 5e-084 >b0027 prolipoprotein signal peptidase (SPase II) (lspA) [3.4.23.36] {Escherichia coli K12-MG1655} Length = 164 Score = 303 bits (775), Expect = 5e-084 Identities = 150/164 (91%), Positives = 151/164 (92%) Query: 1 MSQSICSTGXXXXXXXXXXXIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSF 60 MSQSICSTG IIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSF Sbjct: 1 MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSF 60 Query: 61 LADSGGWQRWFFAGIAIGISVTLVVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF 120 LADSGGWQRWFFAGIAIGISV L VMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF Sbjct: 61 LADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGF 120 Query: 121 VVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ 164 VVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPS+AKKQ Sbjct: 121 VVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSRAKKQ 164 Query= Z0033 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a (slpA) {Escherichia coli O157:H7 EDL933} (149 letters) Score E Sequences producing significant alignments: (bits) Value b0028 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomeras... 296 5e-082 b3349 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (... 65 3e-012 >b0028 probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) (slpA) {Escherichia coli K12-MG1655} Length = 149 Score = 296 bits (757), Expect = 5e-082 Identities = 149/149 (100%), Positives = 149/149 (100%) Query: 1 MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK 60 MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK Sbjct: 1 MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDK 60 Query: 61 TTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS 120 TTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS Sbjct: 61 TTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDS 120 Query: 121 ITVDFNHPLAGQTVHFDIEVLEIDPALEA 149 ITVDFNHPLAGQTVHFDIEVLEIDPALEA Sbjct: 121 ITVDFNHPLAGQTVHFDIEVLEIDPALEA 149 >b3349 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (slyD) {Escherichia coli K12-MG1655} Length = 196 Score = 64.7 bits (156), Expect = 3e-012 Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 2/144 (1%) Query: 5 VQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 64 V + V + + ++ +DG + + + P + G SL GLE L G +VGDK + Sbjct: 3 VAKDLVVSLAYQVRTEDGVLVDESPVSA-PLDYLHGHGSLISGLETALEGHEVGDKFDVA 61 Query: 65 LEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVD 124 + + A+G +L+Q + FM E ++G L D +P I + D + VD Sbjct: 62 VGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFL-AETDQGPVPVEITAVEDDHVVVD 120 Query: 125 FNHPLAGQTVHFDIEVLEIDPALE 148 NH LAGQ + F++EV+ I A E Sbjct: 121 GNHMLAGQNLKFNVEVVAIREATE 144 Query= Z0034 control of stringent response involved in penicillin (lytB) {Escherichia coli O157:H7 EDL933} (316 letters) Score E Sequences producing significant alignments: (bits) Value b0029 control of stringent response; involved in penicillin tole... 581 e-167 >b0029 control of stringent response; involved in penicillin tolerance (lytB) {Escherichia coli K12-MG1655} Length = 316 Score = 581 bits (1497), Expect = e-167 Identities = 298/316 (94%), Positives = 298/316 (94%) Query: 1 MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI 60 MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI Sbjct: 1 MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQI 60 Query: 61 SEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG 120 SEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG Sbjct: 61 SEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIG 120 Query: 121 HAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDA 180 HAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDA Sbjct: 121 HAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDA 180 Query: 181 LRKRFPKIVGPRKDDICYATTNXXXXXXXXXXXXXXXXXXGSKNSSNSNRLAELAQRMGK 240 LRKRFPKIVGPRKDDICYATTN GSKNSSNSNRLAELAQRMGK Sbjct: 181 LRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGK 240 Query: 241 RAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENI 300 RAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENI Sbjct: 241 RAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENI 300 Query: 301 VFEVPKELRVDIREVD 316 VFEVPKELRVDIREVD Sbjct: 301 VFEVPKELRVDIREVD 316 Query= Z0035 orf, hypothetical protein (yaaF) {Escherichia coli O157:H7 EDL933} (304 letters) Score E Sequences producing significant alignments: (bits) Value b0030 orf, hypothetical protein (yaaF) {Escherichia coli K12-MG1... 576 e-166 b0651 putative tRNA synthetase (ybeK) {Escherichia coli K12-MG1655} 212 2e-056 b2162 orf, hypothetical protein (yeiK) {Escherichia coli K12-MG1... 184 8e-048 >b0030 orf, hypothetical protein (yaaF) {Escherichia coli K12-MG1655} Length = 304 Score = 576 bits (1485), Expect = e-166 Identities = 288/302 (95%), Positives = 289/302 (95%) Query: 1 MRLPIFLDTDPGXXXXXXXXXXXXXPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEI 60 MRLPIFLDTDPG PELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEI Sbjct: 1 MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEI 60 Query: 61 PLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTL 120 PLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTL Sbjct: 61 PLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTL 120 Query: 121 VAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSG 180 VAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSG Sbjct: 121 VAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSG 180 Query: 181 IEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAW 240 IEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAW Sbjct: 181 IEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAW 240 Query: 241 LVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQQWVAEVL 300 LVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDL+VKGFQQWVAEVL Sbjct: 241 LVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLDVKGFQQWVAEVL 300 Query: 301 AL 302 AL Sbjct: 301 AL 302 >b0651 putative tRNA synthetase (ybeK) {Escherichia coli K12-MG1655} Length = 311 Score = 212 bits (540), Expect = 2e-056 Identities = 130/307 (42%), Positives = 171/307 (55%), Gaps = 7/307 (2%) Query: 1 MRLPIFLDTDPGXXXXXXXXXXXXXPELDLQLMTTVAGNVSVEKTTRNALQLLHFWN-AE 59 M LPI LD DPG PELD++ +T+ AGN + EKT RN L++L N + Sbjct: 1 MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEKTLRNVLRMLTLLNRTD 60 Query: 60 IPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVT 119 IP+A GA PL+R A +VHGESG+ G E P A + L + EPVT Sbjct: 61 IPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNCTAVELMAKTLRESAEPVT 120 Query: 120 LVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRS 179 +V+ GP TN+ALLL+ PE I R+VIMGG+ G GN TP AEFNI DPEAA VF+S Sbjct: 121 IVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWTPAAEFNIYVDPEAAEIVFQS 180 Query: 180 GIEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHA----LFSHYRSGSMQS--GLRMH 233 GI +VM GLDVT++A + + + + A F Y G +H Sbjct: 181 GIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAELLDFFLEYHKDEKWGFVGAPLH 240 Query: 234 DLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQ 293 D C IAWL++P+LFT +V VETQG++T G TVVD G N V +D++ +GF Sbjct: 241 DPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVVDYYYLTGNKPNATVMVDVDRQGFV 300 Query: 294 QWVAEVL 300 +A+ L Sbjct: 301 DLLADRL 307 >b2162 orf, hypothetical protein (yeiK) {Escherichia coli K12-MG1655} Length = 313 Score = 184 bits (466), Expect = 8e-048 Identities = 112/302 (37%), Positives = 160/302 (52%), Gaps = 11/302 (3%) Query: 5 IFLDTDPGXXXXXXXXXXXXXPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEIPLAQ 64 I LD DPG P +DL +T VAGN +++KT N L + +P+ Sbjct: 6 IILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEINVPVYA 65 Query: 65 GAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLVAIG 124 G P++R A ++HGE+G+ G F R+ A I D LM + +TLV +G Sbjct: 66 GMPQPIMRQQIVADNIHGETGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVG 125 Query: 125 PLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIV 184 PL+NIA+ + P P IR +V+MGG+ G GN TP+AEFNI ADPEAA VF SG+ +V Sbjct: 126 PLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEAARVVFTSGVPLV 185 Query: 185 MCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALFSHYRSGSMQ--------SGLRMHDLC 236 M GLD+TNQ + TPD ++ ++ R G LFS + +++ +G +HD Sbjct: 186 MMGLDLTNQTVCTPDVIA---RMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDAT 242 Query: 237 AIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQQWV 296 I +L+ PD + +V V+ G TV D G LGKPAN +V + ++ F V Sbjct: 243 CIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLV 302 Query: 297 AE 298 E Sbjct: 303 EE 304 Query= Z0036 dihydrodipicolinate reductase (dapB) {Escherichia coli O157:H7 EDL933} (273 letters) Score E Sequences producing significant alignments: (bits) Value b0031 dihydrodipicolinate reductase (dapB) [1.3.1.26] {Escherich... 502 e-143 >b0031 dihydrodipicolinate reductase (dapB) [1.3.1.26] {Escherichia coli K12-MG1655} Length = 273 Score = 502 bits (1292), Expect = e-143 Identities = 256/273 (93%), Positives = 258/273 (94%) Query: 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV 60 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV Sbjct: 1 MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGV 60 Query: 61 TVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQXXXXXXXX 120 TVQSSLDA+KDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQ Sbjct: 61 TVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAAD 120 Query: 121 XXXXXXXNFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAH 180 NFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAH Sbjct: 121 IAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAH 180 Query: 181 ALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR 240 ALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR Sbjct: 181 ALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSR 240 Query: 241 MTFANGAVRSALWLSGKENGLFDMRDVLDLNNL 273 MTFANGAVRSALWLSGKE+GLFDMRDVLDLNNL Sbjct: 241 MTFANGAVRSALWLSGKESGLFDMRDVLDLNNL 273 Query= Z0037 carbamoyl-phosphate synthetase, glutamine (small) subunit (carA) {Escherichia coli O157:H7 EDL933} (382 letters) Score E Sequences producing significant alignments: (bits) Value b0032 carbamoyl-phosphate synthetase, glutamine (small) subunit ... 771 0.0 b3360 p-aminobenzoate synthetase, component II (pabA) {Escherich... 53 3e-008 b1263 anthranilate synthase component II, glutamine amidotransfe... 46 5e-006 >b0032 carbamoyl-phosphate synthetase, glutamine (small) subunit (carA) [6.3.5.5] {Escherichia coli K12-MG1655} Length = 382 Score = 771 bits (1990), Expect = 0.0 Identities = 382/382 (100%), Positives = 382/382 (100%) Query: 1 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI Sbjct: 1 MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60 Query: 61 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR Sbjct: 61 GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120 Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG Sbjct: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180 Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN Sbjct: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240 Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV Sbjct: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300 Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP Sbjct: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360 Query: 361 HDAAPLFDHFIELIEQYRKTAK 382 HDAAPLFDHFIELIEQYRKTAK Sbjct: 361 HDAAPLFDHFIELIEQYRKTAK 382 >b3360 p-aminobenzoate synthetase, component II (pabA) {Escherichia coli K12-MG1655} Length = 187 Score = 53.1 bits (126), Expect = 3e-008 Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 15/155 (9%) Query: 208 MLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFG 267 +LV R LT+ D+ + P I +S GP P ++ I+ + +P+ G Sbjct: 26 VLVKRNDALTLA-------DIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGR-LPILG 77 Query: 268 ICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVV------MITAQNHGFAVDEATL 321 +CLGHQ +A A G K V+ HG P+ + V + + H V+ +L Sbjct: 78 VCLGHQAMAQAFGGKVVRAAKVMHGKTSPITHNGEGVFRGLANPLTVTRYHSLVVEPDSL 137 Query: 322 PANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEA 356 PA VT S + GI Q HPE+ Sbjct: 138 PACFDVTAWS-ETREIMGIRHRQWDLEGVQFHPES 171 >b1263 anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase (trpD) [2.4.2.18] {Escherichia coli K12-MG1655} Length = 531 Score = 45.8 bits (107), Expect = 5e-006 Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%) Query: 219 VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALA 278 +PAQT E + M+ + LS GPG P+ + + L +P+ GICLGHQ + A Sbjct: 35 IPAQTLIERLATMSNPVLMLSPGPGVPSEAGCMPELLTR-LRGKLPIIGICLGHQAIVEA 93 Query: 279 SGAKTVKMKFGHHGGNHPVK-DVEKNVVMIT-----AQNHGFAVDEATLPANLRVTHKSL 332 G + HG ++ D + +T A+ H + +PA L T + Sbjct: 94 YGGYVGQAGEILHGKASSIEHDGQAMFAGLTNPLPVARYHSLV--GSNIPAGL--TINAH 149 Query: 333 FDGTLQGIHRTDKPAFSFQGHPEA 356 F+G + + FQ HPE+ Sbjct: 150 FNGMVMAVRHDADRVCGFQFHPES 173 Query= Z0038 carbamoyl-phosphate synthase large subunit (carB) {Escherichia coli O157:H7 EDL933} (1073 letters) Score E Sequences producing significant alignments: (bits) Value b0033 carbamoyl-phosphate synthase large subunit (carB) [6.3.5.5... 2100 0.0 b3256 acetyl CoA carboxylase, biotin carboxylase subunit (accC) ... 69 2e-012 >b0033 carbamoyl-phosphate synthase large subunit (carB) [6.3.5.5] {Escherichia coli K12-MG1655} Length = 1073 Score = 2100 bits (5440), Expect = 0.0 Identities = 1070/1073 (99%), Positives = 1073/1073 (100%) Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM Sbjct: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60 Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA Sbjct: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120 Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG Sbjct: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180 Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM Sbjct: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240 Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM Sbjct: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300 Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP Sbjct: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360 Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA Sbjct: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEA 420 Query: 421 LTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480 LTKIRRELKDAGA+RIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG Sbjct: 421 LTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVG 480 Query: 481 ITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540 ITGLNA+FLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT Sbjct: 481 ITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDT 540 Query: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN Sbjct: 541 AYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVN 600 Query: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP Sbjct: 601 CNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVP 660 Query: 661 VIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720 VIGTSPDAIDRAEDRERFQHAV+RLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL Sbjct: 661 VIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVL 720 Query: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME Sbjct: 721 GGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIME 780 Query: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI Sbjct: 781 HIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLI 840 Query: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF Sbjct: 841 EVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKF 900 Query: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL Sbjct: 901 PGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDL 960 Query: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR Sbjct: 961 AAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGR 1020 Query: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK Sbjct: 1021 RAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK 1073 >b3256 acetyl CoA carboxylase, biotin carboxylase subunit (accC) [6.3.4.14] {Escherichia coli K12-MG1655} Length = 449 Score = 68.6 bits (166), Expect = 2e-012 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 29/187 (15%) Query: 705 AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYF-----QTAVSVSNDAPVLLDHFLDDA 759 AK IGYP++++ S GGR M +V +A+L + + + SND V ++ +L++ Sbjct: 149 AKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDM-VYMEKYLENP 207 Query: 760 VEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSL-----------PAYTLSQEIQDV 808 V++ + DG+ ++ + CS+ PA ++ E++ Sbjct: 208 RHVEIQVLADGQ------------GNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRY 255 Query: 809 MRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARV 868 + ++ K ++ RG +F +N E Y IE+N R P TGV L K R+ Sbjct: 256 IGERCAKACVDIGYRGAGTFEFLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRI 315 Query: 869 MAGKSLA 875 AG+ L+ Sbjct: 316 AAGQPLS 322 Score = 52.4 bits (124), Expect = 2e-007 Identities = 79/333 (23%), Positives = 132/333 (39%), Gaps = 34/333 (10%) Query: 18 IVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATY-IEP-------I 69 IVI E +ACK L G + + V+S+ + +AD T I P + Sbjct: 5 IVIANRGEIALRILRACKEL---GIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYL 61 Query: 70 HWEVVRKIIEKERPDAVLPTMGGQTA-LNCALELERQGVLEEFGVTMIGATADAIDKAED 128 + + E A+ P G + N A ++ER G + IG A+ I D Sbjct: 62 NIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFI------FIGPKAETIRLMGD 115 Query: 129 RRRFDVAMKKIGLETARSG---IAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNR 185 + AMKK G+ + M++ A+A +G+P II+ S GG G G+ R Sbjct: 116 KVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKASG--GGGGRGMRVVR 173 Query: 186 EEFEEICARGLDLSPTKE------LLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDA 239 + E + + + K + +++ L + E++V+ D N I + E + Sbjct: 174 GDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADGQGNAIYLA--ERDCS 231 Query: 240 MGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIE 299 M + APA +T + + + +IG G+ F +NG IE Sbjct: 232 MQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGT---FEFLFENGEFYFIE 288 Query: 300 MNPRVSRSSALASKATGFPIAKVAAKLAVGYTL 332 MN R+ + TG + K ++A G L Sbjct: 289 MNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPL 321 Query= Z0039 orf Unknown function {Escherichia coli O157:H7 EDL933} (72 letters) ***** No hits found ****** Query= Z0040 transcriptional regulator of cai operon {Escherichia coli O157:H7 EDL933} (166 letters) Score E Sequences producing significant alignments: (bits) Value b0034 transcriptional regulator of cai operon (caiF) {Escherichi... 335 1e-093 >b0034 transcriptional regulator of cai operon (caiF) {Escherichia coli K12-MG1655} Length = 166 Score = 335 bits (858), Expect = 1e-093 Identities = 166/166 (100%), Positives = 166/166 (100%) Query: 1 MKLHTIDISTILIWPCLIASKRVIARLLICETGVRMCEGYVEKPLYLLIAEWMMAENRWV 60 MKLHTIDISTILIWPCLIASKRVIARLLICETGVRMCEGYVEKPLYLLIAEWMMAENRWV Sbjct: 1 MKLHTIDISTILIWPCLIASKRVIARLLICETGVRMCEGYVEKPLYLLIAEWMMAENRWV 60 Query: 61 IAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQ 120 IAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQ Sbjct: 61 IAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQ 120 Query: 121 IYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR 166 IYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR Sbjct: 121 IYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR 166 Query= Z0041 possible synthesis of cofactor for carnitine racemase (caiE) {Escherichia coli O157:H7 EDL933} (203 letters) Score E Sequences producing significant alignments: (bits) Value b0035 possible synthesis of cofactor for carnitine racemase and ... 403 e-114 b1400 putative transferase {Escherichia coli K12-MG1655} 242 1e-065 b3279 putative transferase (yrdA) {Escherichia coli K12-MG1655} 98 3e-022 >b0035 possible synthesis of cofactor for carnitine racemase and dehydratase (caiE) {Escherichia coli K12-MG1655} Length = 203 Score = 403 bits (1036), Expect = e-114 Identities = 198/203 (97%), Positives = 200/203 (98%) Query: 1 MERTLTTVSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQ 60 MERTLTTVSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQ Sbjct: 1 MERTLTTVSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQ 60 Query: 61 AGANIQDGCIMHGYTDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEES 120 AGANIQDGCIMHGY DTDTIVGENGHIGHGAILHGC+IGRDALVGMNSVIMDGAVIGEES Sbjct: 61 AGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCLIGRDALVGMNSVIMDGAVIGEES 120 Query: 121 IVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHET 180 IVAAMSFVKAGF GEKRQLLMGTPARAVR+VSDDELHWKRLNTKEYQDLVGRCH SLHET Sbjct: 121 IVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQDLVGRCHVSLHET 180 Query: 181 QPLRQMEENRPRLQGTTDVTPKR 203 QPLRQMEENRPRLQGTTDVTPKR Sbjct: 181 QPLRQMEENRPRLQGTTDVTPKR 203 >b1400 putative transferase {Escherichia coli K12-MG1655} Length = 196 Score = 242 bits (618), Expect = 1e-065 Identities = 114/193 (59%), Positives = 149/193 (77%) Query: 11 YAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCI 70 Y +GL PVV +FVHP+AVLIGDVI+G GVY+GP ASLRGD+GR++V+ GANIQD C+ Sbjct: 4 YQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLRGDFGRIVVKDGANIQDNCV 63 Query: 71 MHGYTDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKA 130 MHG+ + DT+VGE+GHIGH AILHGC+I R+ALVGMN+V+MDGAVIGE SIV A +FVKA Sbjct: 64 MHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAVVMDGAVIGENSIVGASAFVKA 123 Query: 131 GFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENR 190 L++G+PA+A+R +S+ EL WK+ T EYQ LV RC +LH+ +PLR++E R Sbjct: 124 KAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQVLVTRCKQTLHQVEPLREIEPGR 183 Query: 191 PRLQGTTDVTPKR 203 RL ++ PK+ Sbjct: 184 KRLVFDENLRPKQ 196 >b3279 putative transferase (yrdA) {Escherichia coli K12-MG1655} Length = 256 Score = 98.2 bits (243), Expect = 3e-022 Identities = 56/177 (31%), Positives = 89/177 (50%), Gaps = 7/177 (3%) Query: 13 FEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMH 72 + L P + + S+V+IGDV + V I PL +RGD + + A NIQDG ++H Sbjct: 80 YRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLH 139 Query: 73 -------GYTDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAM 125 +GE+ +GH +LHGC IG LVGM S+++DGA++ ++ ++ A Sbjct: 140 VTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAG 199 Query: 126 SFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQP 182 S V E L +G+P + +R +SD+E R + Y ++TQP Sbjct: 200 SLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP 256 Query= Z0042 carnitine racemase (caiD) {Escherichia coli O157:H7 EDL933} (297 letters) Score E Sequences producing significant alignments: (bits) Value b0036 carnitine racemase (caiD) [5.-.-.-] {Escherichia coli K12-... 550 e-158 b1393 putative enzyme (ydbS) {Escherichia coli K12-MG1655} 114 8e-027 b1394 putative enzyme {Escherichia coli K12-MG1655} 102 4e-023 b2919 putative enzyme (ygfG) {Escherichia coli K12-MG1655} 85 7e-018 b2341 putative enzyme {Escherichia coli K12-MG1655} 83 2e-017 b2262 dihydroxynaphtoic acid synthetase (menB) [4.1.3.36] {Esche... 76 3e-015 b3846 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydro... 72 3e-014 >b0036 carnitine racemase (caiD) [5.-.-.-] {Escherichia coli K12-MG1655} Length = 297 Score = 550 bits (1416), Expect = e-158 Identities = 279/297 (93%), Positives = 281/297 (94%) Query: 1 MKRQGTTLPANNHALKQYAFFAGMLSSLKKQKWRKGMSESLHLTRNGSILEITLDRPKAN 60 MK+QGTTLPANNH LKQYAFFAGMLSSLKKQKWRKGMSESLHLTRNGSILEITLDRPKAN Sbjct: 1 MKQQGTTLPANNHTLKQYAFFAGMLSSLKKQKWRKGMSESLHLTRNGSILEITLDRPKAN 60 Query: 61 AIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF 120 AIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF Sbjct: 61 AIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGF 120 Query: 121 AGLTEIFNLDKPVIAAVNXXXXXXXXXXXXXXDFIVCADNASFALPEAKLGIVPDSGGVL 180 AGLTEIFNLDKPVIAAVN DFIVCADNASFALPEAKLGIVPDSGGVL Sbjct: 121 AGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVL 180 Query: 181 RLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAI 240 RLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAI Sbjct: 181 RLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAI 240 Query: 241 AALKEIYRTTSEMPVEESYSYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR 297 AALKEIYRTTSEMPVEE+Y YIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR Sbjct: 241 AALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR 297 >b1393 putative enzyme (ydbS) {Escherichia coli K12-MG1655} Length = 255 Score = 114 bits (285), Expect = 8e-027 Identities = 87/264 (32%), Positives = 141/264 (53%), Gaps = 12/264 (4%) Query: 37 MSESLHLTRNGSILEITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKF 95 MSE L ++R +L +TL+RP A NA++ ++ D + V +ITG +F Sbjct: 1 MSE-LIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITG-NARF 58 Query: 96 FSAGWDLKAAAEGE--APDADFGPGGFAGLTEIFNLDKPVIAAVNXXXXXXXXXXXXXXD 153 F+AG DL AE + A D P +A L + FN KP+IAAVN D Sbjct: 59 FAAGADLNEMAEKDLAATLNDTRPQLWARL-QAFN--KPLIAAVNGYALGAGCELALLCD 115 Query: 154 FIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVN 213 +V +NA F LPE LGI+P +GG RL + + ++ ++MV++G + A++A + G+V+ Sbjct: 116 VVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVS 175 Query: 214 RVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSYIRSGVLKHYPSV 273 V ++ A +LA ++ +PLA+ A K+ R + E+ ++ + R + + + Sbjct: 176 DVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQAGLAQER----QLFTLL 231 Query: 274 LHSEDAIEGPLAFAEKRDPVWKGR 297 +ED EG AF +KR P +KGR Sbjct: 232 AATEDRHEGISAFLQKRTPDFKGR 255 >b1394 putative enzyme {Escherichia coli K12-MG1655} Length = 262 Score = 102 bits (253), Expect = 4e-023 Identities = 71/261 (27%), Positives = 118/261 (45%), Gaps = 23/261 (8%) Query: 49 ILEITLDRP-KANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLK---A 104 ++ +TL+RP + N+ + + ++ E D +R ++TGAG + F AG DL Sbjct: 13 VMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAG-RGFCAGQDLNDRNV 71 Query: 105 AAEGEAPDADFGPGGFAG--LTEIFNLDKPVIAAVNXXXXXXXXXXXXXXDFIVCADNAS 162 G APD F + + L KPVI AVN D ++ A +A Sbjct: 72 DPTGPAPDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAK 131 Query: 163 FALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELM 222 F + +KLG++PD GG LP++ A + + G ++ AE+A WG++ +VV L Sbjct: 132 FVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLA 191 Query: 223 DNARELAQQLVNSAPLAIAALKEIYRTT------SEMPVEESYSYIRSGVLKHYPSVLHS 276 D A++LA+ L + +K+ + +++ +E Y + S Sbjct: 192 DTAQQLARHLATQPTFGLGLIKQAINSAETNTLDTQLDLERDYQRLAG----------RS 241 Query: 277 EDAIEGPLAFAEKRDPVWKGR 297 D EG AF KR P + G+ Sbjct: 242 ADYREGVSAFLAKRSPQFTGK 262 >b2919 putative enzyme (ygfG) {Escherichia coli K12-MG1655} Length = 275 Score = 84.7 bits (208), Expect = 7e-018 Identities = 65/217 (29%), Positives = 96/217 (44%), Gaps = 3/217 (1%) Query: 81 PQLRVAIITG-AGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNX 139 P++R I+ +G K FSAG D+ G + I KP+I+ V Sbjct: 60 PEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG 119 Query: 140 XXXXXXXXXXXXXDFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGR 199 D I+ A ++F++ LG+ + G+ L + IV E++ T Sbjct: 120 SVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKELIFTAS 179 Query: 200 RMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESY 259 + A+ AL GI+N VV EL D ++A + APLAIA +KE R E S Sbjct: 180 PITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGEAHTMNSD 239 Query: 260 SYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKG 296 + R ++ +V SED EG AF EKR P + G Sbjct: 240 EFERIQGMRR--AVYDSEDYQEGMNAFLEKRKPNFVG 274 >b2341 putative enzyme {Escherichia coli K12-MG1655} Length = 714 Score = 83.2 bits (204), Expect = 2e-017 Identities = 64/207 (30%), Positives = 105/207 (50%), Gaps = 15/207 (7%) Query: 45 RNGSILEITLDRP--KANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDL 102 R +I IT+D P K N + A+ + ++ + R++ +LR + A F AG D+ Sbjct: 12 RLDNIAVITIDVPGEKMNTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADI 71 Query: 103 ------KAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNXXXXXXXXXXXXXXDFIV 156 K A E EA G + EI L VIAA++ V Sbjct: 72 NMIGNCKTAQEAEA----LARQGQQLMAEIHALPIQVIAAIHGACLGGGLELALACHGRV 127 Query: 157 CADNAS--FALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNR 214 C D+ LPE +LG++P SGG RLP+++ + EM++TG+++ A++AL+ G+V+ Sbjct: 128 CTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDD 187 Query: 215 VVSQAELMDNARELA-QQLVNSAPLAI 240 VV + L++ A ELA ++ +S PL + Sbjct: 188 VVPHSILLEAAVELAKKERPSSRPLPV 214 >b2262 dihydroxynaphtoic acid synthetase (menB) [4.1.3.36] {Escherichia coli K12-MG1655} Length = 285 Score = 75.9 bits (185), Expect = 3e-015 Identities = 68/262 (25%), Positives = 110/262 (41%), Gaps = 9/262 (3%) Query: 35 KGMSESLHLTRNGSILEITLDRPKA-NAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGE 93 +G + + I +IT++RP+ NA T EM + + R D + V I+TGAG+ Sbjct: 20 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGD 79 Query: 94 KFFSAGWDLKAAAEGEAPDADFGPGGFAGLT---EIFNLDKPVIAAVNXXXXXXXXXXXX 150 K F +G D K + D G L +I KPV+A V Sbjct: 80 KAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHM 139 Query: 151 XXDFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWG 210 D + ADNA F K+G G + +I+ E+ R+ A++AL G Sbjct: 140 MCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMG 199 Query: 211 IVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSYIRSGVLKHY 270 +VN VV A+L ++++ ++P+A+ LK + + +L + Sbjct: 200 LVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYM 259 Query: 271 PSVLHSEDAIEGPLAFAEKRDP 292 +E+ EG AF +KR P Sbjct: 260 -----TEEGQEGRNAFNQKRQP 276 >b3846 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase (fadB) [5.3.3.8] {Escherichia coli K12-MG1655} Length = 729 Score = 72.4 bits (176), Expect = 3e-014 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 12/252 (4%) Query: 49 ILEITLDRP-KANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAE 107 I E+ D P N +D T +GE L+ ++ + + F G D+ Sbjct: 17 IAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLK-GLLLRSNKAAFIVGADITEFLS 75 Query: 108 GEAPDADFGPGGFAGLTEIFN----LDKPVIAAVNXXXXXXXXXXXXXXDFIVCADNASF 163 + +FN L P IAAVN D+ + + Sbjct: 76 LFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRI 135 Query: 164 ALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMD 223 LPE KLGI+P GG +R+P++L E++ G+ +GA++AL+ G+V+ VV +L++ Sbjct: 136 GLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVE 195 Query: 224 NARELAQQLVNSAPLAIAALKEIYRTTSEMPVEESYSY-IRSGVL-----KHYPSVLHSE 277 A+ + +Q +N A + +E + S+ I G++ KHYP+ + + Sbjct: 196 GAKAVLRQAINGDLDWKAKRQPKLEPLKLSKIEATMSFTIAKGMVAQTAGKHYPAPITAV 255 Query: 278 DAIEGPLAFAEK 289 IE F + Sbjct: 256 KTIEAAARFGRE 267 Query= Z0043 probable crotonobetaine/carnitine-CoA ligase (caiC) {Escherichia coli O157:H7 EDL933} (522 letters) Score E Sequences producing significant alignments: (bits) Value b0037 probable crotonobetaine/carnitine-CoA ligase (caiC) [6.3.2... 1034 0.0 b1701 putative ligase/synthetase (ydiD) {Escherichia coli K12-MG... 175 7e-045 b1805 acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase (fa... 163 3e-041 b0594 2,3-dihydroxybenzoate-AMP ligase (entE) [6.3.2.-] {Escheri... 135 5e-033 b4069 acetyl-CoA synthetase (acs) [6.2.1.1] {Escherichia coli K1... 122 4e-029 b0335 putative propionyl-CoA synthetase (prpE) {Escherichia coli... 114 2e-026 b0586 ATP-dependent serine activating enzyme (may be part of ent... 80 3e-016 b2260 o-succinylbenzoate-CoA ligase (menE) [6.2.1.26] {Escherich... 74 2e-014 >b0037 probable crotonobetaine/carnitine-CoA ligase (caiC) [6.3.2.-] {Escherichia coli K12-MG1655} Length = 522 Score = 1034 bits (2673), Expect = 0.0 Identities = 501/522 (95%), Positives = 507/522 (97%) Query: 1 MDRGAMDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFY 60 MDRGAMDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFY Sbjct: 1 MDRGAMDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFY 60 Query: 61 TLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVT 120 TLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL EESAWILQNSQACLLVT Sbjct: 61 TLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESAWILQNSQACLLVT 120 Query: 121 SAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDT 180 SAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDT Sbjct: 121 SAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDT 180 Query: 181 AEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTXXXX 240 AEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCT Sbjct: 181 AEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMA 240 Query: 241 XXXXXXTFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMF 300 TFVLVEKYSARAFWGQVQKYRAT+TECIPMMIRTLMVQPPSAND+QHRLREVMF Sbjct: 241 AFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDQQHRLREVMF 300 Query: 301 YLNLSEQEKDTFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYDAEIRD 360 YLNLSEQEKD FCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGR GFCY+AEIRD Sbjct: 301 YLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRVGFCYEAEIRD 360 Query: 361 DHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFY 420 DHNRPLPAGEIGEICIKG+PGKTIFKEYFLNP+ATAKVLEADGWLHTGDTGYRDEE FFY Sbjct: 361 DHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFY 420 Query: 421 FIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL 480 F+DRRCNMIKRGGENVSCVELENIIA HPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL Sbjct: 421 FVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETL 480 Query: 481 SEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 522 SEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK Sbjct: 481 SEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 522 >b1701 putative ligase/synthetase (ydiD) {Escherichia coli K12-MG1655} Length = 566 Score = 175 bits (443), Expect = 7e-045 Identities = 151/525 (28%), Positives = 233/525 (44%), Gaps = 43/525 (8%) Query: 17 MWDD--LADVYGHKTALICESSGGVVNR----YSYLELNQEINRTANLFYTLGIRKGDKV 70 +W D LAD Y +TA VV+ Y+Y L+ + AN GI GD++ Sbjct: 38 LWGDASLAD-YWQQTARAMPDKIAVVDNHGASYTYSALDHAASCLANWMLAKGIESGDRI 96 Query: 71 ALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQF------ 124 A L EF + KIGA+ VP+ E W+L QA + F Sbjct: 97 AFQLPGWCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPV 156 Query: 125 ---YPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTA 181 P+ Q+ Q L+ I D PA +S + + +L A D+ A Sbjct: 157 DLILPLQNQLPQ-----LQQIVGVDKLAPATSSLSLSQIIADN--TSLTTAITTHGDELA 209 Query: 182 EILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTXXXXX 241 +LFTSGT PKGV++TH N+ + + L DV++ P H Sbjct: 210 AVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAP 269 Query: 242 XXXXXTFVLVEKYSARAFWGQVQKYRATI----TECIPMMIRTLMVQPPSANDRQHRLRE 297 VL++ ++ A +++ R T T + ++ L QP L Sbjct: 270 FLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPAD-------LSA 322 Query: 298 VMFYL---NLSEQEKDTFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSI-GRAGFC 353 + F+L ++ C++ G++LL+ YG TE+ + + R+ G A Sbjct: 323 LRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAG 382 Query: 354 YDAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYR 413 + ++ DD + LP G GE +G +F YF P+ TA+ L+ +GW ++GD Sbjct: 383 VEIKVVDDARKTLPPGCEGEEASRG---PNVFMGYFDEPELTARALDEEGWYYSGDLCRM 439 Query: 414 DEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVV 473 DE G+ R+ ++I RGGEN+S E+E+I+ HPKI D VV + D E A+VV Sbjct: 440 DEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMSDERLGERSCAYVV 499 Query: 474 LN-EGETLSEEEFFR-FCEQNMAKFKVPSYLEIRKDLPRNCSGKI 516 L +LS EE F + +AK+K P ++ + + LPR SGKI Sbjct: 500 LKAPHHSLSLEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTTSGKI 544 >b1805 acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase (fadD) [6.2.1.3] {Escherichia coli K12-MG1655} Length = 561 Score = 163 bits (412), Expect = 3e-041 Identities = 136/497 (27%), Positives = 229/497 (46%), Gaps = 51/497 (10%) Query: 62 LGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTS 121 LG++KGD+VAL + N ++ FG+ + G I+V +N E L +S A +V Sbjct: 69 LGLKKGDRVALMMPNLLQYPVALFGILRAGMIVVNVNPLYTPRELEHQLNDSGASAIVIV 128 Query: 122 AQFYPMYQQIQQEDATQLRHICLT---DVALPADDGVSSFTQL-------KNQQPATLCY 171 + F +++ D T ++H+ LT D A V +F K P + + Sbjct: 129 SNFAHTLEKVV--DKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISF 186 Query: 172 A-------------PPLSTDDTAEILFTSGTTSRPKGVVITHYNL--RFAGYYSAWQCAL 216 P L +D A + +T GTT KG ++TH N+ + + L Sbjct: 187 RSALHNGYRMQYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLL 246 Query: 217 RDD-DVYLTVMPAFHIDCQCTXXXXXXXXXXTFVLVEKYSARAFWGQVQ---KYRATITE 272 ++ +T +P +HI +L+ + R G V+ KY T Sbjct: 247 HPGKELVVTALPLYHIFALTINCLLFIELGGQNLLIT--NPRDIPGLVKELAKYPFTAIT 304 Query: 273 CIPMMIRTLMVQPPSANDRQHRLREVMFYLN------LSEQEKDTFCERFGVRLLTSYGM 326 + + L+ N +L +L+ + + + + + G LL YG+ Sbjct: 305 GVNTLFNALL-----NNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGL 359 Query: 327 TETIVGIIGDRPGD-KRRWPSIGRAGFCYDAEIRDDHNRPLPAGEIGEICIKGVPGKTIF 385 TE ++ P D SIG +A++ DD + +P G+ GE+C+KG + Sbjct: 360 TEC-APLVSVNPYDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKG---PQVM 415 Query: 386 KEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENII 445 Y+ P AT ++++ +GWLHTGD DEEGF +DR+ +MI G NV E+E+++ Sbjct: 416 LGYWQRPDATDEIIK-NGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVV 474 Query: 446 ATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIR 505 HP +Q++ VG+ EA+K FVV + +L+EE FC + + +KVP +E R Sbjct: 475 MQHPGVQEVAAVGVPSGSSGEAVKIFVV-KKDPSLTEESLVTFCRRQLTGYKVPKLVEFR 533 Query: 506 KDLPRNCSGKIIRKNLK 522 +LP++ GKI+R+ L+ Sbjct: 534 DELPKSNVGKILRRELR 550 >b0594 2,3-dihydroxybenzoate-AMP ligase (entE) [6.3.2.-] {Escherichia coli K12-MG1655} Length = 536 Score = 135 bits (341), Expect = 5e-033 Identities = 125/489 (25%), Positives = 202/489 (41%), Gaps = 21/489 (4%) Query: 44 SYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 103 SY ELNQ + A GI+ G+ + L N E +F L K+G V R Sbjct: 50 SYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQR 109 Query: 104 EESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKN 163 E + LL+ Q + ++ + H + V L D G + N Sbjct: 110 SELNAYASQIEPALLIADRQ-HALFSGDDFLNTFVTEHSSIRVVQLLNDSGEHNLQDAIN 168 Query: 164 QQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYL 223 PA A P D+ A + GTT PK + TH + ++ S C YL Sbjct: 169 H-PAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYL 227 Query: 224 TVMPAFHIDCQCTXXXXXXXXXX-TFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLM 282 +PA H + T VL SA + ++K++ +T +P + +L Sbjct: 228 CAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAV-SLW 286 Query: 283 VQPPSANDRQHRLREVMFYLNLSEQEKDTFCERF----GVRLLTSYGMTETIVGIIGDRP 338 +Q + + +L + + T R G +L +GM E G++ Sbjct: 287 LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAE---GLVNYTR 343 Query: 339 GDKRRWPSIGRAGF--CYDAEI--RDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKA 394 D I G+ C D E+ D PLP GE+G + +G F+ Y+ +P+ Sbjct: 344 LDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRG---PYTFRGYYKSPQH 400 Query: 395 TAKVLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDI 454 A +A+G+ +GD D EG+ R + I RGGE ++ E+EN++ HP + Sbjct: 401 NASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYA 460 Query: 455 VVVGIKDSIRDEAIKAFVVLNEG-ETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCS 513 +V ++D + E A++V+ E + F R EQ +A+FK+P +E LP Sbjct: 461 ALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLR--EQGIAEFKLPDRVECVDSLPLTAV 518 Query: 514 GKIIRKNLK 522 GK+ +K L+ Sbjct: 519 GKVDKKQLR 527 >b4069 acetyl-CoA synthetase (acs) [6.2.1.1] {Escherichia coli K12-MG1655} Length = 652 Score = 122 bits (307), Expect = 4e-029 Identities = 129/529 (24%), Positives = 231/529 (43%), Gaps = 34/529 (6%) Query: 26 GHKTALICESSGGVVNRY-SYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCW 84 G +TA+I E +++ SY EL++++ R AN LGI+KGD VA+++ PE Sbjct: 90 GDRTAIIWEGDDASQSKHISYKELHRDVCRFANTLLELGIKKGDVVAIYMPMVPEAAVAM 149 Query: 85 FGLAKIGAIMVPINARLLREESAWILQNSQACLLVTS------AQFYPMYQQI----QQE 134 A+IGA+ I E A + +S + L++TS + P+ + + + Sbjct: 150 LACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITSDEGVRAGRSIPLKKNVDDALKNP 209 Query: 135 DATQLRHICL---TDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTS 191 + T + H+ + T + +G + +Q + A ++ +D IL+TSG+T Sbjct: 210 NVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQASDQHQAEEMNAEDPLFILYTSGSTG 269 Query: 192 RPKGVVITHYN-LRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTXXXXXXXXXXTFVL 250 +PKGV+ T L +A + D+Y + T ++ Sbjct: 270 KPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 Query: 251 VE---KYSARAFWGQV-QKYRATITECIPMMIRTLMVQPPSANDRQHRLR-EVMFYLN-- 303 E + A QV K++ I P IR LM + A + R ++ + Sbjct: 330 FEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 Query: 304 LSEQEKDTFCERFGVR---LLTSYGMTETIVGIIGDRPG-DKRRWPSIGRAGFCYDAEIR 359 ++ + + + ++ G ++ ++ TET +I PG + + S R F + Sbjct: 390 INPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALV 449 Query: 360 DDHNRPLPAGEIGEICIKGV-PG--KTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEE 416 D+ PL G + I PG +T+F ++ + + +GD RDE+ Sbjct: 450 DNEGNPLEGATEGSLVITDSWPGQARTLFGDHERFEQTYFSTFK--NMYFSGDGARRDED 507 Query: 417 GFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNE 476 G+++ R +++ G + E+E+ + HPKI + VVGI +I+ +AI A+V LN Sbjct: 508 GYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNH 567 Query: 477 GETLSEE---EFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 522 GE S E E + + + P L LP+ SGKI+R+ L+ Sbjct: 568 GEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616 >b0335 putative propionyl-CoA synthetase (prpE) {Escherichia coli K12-MG1655} Length = 628 Score = 114 bits (285), Expect = 2e-026 Identities = 128/539 (23%), Positives = 237/539 (43%), Gaps = 55/539 (10%) Query: 30 ALICESSGGVVNR-YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLA 88 ALI SS R +++ +L+ E+N A++ +LG+++GD+V +++ E A Sbjct: 70 ALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAHITLLACA 129 Query: 89 KIGAIMVPINARLLREESAWILQNSQACLLVTS------AQFYPMYQQIQQEDATQL--- 139 +IGAI + A + +++ L+V++ + P Y+++ + +Q Sbjct: 130 RIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIP-YKKLLDDAISQAQHQ 188 Query: 140 -RHICLTDVALPADDGVSS----FTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPK 194 RH+ L D L VS F L++Q L +++T+ IL+TSGTT +PK Sbjct: 189 PRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYTSGTTGKPK 248 Query: 195 GV----------VITHYNLRFAGYY-SAWQCALRDDDVYLTVMPAFHIDCQCTXXXXXXX 243 GV + T + F G S + CA D+ V ++ + Sbjct: 249 GVQRDVGGYAVALATSMDTIFGGKAGSVFFCA---SDIGWVVGHSYIVYAPLLAGMATIV 305 Query: 244 XXXTFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLR--EVMFY 301 L +W V+KY+ + P IR L + P+A R+H L EV++ Sbjct: 306 YEG---LPTWPDCGVWWTIVEKYQVSRMFSAPTAIRVLK-KFPTAEIRKHDLSSLEVLYL 361 Query: 302 LN--LSEQEKDTFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAG---FCYDA 356 L E V ++ +Y TE+ I+ G R +G G + Y+ Sbjct: 362 AGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYNV 421 Query: 357 EIRDD-HNRPLPAGEIGEICIKGV--PG--KTIFKEYFLNPKATAKVLEADGWLHTGDTG 411 ++ ++ P E G + ++G PG +TI+ + K + + T D G Sbjct: 422 QLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDGRFVKTYWSLFSRPVYA-TFDWG 480 Query: 412 YRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAF 471 RD +G+ + + R ++I G + E+E I++HP + ++ VVG+KD+++ + AF Sbjct: 481 IRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPGVAEVAVVGVKDALKGQVAVAF 540 Query: 472 VVLNEGETL--------SEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 522 V+ E ++L E+ + + F P+++ LP+ SGK++R+ ++ Sbjct: 541 VIPKESDSLEDRDVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQ 599 >b0586 ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) (entF) {Escherichia coli K12-MG1655} Length = 1293 Score = 80.1 bits (196), Expect = 3e-016 Identities = 112/509 (22%), Positives = 187/509 (36%), Gaps = 61/509 (11%) Query: 43 YSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL 102 +SY E+ +++ ANL G++ GD VA+ L + + GA +P++ Sbjct: 481 FSYREMREQVVALANLLRERGVKPGDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYP 540 Query: 103 REESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLK 162 + +L++++ LL+T TD LP V + T L Sbjct: 541 DDRLKMMLEDARPSLLIT------------------------TDDQLPRFSDVPNLTSLC 576 Query: 163 NQQPATLCYAPPLSTDD---TAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDD 219 P T + PL TA I+FTSG+T RPKGV++ + + L + Sbjct: 577 YNAPLTPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHYPLTGE 636 Query: 220 DVYLTVMPAFHIDCQCTXXXXXXXXXXTFVLVEKYSAR---AFWGQVQKYRATITECIPM 276 DV P D V+ E + R A +Y T T +P Sbjct: 637 DVVAQKTPC-SFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPS 695 Query: 277 MIRTLM--VQPPSANDRQHRLREVMFYLNLSEQEKDTFCERF----GVRLLTSYGMTETI 330 M+ + + P +A L++V E C + G L YG TE Sbjct: 696 MLAAFVASLTPQTARQSCATLKQVFC---SGEALPADLCREWQQLTGAPLHNLYGPTEAA 752 Query: 331 VGI-----IGDRPGDKR-RWPSIGRAGFCYDAEIRDDHNRPLPAGEIGEICIKGVPGKTI 384 V + G+ R IG + I D P+P G G++ + G+ + Sbjct: 753 VDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGVAGDLYLTGI---QL 809 Query: 385 FKEYFLNPKATAKVLEADGW------LHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSC 438 + Y P TA AD + TGD + G ++ R + +K G+ + Sbjct: 810 AQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRSDDQLKIRGQRIEL 869 Query: 439 VELENIIATHPKIQDIV----VVGIKDSIRDEA--IKAFVVLNEGETLSEEEFFRFCEQN 492 E++ ++ P ++ V V+ + +A + ++V G L + Sbjct: 870 GEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSGLPLDTSALQAQLRET 929 Query: 493 MAKFKVPSYLEIRKDLPRNCSGKIIRKNL 521 + VP L LP + +GK+ RK L Sbjct: 930 LPPHMVPVVLLQLPQLPLSANGKLDRKAL 958 >b2260 o-succinylbenzoate-CoA ligase (menE) [6.2.1.26] {Escherichia coli K12-MG1655} Length = 451 Score = 74.3 bits (181), Expect = 2e-014 Identities = 106/487 (21%), Positives = 185/487 (37%), Gaps = 79/487 (16%) Query: 44 SYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLR 103 ++ EL ++ A+ F G+ +G V L N P+ + W L + GA ++P+N +L + Sbjct: 29 NWRELCARVDELASGFAVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQ 88 Query: 104 EESAWILQN--SQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQL 161 +L N Q L+ +P LT + + +G + T Sbjct: 89 PLLEELLPNLTLQFALVPDGENTFP----------------ALTSLHIQLVEGAHAAT-- 130 Query: 162 KNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDV 221 QP LC + TSG+T PK V T+ + D D Sbjct: 131 --WQPTRLC-----------SMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDD 177 Query: 222 YLTVMPAFHIDCQCTXXXXXXXXXXTFVLVEKYSARAFWGQVQKYRATITECIPMMIRTL 281 +L +P FH+ Q V ++ + G T +P + L Sbjct: 178 WLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAG------CTHASLVPTQLWRL 231 Query: 282 MVQPPSANDRQHRLREVMFYLNLSEQEKDTFCERFGVRLLTSYGMTETIVGIIGDRPGDK 341 +V S + + L + L+EQ ++ G+R YG+TE + Sbjct: 232 LVNRSSVSLKAVLLGGAAIPVELTEQAREQ-----GIRCFCGYGLTEFASTVCAK----- 281 Query: 342 RRWPSIGRAGFCYDAEIRDDHNRPLPAGEI----GEICIKGVPGKTIFKEYFLNPKATAK 397 +A+ D PLP E+ E+ ++ ++ + Y+ N + + Sbjct: 282 -------------EADGLADVGSPLPGREVKIVNNEVWLRAA---SMAEGYWRNGQLVSL 325 Query: 398 VLEADGWLHTGDTGYRDEEGFFYFIDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVV 457 V + +GW T D G G + R N+ GGE + E+E +IA HP + + +V Sbjct: 326 VND-EGWYATRDRG-EMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIV 383 Query: 458 GIKD-SIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVP-SYLEIRKDLPRNCSGK 515 + D + +E LSE + + +A+F+ P +L + +L +N K Sbjct: 384 PVADKEFGHRPVAVMEYDHESVDLSE-----WVKDKLARFQQPVRWLTLPPEL-KNGGIK 437 Query: 516 IIRKNLK 522 I R+ LK Sbjct: 438 ISRQALK 444 Query= Z0044 l-carnitine dehydratase (caiB) {Escherichia coli O157:H7 EDL933} (405 letters) Score E Sequences producing significant alignments: (bits) Value b0038 l-carnitine dehydratase (caiB) [4.2.1.89] {Escherichia col... 810 0.0 b2371 putative enzyme (yfdE) {Escherichia coli K12-MG1655} 95 9e-021 b2374 putative enzyme {Escherichia coli K12-MG1655} 86 3e-018 >b0038 l-carnitine dehydratase (caiB) [4.2.1.89] {Escherichia coli K12-MG1655} Length = 405 Score = 810 bits (2092), Expect = 0.0 Identities = 392/405 (96%), Positives = 392/405 (96%) Query: 1 MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ 60 MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ Sbjct: 1 MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQ 60 Query: 61 LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI 120 LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI Sbjct: 61 LSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVI 120 Query: 121 AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGXXXXXXX 180 AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSG Sbjct: 121 AHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAA 180 Query: 181 XXXXHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYK 240 HK RETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYK Sbjct: 181 LAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYK 240 Query: 241 CADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300 CADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL Sbjct: 241 CADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWL 300 Query: 301 AAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360 A HTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF Sbjct: 301 ATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKF 360 Query: 361 KNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED 405 KNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED Sbjct: 361 KNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED 405 >b2371 putative enzyme (yfdE) {Escherichia coli K12-MG1655} Length = 394 Score = 94.7 bits (234), Expect = 9e-021 Identities = 87/364 (23%), Positives = 148/364 (40%), Gaps = 23/364 (6%) Query: 10 GPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRV-------QPNYPQLS 62 GP GL V+ + GPF Q+ GA VI +E D R Q Y Sbjct: 21 GPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFI 80 Query: 63 RRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAH 122 ++ L++ D + F+ +++ D+ E + + G + E L + NP+L+ A Sbjct: 81 NHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYAS 140 Query: 123 LSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVD-QPMPAFPYTADYFSGXXXXXXXX 181 SGFG G + PAY+TI QA SG +++ G D P+ AD G Sbjct: 141 SSGFGHTG--PLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIV 198 Query: 182 XXXHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKC 241 + ++ +G +DIAM++ L ++ +M Y G+ P+ + PY A ++ Sbjct: 199 SALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGK-SPQRLGNRHPYMAPFDVFNT 257 Query: 242 ADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLA 301 D I + + + L L+ P I R++ ++++ ++ L Sbjct: 258 QDKPITICCGNDKLFSALCQALELTELVNDPRFSSN---ILRVQ--NQAILKQYIERTLK 312 Query: 302 AHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQ--WQTMDGRT-----CKGP 354 R E+ + A +L+V E PQ AR + + M G C P Sbjct: 313 TQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADP 372 Query: 355 NIMP 358 ++MP Sbjct: 373 HVMP 376 >b2374 putative enzyme {Escherichia coli K12-MG1655} Length = 416 Score = 86.3 bits (212), Expect = 3e-018 Identities = 102/414 (24%), Positives = 167/414 (40%), Gaps = 42/414 (10%) Query: 11 PLAGLRVV-FSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPN--------YPQL 61 PL G++V+ F+G++ +GP QM A +GA+VI IE D R Q Y + Sbjct: 4 PLQGIKVLDFTGVQ-SGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTM 62 Query: 62 SRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIA 121 N ++ LN EG+E KL+ DI +E A G T E + + NP+L+ Sbjct: 63 LNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAIDHMGFTWEHIQEINPRLIFG 122 Query: 122 HLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVD-QPMPAFPYTADYFSGXXXXXXX 180 + GF + Y N+ AY +AQA G G D P+ + D +G Sbjct: 123 SIKGFDE--CSPYVNVKAYENVAQAAGGAASTTGFWDGPPLVSAAALGDSNTGMHLLIGL 180 Query: 181 XXXXHKARETGKGESIDIAMYEVMLRMGQYFMMD---------------YFNG--GEMCP 223 +TG+G+ + ++M + +L + + + D Y NG G+ P Sbjct: 181 LAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRLDKLGYLEEYPQYPNGTFGDAVP 240 Query: 224 RMSK----GKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQ 279 R G+ + C ++ + + E K IG + P Sbjct: 241 RGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQNWENTCKAIGKPEWITDPAYSTAHA 300 Query: 280 LIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARES 339 I + + EK + H E + +I CA VL++ E+ +P S Sbjct: 301 RQPHIFDIFAEI--EKYTVTIDKH---EAVAYLTQFDIPCAPVLSMKEISLDPSLRQSGS 355 Query: 340 ITQ-WQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDI 392 + + Q + G+ M KF I + P G TAA+L+ +GYS+++I Sbjct: 356 VVEVEQPLRGKYLTVGCPM-KFSAFTPDI-KAAPLLGEHTAAVLQELGYSDDEI 407 Query= Z0045 probable carnitine operon oxidoreductase (caiA) {Escherichia coli O157:H7 EDL933} (380 letters) Score E Sequences producing significant alignments: (bits) Value b0039 probable carnitine operon oxidoreductase (caiA) [1.3.99.-]... 773 0.0 b1695 putative oxidoreductase {Escherichia coli K12-MG1655} 358 e-100 b4187 putative acyl coenzyme A dehydrogenase (aidB) {Escherichia... 77 2e-015 >b0039 probable carnitine operon oxidoreductase (caiA) [1.3.99.-] {Escherichia coli K12-MG1655} Length = 380 Score = 773 bits (1996), Expect = 0.0 Identities = 380/380 (100%), Positives = 380/380 (100%) Query: 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH 60 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH Sbjct: 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH 60 Query: 61 GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMW 120 GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMW Sbjct: 61 GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMW 120 Query: 121 NSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY 180 NSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY Sbjct: 121 NSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVY 180 Query: 181 TEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE 240 TEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE Sbjct: 181 TEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHE 240 Query: 241 RFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEA 300 RFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEA Sbjct: 241 RFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEA 300 Query: 301 AWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVS 360 AWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVS Sbjct: 301 AWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVS 360 Query: 361 GGSDEMQILTLGRAVLKQYR 380 GGSDEMQILTLGRAVLKQYR Sbjct: 361 GGSDEMQILTLGRAVLKQYR 380 >b1695 putative oxidoreductase {Escherichia coli K12-MG1655} Length = 401 Score = 358 bits (918), Expect = e-100 Identities = 183/382 (47%), Positives = 250/382 (65%), Gaps = 3/382 (0%) Query: 1 MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEH 60 MDF+L +EQEL +A IREL+ + E YF CD++ YP F++ALAD GI L +PEE Sbjct: 19 MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMRALADNGISMLGVPEEF 78 Query: 61 GGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIM-AFRGTGKQM 119 GG+ A +VT ME+ + GAP +++ ++ R G+ EQ+ K + TG Sbjct: 79 GGIPADYVTQMLALMEVSKCGAPAFLITN-GQCIHSMRRFGSAEQLRKTAESTLETGDPA 137 Query: 120 WNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPD-KP 178 + A+TEPGAGSD S TTYTR+NGK+Y+NG K FIT + PY++V+ARD D K Sbjct: 138 YALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAKEYPYMLVLARDPQPKDPKK 197 Query: 179 VYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFD 238 +T W+VD SKPGIK+ L K+G M S CE+ D+VE++E DM G EG GF V F+ Sbjct: 198 AFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEVEESDMVGEEGMGFLNVMYNFE 257 Query: 239 HERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLY 298 ER + A + G A CAFEDAARYANQR+ FG+ IG Q+IQEK A MAIK+++M+NM+ Sbjct: 258 MERLINAARSTGFAECAFEDAARYANQRIAFGKPIGHNQMIQEKLALMAIKIDNMRNMVL 317 Query: 299 EAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDR 358 + AW+AD AA+ K +CA A EV+D A+Q++GG+G R+SRFWRD+R +R Sbjct: 318 KVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEARVSRFWRDVRCER 377 Query: 359 VSGGSDEMQILTLGRAVLKQYR 380 + GG+DE+ I GR +LK Y+ Sbjct: 378 IGGGTDEIMIYVAGRQILKDYQ 399 >b4187 putative acyl coenzyme A dehydrogenase (aidB) {Escherichia coli K12-MG1655} Length = 546 Score = 77.0 bits (188), Expect = 2e-015 Identities = 83/329 (25%), Positives = 143/329 (43%), Gaps = 20/329 (6%) Query: 60 HGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQM 119 H ++AG +L + M A +L LP F + ++ D + G + + Sbjct: 129 HAQVEAG--SLCPITMTFA---ATPLLLQMLPAPFQDWTTPLLSDRYDSHLLPGGQKRGL 183 Query: 120 W-NSAITEPGAGSDVGSLKTTYTR-RNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDK 177 +TE GSDV S T R +G L G K F + ++V +A+ Sbjct: 184 LIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFSVPQSDAHLV-LAQTAGGLSC 242 Query: 178 PVYTEWFVDMSKPGIKVTKL-EKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEE 236 + D + I++ +L +KLG R ++ CE+ F D + G EG G + + Sbjct: 243 FFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDAI---GWLLGLEGEGIRLILKM 299 Query: 237 FDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNM 296 RF AL ++ AF A +A+QR FG + + L++ + MA++L + Sbjct: 300 GGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTAL 359 Query: 297 LYEAAWKADNGTITSGDAAMCKYFCANAAFEV-------VDSAMQVLGGVGIAGNHRISR 349 L+ A +A + + +A + F A F + V AM+VLGG+G + R Sbjct: 360 LFRLA-RAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYCEESELPR 418 Query: 350 FWRDLRVDRVSGGSDEMQILTLGRAVLKQ 378 +R++ V+ + GS + L + R + KQ Sbjct: 419 LYREMPVNSIWEGSGNIMCLDVLRVLNKQ 447 Query= Z0046 probable carnitine transporter (caiT) {Escherichia coli O157:H7 EDL933} (504 letters) Score E Sequences producing significant alignments: (bits) Value b0040 probable carnitine transporter (caiT) {Escherichia coli K1... 985 0.0 b1801 putative transport protein (yeaV) {Escherichia coli K12-MG... 226 4e-060 b0314 high-affinity choline transport (betT) {Escherichia coli K... 149 3e-037 >b0040 probable carnitine transporter (caiT) {Escherichia coli K12-MG1655} Length = 504 Score = 985 bits (2546), Expect = 0.0 Identities = 480/504 (95%), Positives = 481/504 (95%) Query: 1 MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV 60 MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV Sbjct: 1 MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV 60 Query: 61 VMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP 120 VMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP Sbjct: 61 VMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPP 120 Query: 121 FGLEPNSTGAKELGLAYSLFXWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVG 180 FGLEPNSTGAKELGLAYSLF WGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVG Sbjct: 121 FGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVG 180 Query: 181 EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI 240 EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI Sbjct: 181 EKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWI 240 Query: 241 ILNAICVACGLQKGVRIASDVRXYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRM 300 ILNAICVACGLQKGVRIASDVR YLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRM Sbjct: 241 ILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRM 300 Query: 301 LFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVMGLTASTW 360 LFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMV+GLTASTW Sbjct: 301 LFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTW 360 Query: 361 ILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAXLPLSTATMWGFFILCFIATV 420 ILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWA LPLSTATMWGFFILCFIATV Sbjct: 361 ILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATV 420 Query: 421 TLVNACSYTLAMSTCREVRDGEEPPLLVRXXXXXXXXXXXXXXXXXXXXKPIQTAIIAGG 480 TLVNACSYTLAMSTCREVRDGEEPPLLVR KPIQTAIIAGG Sbjct: 421 TLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG 480 Query: 481 CPLFFVNIMVTLSFIKDAKQNWKD 504 CPLFFVNIMVTLSFIKDAKQNWKD Sbjct: 481 CPLFFVNIMVTLSFIKDAKQNWKD 504 >b1801 putative transport protein (yeaV) {Escherichia coli K12-MG1655} Length = 481 Score = 226 bits (575), Expect = 4e-060 Identities = 125/448 (27%), Positives = 221/448 (49%), Gaps = 3/448 (0%) Query: 59 MVVMLFGW-FWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYIS 117 MV++ G +L Y RLG PE+ST SW+FM + ++ L+WG E YY Sbjct: 1 MVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLGSSTLYWGVAEWAYYYQ 60 Query: 118 TPPFGLEPNSTGAKELGLAYSLFXWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVP 177 TP + P S A E + YS F WG WATY+ S+ AY F VRK + + S + Sbjct: 61 TPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAA 120 Query: 178 LVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIIT 237 + G + +G +G +VD +L+A + A+ SL + T + L G+P + A +I Sbjct: 121 ITGVR-PQGPWGKLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVIL 179 Query: 238 CWIILNAICVACGLQKGVRIASDVRXYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYL 297 + + G+ G++ S + + +FL+ V IV FI N +++G+ Sbjct: 180 LSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNF 239 Query: 298 PRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVMGLTA 357 +M +TDP+ G F + WTVFYW WW+ Y +++F+ R+SRGR ++E+ +G+++G T Sbjct: 240 LQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTV 299 Query: 358 STWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAXLPLSTATMWGFFILCFI 417 W + V+ S + +IN+P ++E G A+ + LP + + + I Sbjct: 300 GCWFFFGVMESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMII 359 Query: 418 ATVTLVNACSYTLAMSTCREVRDGEEPPLLVR-XXXXXXXXXXXXXXXXXXXXKPIQTAI 476 + ++A +YT+A ++ R +++G++P +R + ++T + Sbjct: 360 FLASHMDAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTV 419 Query: 477 IAGGCPLFFVNIMVTLSFIKDAKQNWKD 504 + P + ++ FI+ KQ++ D Sbjct: 420 VLTALPFLVILLVKVGGFIRWLKQDYAD 447 >b0314 high-affinity choline transport (betT) {Escherichia coli K12-MG1655} Length = 677 Score = 149 bits (377), Expect = 3e-037 Identities = 100/378 (26%), Positives = 181/378 (47%), Gaps = 14/378 (3%) Query: 1 MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMV 60 + + + K I P VF+ ++ + T+ D + + I +V+ +GW + Sbjct: 4 LSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLLAAT 63 Query: 61 VMLFGWFWLVFGPYAKKRLGNEP--PEFSTASWIFMMFASCTSAAVLFWGSIEIYYYIST 118 + + + + +LG E PEFS SW M+FA+ ++F+ E Sbjct: 64 LYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQ 123 Query: 119 PPFGLEPNSTGAKELGLAYSLFXWGPLPWATYSFLSVAFAYFFFVRKMEV-IRPSSTLVP 177 PP G A++ + ++LF +G W+ Y+ + +A YF + + + IR S L P Sbjct: 124 PPEGAGQTIEAARQ-AMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIR--SALYP 180 Query: 178 LVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIIT 237 + G K G G VD ++ IF + T+LG+ + + LF IP ++ A +I Sbjct: 181 IFG-KRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIA 239 Query: 238 CWIILNAICVACGLQKGVRIASDVRXYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYL 297 +I+ I V G+ KG+R+ S++ L+ ++ +V + SF++N +VG + Sbjct: 240 LSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRF 299 Query: 298 PRMLF----YTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVM 353 M + P+ + WT+F+WAWWV ++ + +FLARISRGRT+R+ G ++ Sbjct: 300 MGMTLNSFAFDRPVE---WMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLI 356 Query: 354 GLTASTWILWTVLGSNTL 371 T + +V G++ L Sbjct: 357 IPFTFTLLWLSVFGNSAL 374 Query= Z0047 probable flavoprotein subunit, carnitine metabolism (fixA) {Escherichia coli O157:H7 EDL933} (268 letters) Score E Sequences producing significant alignments: (bits) Value b0041 probable flavoprotein subunit, carnitine metabolism (fixA)... 476 e-136 b1697 putative transport protein (ydiQ) {Escherichia coli K12-MG... 237 7e-064 >b0041 probable flavoprotein subunit, carnitine metabolism (fixA) {Escherichia coli K12-MG1655} Length = 268 Score = 476 bits (1224), Expect = e-136 Identities = 250/268 (93%), Positives = 250/268 (93%) Query: 1 MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQL 60 MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQL Sbjct: 1 MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQL 60 Query: 61 KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEXXXXXXXXXXXXXXX 120 KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFE Sbjct: 61 KQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAA 120 Query: 121 XXXGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETE 180 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETE Sbjct: 121 QKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETE 180 Query: 181 TLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPK 240 TLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPK Sbjct: 181 TLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPK 240 Query: 241 QRERQRIVIEGDGEEQIAAFAENLRKVI 268 QRERQRIVIEGDGEEQIAAFAENLRKVI Sbjct: 241 QRERQRIVIEGDGEEQIAAFAENLRKVI 268 >b1697 putative transport protein (ydiQ) {Escherichia coli K12-MG1655} Length = 254 Score = 237 bits (604), Expect = 7e-064 Identities = 132/257 (51%), Positives = 170/257 (66%), Gaps = 5/257 (1%) Query: 13 MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTAL 72 MKIITC+K VP+EQDI V + +L+F ADAKISQ+DLNAIEAA QL + ++ AL Sbjct: 1 MKIITCFKLVPEEQDIVVT-PEYTLNFDNADAKISQFDLNAIEAASQLATD--DDEIAAL 57 Query: 73 SVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEXXXXXXXXXXXXXXXXXXGFDLILCGD 132 +VGG L N+K RKDVLSRGP L +V D Q E GFDL++ G+ Sbjct: 58 TVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLIFGE 117 Query: 133 GSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAV 192 GS DLYAQQVGLLVGEIL +P +N VS I +TL +ER LED+ E + + +PAV+ V Sbjct: 118 GSGDLYAQQVGLLVGEILQLPVINAVSAI-QRQGNTLVIERTLEDDVEVIELSVPAVLCV 176 Query: 193 STDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSE-QQVAAPKQRERQRIVIEG 251 ++DIN P+IPSMKAILGA KKPV W A+DI ++ A +E + P Q ER+ I+I+ Sbjct: 177 TSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAELVGIRVPPQTERKHIIIDN 236 Query: 252 DGEEQIAAFAENLRKVI 268 D E IA AE+L+K + Sbjct: 237 DSPEAIAELAEHLKKAL 253 Query= Z0048 probable flavoprotein subunit, carnitine metabolism (fixB) {Escherichia coli O157:H7 EDL933} (313 letters) Score E Sequences producing significant alignments: (bits) Value b0042 probable flavoprotein subunit, carnitine metabolism (fixB)... 610 e-176 b1698 putative flavoprotein (ydiR) {Escherichia coli K12-MG1655} 270 9e-074 b2769 putative flavoprotein (ygcQ) {Escherichia coli K12-MG1655} 71 1e-013 >b0042 probable flavoprotein subunit, carnitine metabolism (fixB) {Escherichia coli K12-MG1655} Length = 313 Score = 610 bits (1574), Expect = e-176 Identities = 311/313 (99%), Positives = 311/313 (99%) Query: 1 MNTFSQVWVFSDTPSRLPELMNGAQALANQINAFVLNDADGAQAIQLGANHVWKLNGKPD 60 MNTFSQVWVFSDTPSRLPELMNGAQALANQIN FVLNDADGAQAIQLGANHVWKLNGKPD Sbjct: 1 MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPD 60 Query: 61 DRMIEDYASVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGK 120 DRMIEDYA VMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGK Sbjct: 61 DRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGK 120 Query: 121 ATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRT 180 ATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRT Sbjct: 121 ATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRT 180 Query: 181 ATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH 240 ATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH Sbjct: 181 ATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEH 240 Query: 241 ERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDA 300 ERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDA Sbjct: 241 ERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDA 300 Query: 301 VKILPALTAALAR 313 VKILPALTAALAR Sbjct: 301 VKILPALTAALAR 313 >b1698 putative flavoprotein (ydiR) {Escherichia coli K12-MG1655} Length = 312 Score = 270 bits (690), Expect = 9e-074 Identities = 143/315 (45%), Positives = 203/315 (64%), Gaps = 5/315 (1%) Query: 1 MNTFSQVWVFSDTPSRLPELMNGAQALANQINAFVLNDADGAQAIQ-LGANHVWKLNGKP 59 M+ + VWVFSD P R EL GAQ Q+ A V N D AQA+ G ++ L Sbjct: 1 MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQN-TDQAQAVMPYGPKCLYVLAQND 59 Query: 60 DDRMIEDYASVMADTIR-QHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQD 118 + E+YA +A ++ +H A ++LL T+RGK LAA+L +L AA+ NDA+ V + D Sbjct: 60 ALQRTENYAESIAALLKDKHPA--MLLLAATKRGKALAARLSVQLNAALVNDATAVDIVD 117 Query: 119 GKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAIT 178 G +H +YGGLA +E+I +P A++T++ G + D S T TV + AP I Sbjct: 118 GHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSHQCPTETVPYVAPRHEIL 177 Query: 179 RTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWM 238 +A+ ++SVDL KA+ VV VGRG+ +++++ + +L + AE+ CSRP+AE E WM Sbjct: 178 CRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWM 237 Query: 239 EHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVG 298 E ERY+G+S ++LK +LYL +GISGQIQHMVG N ++ I AINKDKNAPIF YADYG+VG Sbjct: 238 ERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVG 297 Query: 299 DAVKILPALTAALAR 313 D K++PAL + L+R Sbjct: 298 DIYKVVPALISQLSR 312 >b2769 putative flavoprotein (ygcQ) {Escherichia coli K12-MG1655} Length = 297 Score = 70.9 bits (172), Expect = 1e-013 Identities = 83/293 (28%), Positives = 132/293 (45%), Gaps = 22/293 (7%) Query: 21 MNGAQALANQINAFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYASVMADTIRQHGA 80 MN A NQ NA + + H W++ +P + E + + ++ A Sbjct: 12 MNIAIVTINQENAAIASWLAAQDFSGCTLAH-WQI--EPQPVVAEQVLDALVEQWQRTPA 68 Query: 81 DGLVLLPNTRRGKLLAAKLGYRLKAA-----VSNDASTVSVQDGKATVKHMVYGGLAIGE 135 D +VL P G L+ +L +RL A S D TVSV+ + G A+ Sbjct: 69 D-VVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKS--------HWGNAL-T 118 Query: 136 ERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVD-LDK 194 + T L +S A +A+ + A+ +T+ ++ + D L + Sbjct: 119 ATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAE 178 Query: 195 ARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPE 254 AR V+ VG+G G +N +A L + +GAE+ SR N ++ E+ +GIS +L PE Sbjct: 179 ARRVLVVGQG-GEADNQEIA-MLAEKLGAEVGYSRARVMNGG-VDAEKVIGISGHLLAPE 235 Query: 255 LYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPAL 307 + + VG SG M G S+ + AIN D +A +F AD G+V D +L AL Sbjct: 236 VCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEAL 288 Query= Z0049 flavoprotein electron transport (fixC) {Escherichia coli O157:H7 EDL933} (428 letters) Score E Sequences producing significant alignments: (bits) Value b0043 flavoprotein; electron transport (fixC) {Escherichia coli ... 795 0.0 b1699 flavoprotein; probably electron transport (ydiS) {Escheric... 497 e-142 b2766 orf, hypothetical protein (ygcN) {Escherichia coli K12-MG1... 300 2e-082 >b0043 flavoprotein; electron transport (fixC) {Escherichia coli K12-MG1655} Length = 428 Score = 795 bits (2052), Expect = 0.0 Identities = 407/428 (95%), Positives = 409/428 (95%) Query: 1 MSEDIFDXXXXXXXXXXXXXXXXXXREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60 MSEDIFD REGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP Sbjct: 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60 Query: 61 GFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE 120 GFA+SAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE Sbjct: 61 GFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE 120 Query: 121 AGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTN 180 AGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPT+ Sbjct: 121 AGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTD 180 Query: 181 VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG 240 VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG Sbjct: 181 VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG 240 Query: 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA 300 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA Sbjct: 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA 300 Query: 301 GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDM 360 GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDM Sbjct: 301 GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDM 360 Query: 361 RMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKIXRHGKKVGFINLIKD 420 RMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKI RHGKKVGFINLIKD Sbjct: 361 RMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKD 420 Query: 421 GMKGVTVL 428 GMKGVTVL Sbjct: 421 GMKGVTVL 428 >b1699 flavoprotein; probably electron transport (ydiS) {Escherichia coli K12-MG1655} Length = 429 Score = 497 bits (1279), Expect = e-142 Identities = 248/429 (57%), Positives = 317/429 (73%), Gaps = 1/429 (0%) Query: 1 MSEDIFDXXXXXXXXXXXXXXXXXXREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60 MS+D FD R G VLVIERG+SAG KN+TGGRLYAH+LE IIP Sbjct: 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIP 60 Query: 61 GFAESAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEE 120 GFA SAPVER +T EK++F+TE+SA+T+D+ P SY+VLR++ D WLMEQAE+ Sbjct: 61 GFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQ 120 Query: 121 AGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTN 180 AGAQ I G+RVD LV+ KV GV+A D++EA VILADGVNS+L LGM P + Sbjct: 121 AGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSMLGRSLGMVPASDPHH 180 Query: 181 VAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCG 240 AVGVKE+I L I DRF + G +GAA LFAGSP+DGLMGGGFLYTN++++SLGLVCG Sbjct: 181 YAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTNKDSISLGLVCG 240 Query: 241 LHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIA 300 L + A+KSVPQMLEDFKQHPA+ PLI+GGKL+EYSAH+VPE G+ M+P+LV +GV+I Sbjct: 241 LGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNEGVMIV 300 Query: 301 GDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLE-SGPLRD 359 GDAAG C+NLGFT+RGMDLAIA+ +AAA TV++A + DFS LA+Y++ LE S +RD Sbjct: 301 GDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKERADFSASSLAQYKRELEQSCVMRD 360 Query: 360 MRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKIXRHGKKVGFINLIK 419 M+ ++K+PA ++NPR+FS YP + + ++FTIDG + +RK I H KK+G INL+K Sbjct: 361 MQHFRKIPALMENPRLFSQYPRMVADIMNEMFTIDGKPNQPVRKMIMGHAKKIGLINLLK 420 Query: 420 DGMKGVTVL 428 DG+KG T L Sbjct: 421 DGIKGATAL 429 >b2766 orf, hypothetical protein (ygcN) {Escherichia coli K12-MG1655} Length = 433 Score = 300 bits (767), Expect = 2e-082 Identities = 160/405 (39%), Positives = 244/405 (60%), Gaps = 8/405 (1%) Query: 26 REGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFAESAPVERLITHEKLAFMTEKSA 85 R G VL++ER G+KN++GGRLY H+L ++P F +AP+ER ITHE L+ +T Sbjct: 35 RAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGV 94 Query: 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVE 145 T P S+SVLR++FD WL+ +AE+ G + I G VD L + +G+V GV Sbjct: 95 TTFS-----SLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVI 149 Query: 146 ADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTNVAVGVKELIELPKSVIEDRFQLQGN 205 D++ A+ V+LA+G NS+LAE+ G+ R +A+G+KE++ L S IE+RF L+ N Sbjct: 150 CGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENN 209 Query: 206 QGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVA 265 +GAA LF+G D L GG FLYTN+ TLSLG+VC L L ++ ++L FK HPAV Sbjct: 210 EGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVR 269 Query: 266 PLIAGGKLVEYSAHVVPEAGINMLP-ELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAG 324 PLI + +EY AH+VPE G++ +P + G+G L+ GDA C+N G ++RGMD+A+ Sbjct: 270 PLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGA 329 Query: 325 EAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRD-MRMYQKLPAFLDNPRMFSGYPELA 383 +AAA+T++SA + + + Y ++E L D ++ YQ +PA L P + +P L Sbjct: 330 QAAAQTLISACQHRE-PQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALM 388 Query: 384 VGVARDLFTIDGSAPELMRKKIXRHGKKVGFINLIKDGMKGVTVL 428 ++RDL+ +R+ H ++ G +L D ++ + L Sbjct: 389 QDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL 433 Query= Z0050 putative ferredoxin (fixX) {Escherichia coli O157:H7 EDL933} (95 letters) Score E Sequences producing significant alignments: (bits) Value b0044 putative ferredoxin (fixX) {Escherichia coli K12-MG1655} 201 6e-054 b1700 orf, hypothetical protein (ydiT) {Escherichia coli K12-MG1... 134 1e-033 b2767 orf, hypothetical protein (ygcO) {Escherichia coli K12-MG1... 86 4e-019 >b0044 putative ferredoxin (fixX) {Escherichia coli K12-MG1655} Length = 95 Score = 201 bits (512), Expect = 6e-054 Identities = 95/95 (100%), Positives = 95/95 (100%) Query: 1 MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY 60 MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY Sbjct: 1 MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDY 60 Query: 61 AGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG 95 AGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG Sbjct: 61 AGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG 95 >b1700 orf, hypothetical protein (ydiT) {Escherichia coli K12-MG1655} Length = 97 Score = 134 bits (337), Expect = 1e-033 Identities = 58/91 (63%), Positives = 72/91 (79%) Query: 5 VNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCL 64 VNVD+KLGVNKF+VDE HPHI++ + D L+KACPAGLYK+ D G++ FD AGCL Sbjct: 7 VNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKACPAGLYKQDDAGNIHFDSAGCL 66 Query: 65 ECGTCRILGLGSALEQWEYPRGTFGVEFRYG 95 ECGTCR+L + LEQW+YP GTFG++FRYG Sbjct: 67 ECGTCRVLCGNTILEQWQYPAGTFGIDFRYG 97 >b2767 orf, hypothetical protein (ygcO) {Escherichia coli K12-MG1655} Length = 98 Score = 86.3 bits (212), Expect = 4e-019 Identities = 36/73 (49%), Positives = 48/73 (65%) Query: 23 PHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWE 82 PHIV ++Q E L+ ACPAGL+ +G++R DY CLECGTCR+L S L+QW Sbjct: 26 PHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWR 85 Query: 83 YPRGTFGVEFRYG 95 YP FG+ +R+G Sbjct: 86 YPPSGFGITYRFG 98 Query= Z0051 putative transport protein (yaaU) {Escherichia coli O157:H7 EDL933} (443 letters) Score E Sequences producing significant alignments: (bits) Value b0045 putative transport protein (yaaU) {Escherichia coli K12-MG... 860 0.0 b2771 putative transport protein (ygcS) {Escherichia coli K12-MG... 255 4e-069 b2943 galactose-proton symport of transport system (galP) {Esche... 124 1e-029 b2841 low-affinity L-arabinose transport system proton symport p... 106 3e-024 b4031 xylose-proton symport (xylE) {Escherichia coli K12-MG1655} 97 2e-021 b1775 putative transport protein {Escherichia coli K12-MG1655} 96 6e-021 b1769 putative transport protein (ydjE) {Escherichia coli K12-MG... 87 2e-018 b4111 low-affinity transport system; proline permease II (proP) ... 63 4e-011 b4279 putative transport protein (yjhB) {Escherichia coli K12-MG... 60 2e-010 b2587 alpha-ketoglutarate permease (kgtP) {Escherichia coli K12-... 59 8e-010 b0353 putative transport protein (mhpT) {Escherichia coli K12-MG... 59 8e-010 b3523 putative transport protein (yhjE) {Escherichia coli K12-MG... 58 1e-009 b3691 D-galactonate transport (dgoT) {Escherichia coli K12-MG1655} 55 7e-009 b1543 putative transport protein {Escherichia coli K12-MG1655} 55 9e-009 b3224 sialic acid transporter (nanT) {Escherichia coli K12-MG1655} 54 2e-008 b2686 multidrug resistance; probably membrane translocase (emrB)... 47 3e-006 >b0045 putative transport protein (yaaU) {Escherichia coli K12-MG1655} Length = 443 Score = 860 bits (2222), Expect = 0.0 Identities = 431/443 (97%), Positives = 432/443 (97%) Query: 1 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYILVMIGVALEQLTPALKLDADWIXXXXX 60 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGY+LVMIGVALEQLTPALKLDADWI Sbjct: 1 MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGA 60 Query: 61 XXXXXXFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVI 120 FVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVI Sbjct: 61 GTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVI 120 Query: 121 GADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAA 180 GADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAA Sbjct: 121 GADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAA 180 Query: 181 IPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRR 240 IPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRR Sbjct: 181 IPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRR 240 Query: 241 HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPM 300 HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPM Sbjct: 241 HFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPM 300 Query: 301 LWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPN 360 LWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPN Sbjct: 301 LWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPN 360 Query: 361 ELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAF 420 ELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAF Sbjct: 361 ELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAF 420 Query: 421 APETRGMSLAQTSNMTIRGQRMG 443 APETRGMSLAQTSNMTIRGQRMG Sbjct: 421 APETRGMSLAQTSNMTIRGQRMG 443 >b2771 putative transport protein (ygcS) {Escherichia coli K12-MG1655} Length = 469 Score = 255 bits (652), Expect = 4e-069 Identities = 143/431 (33%), Positives = 234/431 (54%), Gaps = 7/431 (1%) Query: 8 DDLKFSSIHRRILLWGSGGPFLDGYILVMIGVALEQLTPALKLDADWIXXXXXXXXXXXF 67 DDL + H RI G DGY+L +IG A+ QLTPA++L F Sbjct: 33 DDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLF 92 Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIA 127 +G+ + G+ISD +GR+K+F + I + S F ++P L+ +R+LIGI +G DY + Sbjct: 93 LGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVG 152 Query: 128 TSMITEFSSTRQRAFSISFIAAMWYVGATCADLVG-YWLYDVEGGWRWMLGSAAIPCLLI 186 +++ EFS R R + + +W VG A + G +++ + WRW+L SAA+P LLI Sbjct: 153 HTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLI 212 Query: 187 LIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQT--RFRDLFNRRHFPF 244 + R+ PESPRWLLR+GR E ++ + FG V +E T + LF+ R++ Sbjct: 213 TLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRR 272 Query: 245 VLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLN 304 F + + C VIP F IYT+ P I +GL ++A +++++ ++G + ++ + Sbjct: 273 TAFNSVFFVCLVIPWFVIYTWLPTIAQTIGL---EDALTASLMLNALLIVGALLGLVLTH 329 Query: 305 TAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFP 364 R L+GSF ++ L V+ +P G L ++ F +++ NL + P E FP Sbjct: 330 LLAHRKFLLGSFLLLAATLVVMACLPS-GSSLTLLLFVLFSTTISAVSNLVGILPAESFP 388 Query: 365 TDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPET 424 TDIR+ VG ++SR+G VST LP + +G+ T+L+ A + L G +++ +APET Sbjct: 389 TDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPET 448 Query: 425 RGMSLAQTSNM 435 + + L N+ Sbjct: 449 KALPLVAAGNV 459 >b2943 galactose-proton symport of transport system (galP) {Escherichia coli K12-MG1655} Length = 464 Score = 124 bits (312), Expect = 1e-029 Identities = 99/396 (25%), Positives = 176/396 (44%), Gaps = 26/396 (6%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIA 127 VG G++S K+GR+K +I I S+ + + L++ RVL+G+ +G A Sbjct: 67 VGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLLGLAVGVASYTA 126 Query: 128 TSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVE----GGWRWMLGSAAIPC 183 ++E + + R IS M +G ++G +L D G WRWMLG IP Sbjct: 127 PLYLSEIAPEKIRGSMISMYQLMITIG-----ILGAYLSDTAFSYTGAWRWMLGVIIIPA 181 Query: 184 LLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEE--------QPQQTRFRD 235 +L+LIG F LP+SPRW K R + E ++++L E Q +Q+ + Sbjct: 182 ILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQSGWAL 241 Query: 236 LFNRRHFPFVLFVAAIWTC--QVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFM 293 +F +F+ + Q M I + P+I L G G V++ L + Sbjct: 242 FKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVGLTNV 301 Query: 294 LGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGI-------WLVVMAFAVYAF 346 L + ++ GR+P L F +M + VLG + +GI + + M Sbjct: 302 LATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSAQYFAIAMLLMFIVG 361 Query: 347 FSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMG 406 F+ G L W+ +E+ P R + + + I ++ +N G +NT + Sbjct: 362 FAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATFLTMLNTLGNANTFWVY 421 Query: 407 AGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRM 442 A +++ +L+++ PET+ +SL ++G+++ Sbjct: 422 AALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKL 457 >b2841 low-affinity L-arabinose transport system proton symport protein (araE) [5.3.1.4] {Escherichia coli K12-MG1655} Length = 472 Score = 106 bits (265), Expect = 3e-024 Identities = 96/400 (24%), Positives = 172/400 (43%), Gaps = 31/400 (7%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIA 127 +G G++S ++GR+ + I + S+ + F +S L+ RV++GI +G A Sbjct: 74 IGALFNGWLSFRLGRKYSLMAGAILFVLGSIGSAFATSVEMLIAARVVLGIAVGIASYTA 133 Query: 128 TSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLIL 187 ++E +S R IS M +G A L + G WR MLG A+P +L++ Sbjct: 134 PLYLSEMASENVRGKMISMYQLMVTLGIVLAFLSDT-AFSYSGNWRAMLGVLALPAVLLI 192 Query: 188 IGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEE-----------QPQQTRFRDL 236 I LP SPRWL KGR E EE++ L EE Q F+ Sbjct: 193 ILVVFLPNSPRWLAEKGRHIEAEEVLRMLRDTSEKAREELNEIRESLKLKQGGWALFKIN 252 Query: 237 FNRRHFPFV-LFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLG 295 N R F+ + + A+ Q M I + P+I + G + + +V+ L FM Sbjct: 253 RNVRRAVFLGMLLQAMQ--QFTGMNIIMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFA 310 Query: 296 CIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGL-------------IPDMGIWLVVMAFA 342 + ++ AGR+P L F++M L VLG + + + + +M A Sbjct: 311 TFIAVFTVDKAGRKPALKIGFSVMALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIA 370 Query: 343 VYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNT 402 YA S P + W+ +E+ P R + + + + ++ +++ G + T Sbjct: 371 GYA-MSAAP--VVWILCSEIQPLKCRDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGT 427 Query: 403 MLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRM 442 + +++ + I+ PET+ ++L + G+++ Sbjct: 428 FWLYTALNIAFVGITFWLIPETKNVTLEHIERKLMAGEKL 467 >b4031 xylose-proton symport (xylE) {Escherichia coli K12-MG1655} Length = 491 Score = 97.1 bits (240), Expect = 2e-021 Identities = 97/411 (23%), Positives = 176/411 (42%), Gaps = 54/411 (13%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFV-----------SSPV-------EL 109 +G +L GY S++ GRR I + + V + + + PV E Sbjct: 70 IGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEF 129 Query: 110 LVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWL---- 165 ++ R++ GI +G ++ I E + R +SF G V Y++ Sbjct: 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG 189 Query: 166 ---YDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVA 222 + GWR+M S IP LL L+ + +PESPRWL+ +G+ ++ E ++ K+ G +A Sbjct: 190 DASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLA 249 Query: 223 FDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYT----------FGPQIVGL 272 Q Q L + R L + + + M +I+ + P++ Sbjct: 250 ---TQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 Query: 273 LGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPL-LIG----SFAMMTLALAVLG 327 LG A L +++ + + + ++ ++ GR+PL +IG + M +L A Sbjct: 307 LGAST-DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT 365 Query: 328 LIPDMGIWLVVMAFAVYAF-FSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVS 386 P + + L+ M F V AF S GP + W+ +E+FP IR A+ + ++ + Sbjct: 366 QAPGI-VALLSMLFYVAAFAMSWGP--VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFV 422 Query: 387 TWALPIFINNYGISNTMLMGAGISLFGLLISVA------FAPETRGMSLAQ 431 +W P+ N + G ++G + +A F PET+G +L + Sbjct: 423 SWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 >b1775 putative transport protein {Escherichia coli K12-MG1655} Length = 459 Score = 95.5 bits (236), Expect = 6e-021 Identities = 94/397 (23%), Positives = 174/397 (43%), Gaps = 46/397 (11%) Query: 67 FVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVM-RVLIGIVIGADYP 125 F+G + G I DK GRR F++ AI + S+ S ++ L+ R ++G+ +GA Sbjct: 72 FLGALVGGIIGDKTGRRNAFIL-YEAIHIASMVVGAFSPNMDFLIACRFVMGVGLGALLV 130 Query: 126 IATSMITEFSSTRQR---AFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIP 182 + TE+ R R + +SFI Y + + L E WR L IP Sbjct: 131 TLFAGFTEYMPGRNRGTWSSRVSFIGNWSYPLCSLIAMGLTPLISAEWNWRVQL---LIP 187 Query: 183 CLLILIGRF----ELPESPRWLLRKGRVKECEEMM-------IKLFGEP-----VAFDEE 226 +L LI PESPRWL +GR +E E++M I+ G+P +A D + Sbjct: 188 AILSLIATALAWRYFPESPRWLESRGRYQEAEKVMRSIEEGVIRQTGKPLPPVVIADDGK 247 Query: 227 QPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNV 286 PQ + L V+ + + + + + + P I G+ + K++ + N Sbjct: 248 APQAVPYSALLTGVLLKRVILGSCVLIAMNVVQYTLINWLPTIFMTQGINL-KDSIVLNT 306 Query: 287 VISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLG----------LIPDMGIWL 336 + G ML ++ R+ + +G + + +AVLG LI +G +L Sbjct: 307 MSMFGAPFGIFIAMLVMDKIPRKTMGVG----LLILIAVLGYIYSLQTSMLLITLIGFFL 362 Query: 337 VVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINN 396 + + + S +Y E++PT+ + G+ ++ RI I + +A+ + +++ Sbjct: 363 ITFVYMYVCYASA-------VYVPEIWPTEAKLRGSGLANAVGRISGIAAPYAVAVLLSS 415 Query: 397 YGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTS 433 YG++ ++ +S+ + ET+G+S+ S Sbjct: 416 YGVTGVFILLGAVSIIVAIAIATIGIETKGVSVESLS 452 >b1769 putative transport protein (ydjE) {Escherichia coli K12-MG1655} Length = 452 Score = 87.0 bits (214), Expect = 2e-018 Identities = 102/398 (25%), Positives = 177/398 (44%), Gaps = 46/398 (11%) Query: 67 FVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPI 126 F+G+ G+I D GRR+ F I+++ +G+ + FV L+ R L+G +GA + Sbjct: 71 FIGSLTGGFIGDYFGRRRAFRINLLIVGIAATGAAFVPDMYWLIFFRFLMGTGMGALIMV 130 Query: 127 ATSMITEFSSTRQR---AFSISFIAAMWYVGATCADLVGYWLYDVEGGWR--WMLGSAAI 181 + TEF R + +SF+ + + +V + WR ++LG I Sbjct: 131 GYASFTEFIPATVRGKWSARLSFVGNWSPMLSAAIGVVVIAFF----SWRIMFLLGGIGI 186 Query: 182 PCLLILIGRFELPESPRWLLRKGRV--KECE----------EMMIKLFGEPVAFDEEQPQ 229 L G++ + ESPRWL KG++ EC+ E I+L P+ + + Sbjct: 187 LLAWFLSGKYFI-ESPRWLAGKGQIAGAECQLREVEQQIEREKSIRL--PPLTSYQSNSK 243 Query: 230 ----QTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGN 285 + F LF L + I ++ I + P I G+ V K + L Sbjct: 244 VKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTITVWIPTIFVNSGIDVDK-SILMT 302 Query: 286 VVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMG-------IWLVV 338 VI + +G L ++ RR L GS + + +AVLG I + I+ +V Sbjct: 303 AVIMIGAPVGIFIAALIIDHFPRR--LFGS--TLLIIIAVLGYIYSIQTTEWAILIYGLV 358 Query: 339 MAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYG 398 M F +Y + +Y EL+PT +R G + ++ RI + + + + + +YG Sbjct: 359 MIFFLYMYVCFASA----VYIPELWPTHLRLRGSGFVNAVGRIVAVFTPYGVAALLTHYG 414 Query: 399 -ISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNM 435 I+ M++G + L L++S+ F ETR +SL + S + Sbjct: 415 SITVFMVLGVMLLLCALVLSI-FGIETRKVSLEEISEV 451 >b4111 low-affinity transport system; proline permease II (proP) {Escherichia coli K12-MG1655} Length = 500 Score = 62.8 bits (151), Expect = 4e-011 Identities = 87/389 (22%), Positives = 170/389 (43%), Gaps = 38/389 (9%) Query: 68 VGTSLFGYISDKVGRRKMFLIDII-------AIGVI-SVATMFVSSPVELLVMRVLIGIV 119 +G FG + DK GR+K+ I I+ IG+I S T+ + +P+ LL+ ++ G Sbjct: 81 LGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFS 140 Query: 120 IGADYPIATSMITEFSSTRQRAFSISFI----AAMWYVGATCADLVGYWLYD---VEGGW 172 +G +Y A+ + E+S R+R F S++ A + +GA L+ + + ++ GW Sbjct: 141 VGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGW 200 Query: 173 RWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTR 232 R A ++ L R L E+P + ++++ + ++ G V+F E Sbjct: 201 RIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQ-DGPKVSFKE------- 252 Query: 233 FRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFF 292 +++ +L + + + + T+ P + L ++ + ++ + Sbjct: 253 ----IATKYWRSLLTCIGLVIATNVTYYMLLTYMPSYLS-HNLHYSEDHGVLIIIAIMIG 307 Query: 293 MLGCIPPM-LWLNTAGRRP-LLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGG 350 ML P M L + GRRP +L+GS A+ LA+ LI I L+ + A Sbjct: 308 MLFVQPVMGLLSDRFGRRPFVLLGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNC 367 Query: 351 PGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGIS 410 + +FPT IR SA+ ++S + ++ + + S ++M A Sbjct: 368 FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVES---SQNLMMPA--- 421 Query: 411 LFGLLISVAFAPETRGMSLAQTSNMTIRG 439 L+ VA G+++ +T+N ++G Sbjct: 422 --YYLMVVAVVGLITGVTMKETANRPLKG 448 >b4279 putative transport protein (yjhB) {Escherichia coli K12-MG1655} Length = 425 Score = 60.5 bits (145), Expect = 2e-010 Identities = 78/362 (21%), Positives = 144/362 (39%), Gaps = 51/362 (14%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIA 127 +G FG ++DK GR+ M + I V + + ++ L V R ++G+ + +Y A Sbjct: 85 IGGGFFGAMADKYGRKPMMMWAIFIYSVGTGLSGIATNLYMLAVCRFIVGLGMSGEYACA 144 Query: 128 TSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLIL 187 ++ E ++ + +F+ + + VG A + +V GWR +P LL+L Sbjct: 145 STYAVESWPKNLQSKASAFLVSGFSVGNIIAAQIIPQFAEVY-GWRNSFFIGLLPVLLVL 203 Query: 188 IGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLF 247 R PES W+ +++ ++ F +F + H + Sbjct: 204 WIRKSAPESQEWI-----------------------EDKYKDKSTFLSVFRKPHLSISMI 240 Query: 248 VAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFM---LGCIPPMLWLN 304 V + F ++ I GLL + N + VVIS LG + ++ Sbjct: 241 VFLV-------CFCLFGANWPINGLLPSYLADN-GVNTVVISTLMTIAGLGTLTGTIFFG 292 Query: 305 TAG-----RRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYP 359 G ++ ++G + L L I L+ + F + G L + Sbjct: 293 FVGDKIGVKKAFVVGLITSF-IFLCPLFFISVKNSSLIGLCLFGLMFTNLGIAGLVPKFI 351 Query: 360 NELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVA 419 + FPT +R G+I +L G + + L +I+ Y G G+SLF +++VA Sbjct: 352 YDYFPTKLRGLGTGLIYNLGATGGMAAP-VLATYISGY-------YGLGVSLF--IVTVA 401 Query: 420 FA 421 F+ Sbjct: 402 FS 403 >b2587 alpha-ketoglutarate permease (kgtP) {Escherichia coli K12-MG1655} Length = 432 Score = 58.5 bits (140), Expect = 8e-010 Identities = 99/399 (24%), Positives = 163/399 (40%), Gaps = 81/399 (20%) Query: 68 VGTSLFGYISDKVGRRKMFLIDI--IAIGVISVA------TMFVSSPVELLVMRVLIGIV 119 +G LFG I+DK GR+K L+ + + G + +A T+ +P LL+ R+ G+ Sbjct: 78 IGGWLFGRIADKHGRKKSMLLSVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137 Query: 120 IGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDV-------EGGW 172 +G +Y + + ++E + ++ F SF G A LV L E GW Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGW 197 Query: 173 RWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTR 232 R A+ ++ L WL R+ DE Q+TR Sbjct: 198 RIPFALGAVLAVVAL-----------WLRRQ-------------------LDETSQQETR 227 Query: 233 -------FRDLF-NRRHFPFVL-FVAAIWTCQVIPMFAIYTFGPQIVGLL--GLGVGKNA 281 + L+ NRR F VL F AA C YTF + L G+ N Sbjct: 228 ALKEAGSLKGLWRNRRAFIMVLGFTAAGSLC-------FYTFTTYMQKYLVNTAGMHANV 280 Query: 282 ALGNVVISLF-FMLGCIPPMLWL--NTAGRRP--LLIGSFAMMTLALAVLGLI-----PD 331 A G + +LF FML I P++ + GRR L GS A + + +L + P Sbjct: 281 ASGIMTAALFVFML--IQPLIGALSDKIGRRTSMLCFGSLAAI-FTVPILSALQNVSSPY 337 Query: 332 MGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALP 391 LV+ A + +F++ G L+ E+FP +RA VG+ +++ S + Sbjct: 338 AAFGLVMCALLIVSFYTSISGILK----AEMFPAQVRALGVGLSYAVANAIFGGSAEYVA 393 Query: 392 IFINNYGISNTMLMGAGI-SLFGLLISVAFAPETRGMSL 429 + + + G+ + ++ L+S+ + +GM L Sbjct: 394 LSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL 432 >b0353 putative transport protein (mhpT) {Escherichia coli K12-MG1655} Length = 418 Score = 58.5 bits (140), Expect = 8e-010 Identities = 79/368 (21%), Positives = 139/368 (37%), Gaps = 52/368 (14%) Query: 29 LDGYILVMIGVALEQLTPALKLDADWIXXXXXXXXXXXFVGTSLFGYISDKVGRRKMFLI 88 ++G L G+A + A LD + G + G ++D+ GR+++ + Sbjct: 41 MEGLDLQAAGIAAGGIAQAFALDKMQMGWIFSAGILGLLPGALVGGMLADRYGRKRILIG 100 Query: 89 DIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIA 148 + G+ S+AT L+ R++ G+ +GA P ++ +E + R R ++S + Sbjct: 101 SVALFGLFSLATAIAWDFPSLVFARLMTGVGLGAALPNLIALTSEAAGPRFRGTAVSLMY 160 Query: 149 AMWYVGATCADLVGYWLYDVEGGWR---WMLGSAAIPCLLILIGRFELPESPRWLLRKGR 205 +GA A +G+ W+ W+ G +P +L+ P RWL Sbjct: 161 CGVPIGAALAATLGF--AGANLAWQTVFWVGG--VVPLILV-------PLLMRWL----- 204 Query: 206 VKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTF 265 E F E+ R LF L +W C + +Y Sbjct: 205 ------------PESAVFAGEKQSAPPLRALFAPETATATLL---LWLCYFFTLLVVYML 249 Query: 266 GPQIVGLL-------GLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIG--SF 316 + LL G AL S MLG + L RP+ + + Sbjct: 250 INWLPLLLVEQGFQPSQAAGVMFALQMGAASGTLMLGALMDKL-------RPVTMSLLIY 302 Query: 317 AMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIM 376 + M +L LG + +++ F F +GG L L P + + IRA+ VG + Sbjct: 303 SGMLASLLALGTVSSFN-GMLLAGFVAGLFATGGQSVLYALAP-LFYSSQIRATGVGTAV 360 Query: 377 SLSRIGTI 384 ++ R+G + Sbjct: 361 AVGRLGAM 368 >b3523 putative transport protein (yhjE) {Escherichia coli K12-MG1655} Length = 440 Score = 57.8 bits (138), Expect = 1e-009 Identities = 94/384 (24%), Positives = 167/384 (43%), Gaps = 44/384 (11%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISV--------ATMFVSSPVELLVMRVLIGIV 119 +G+++FG+ D+VGR+ + ++ +G+ +V AT+ + +P+ L + R G+ Sbjct: 79 IGSAVFGHFGDRVGRKATLVASLLTMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLG 138 Query: 120 IGADYPIATSMITEFSSTRQRAFSISFI---AAMWYVGATCADLVGYWLYDVE----GGW 172 +G ++ A + TE + R+RA SF A + + A L+ WL E GW Sbjct: 139 LGGEWGGAALLATENAPPRKRALYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGW 198 Query: 173 RWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTR 232 R +A+ ++ L R L ESP + K+ + + L + V Sbjct: 199 RVPFIFSAVLVIIGLYVRVSLHESPVFEKVAKAKKQVKIPLGTLLTKHV----------- 247 Query: 233 FRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFF 292 R + A +T I TF +GLG+ +N L +++++ Sbjct: 248 ------RVTVLGTFIMLATYTLFYIMTVYSMTFS-TAAAPVGLGLPRNEVLWMLMMAV-I 299 Query: 293 MLGCIPPM--LWLNTAGRR-PLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSG 349 G + P+ L + GRR ++I + ++ AL + G ++V AF + Sbjct: 300 GFGVMVPVAGLLADAFGRRKSMVIITTLIILFALFAFNPLLGSGNPILVFAFLLLGLSLM 359 Query: 350 GP--GNLQWLYPNELFPTDIRASAVGVIMSLSRI-GTIVSTWALPIFINNYGISNTMLMG 406 G G + L P ELFPT++R + +++ I G V+ + NYG+ L Sbjct: 360 GLTFGPMGALLP-ELFPTEVRYTGASFSYNVASILGASVAPYIAAWLQTNYGLGAVGLYL 418 Query: 407 AGISLFGL-LISVAFAPETRGMSL 429 A ++ GL LI++ ETR SL Sbjct: 419 AAMA--GLTLIALLLTHETRHQSL 440 >b3691 D-galactonate transport (dgoT) {Escherichia coli K12-MG1655} Length = 445 Score = 55.5 bits (132), Expect = 7e-009 Identities = 77/356 (21%), Positives = 142/356 (39%), Gaps = 24/356 (6%) Query: 74 GYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITE 133 G+ D+VG R + I I V ++ F + + L+ +R + GI +P M+T Sbjct: 87 GWFLDRVGSRVTYFIAIFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTS 146 Query: 134 FSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWM-LGSAAIPCLLILIGRFE 192 + +RA ++ F + +VG + W+ ++ W W+ + + I + LI F+ Sbjct: 147 WFPEHERASAVGFYTSGQFVGLAFLTPLLIWIQEML-SWHWVFIVTGGIGIIWSLIW-FK 204 Query: 193 LPESPRWLLRKGRVKECEEMMIKLFG------EPVAFDEEQPQQTR-FRDLFNRRHFPFV 245 + + PR L KG + + E I+ G PV + QP + ++ +F+R+ Sbjct: 205 VYQPPR--LTKG-ISKAELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVY 261 Query: 246 L--FVAAIWTCQVIPMFAIYTFGPQIVGLLGLG----VGKNAALGNVVISLFFMLGCIPP 299 L F A + F Y + + L G V AA V++S + + Sbjct: 262 LGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRK 321 Query: 300 MLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYP 359 L A + P++ G + A P +++M AFF G ++ W Sbjct: 322 GFSLGFARKTPIICGLLISTCIMGANYTNDP-----MMIMCLMALAFFGNGFASITWSLV 376 Query: 360 NELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLL 415 + L P + GV +G I + YG + ++ + ++L G L Sbjct: 377 SSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGAL 432 >b1543 putative transport protein {Escherichia coli K12-MG1655} Length = 427 Score = 55.1 bits (131), Expect = 9e-009 Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 15/145 (10%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISV--------ATMFVSSPVELLVMRVLIGIV 119 VG +FG + D++GR+K+ I I +G+ + A + V +P+ L+ +R++ G+ Sbjct: 44 VGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLG 103 Query: 120 IGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDV-------EGGW 172 GA+ A +M+ E++ +R SF+A G A + +++ + GW Sbjct: 104 AGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGW 163 Query: 173 RWMLGSAAIPCLLILIGRFELPESP 197 R ++ + + + R L ESP Sbjct: 164 RIPFLASVVVMVFAIWLRMNLKESP 188 >b3224 sialic acid transporter (nanT) {Escherichia coli K12-MG1655} Length = 506 Score = 54.3 bits (129), Expect = 2e-008 Identities = 40/174 (22%), Positives = 73/174 (41%), Gaps = 1/174 (0%) Query: 26 GPFLDGYILVMIGVALEQLTPALKLDADWIXXXXXXXXXXXFVGTSLFGYISDKVGRRKM 85 G LDG+ V+I + L ++ L + G + G + D+ GRR Sbjct: 38 GYLLDGFDFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLA 97 Query: 86 FLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSIS 145 + I+ ++A F + + + R++IG+ + +Y + + + E R + Sbjct: 98 MVTSIVLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASG 157 Query: 146 FIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRW 199 F+ + + VGA A V Y L GWR + +P + L R +PE+ W Sbjct: 158 FLISGFSVGAVVAAQV-YSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDW 210 >b2686 multidrug resistance; probably membrane translocase (emrB) {Escherichia coli K12-MG1655} Length = 512 Score = 47.0 bits (110), Expect = 3e-006 Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 29/273 (10%) Query: 68 VGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIA 127 + L G+++ +VG K+FL IA + S A SS L+ RV+ GIV G P++ Sbjct: 64 ISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSLNMLIFFRVIQGIVAGPLIPLS 123 Query: 128 TSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYD-VEGGWRWMLGSAAIPCLLI 186 S++ +R+ +++ + V C ++G ++ D GW + + + I ++ Sbjct: 124 QSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISDNYHWGWIFFI-NVPIGVAVV 182 Query: 187 LIGRFELPESPRWLLRKGRVKECEEMMIKLFGEP---VAFDEEQPQQTRFRDL--FNRRH 241 L+ L +GR E I G + Q R ++L F+ + Sbjct: 183 LMTLQTL---------RGRETRTERRRIDAVGLALLVIGIGSLQIMLDRGKELDWFSSQE 233 Query: 242 FPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFML--GCIP- 298 + VA + C +I ++ + P + L L +N +G + ISL +ML G I Sbjct: 234 IIILTVVAVVAICFLI-VWELTDDNPIVD--LSLFKSRNFTIGCLCISLAYMLYFGAIVL 290 Query: 299 -PMLWLNTAGRRPLLIGSFAMMTLALAVLGLIP 330 P L G G LA A +G+IP Sbjct: 291 LPQLLQEVYGYTATWAG------LASAPVGIIP 317 Query= Z0052 putative NAD(P)H oxidoreductase (yabF) {Escherichia coli O157:H7 EDL933} (176 letters) Score E Sequences producing significant alignments: (bits) Value b0046 putative NAD(P)H oxidoreductase (yabF) {Escherichia coli K... 382 e-108 b3351 putative NAD(P)H oxidoreductase (yheR) {Escherichia coli K... 116 7e-028 b0901 orf, hypothetical protein (ycaK) {Escherichia coli K12-MG1... 51 5e-008 >b0046 putative NAD(P)H oxidoreductase (yabF) {Escherichia coli K12-MG1655} Length = 176 Score = 382 bits (981), Expect = e-108 Identities = 175/176 (99%), Positives = 175/176 (99%) Query: 1 MILIIYAHPYPHHSHANKRMFEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIV 60 MILIIYAHPYPHHSHANKRM EQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIV Sbjct: 1 MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIV 60 Query: 61 WQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPG 120 WQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPG Sbjct: 61 WQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPG 120 Query: 121 FDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG 176 FDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG Sbjct: 121 FDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG 176 >b3351 putative NAD(P)H oxidoreductase (yheR) {Escherichia coli K12-MG1655} Length = 184 Score = 116 bits (291), Expect = 7e-028 Identities = 66/165 (40%), Positives = 91/165 (55%), Gaps = 4/165 (2%) Query: 2 ILIIYAHPYPHHSHANKRMFEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVW 61 +L++YAHP S AN+ + + A L V + LY YPDF IDI EQ L ++IV+ Sbjct: 8 VLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHYPDFFIDIPREQALLREHEVIVF 67 Query: 62 QHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGA---H 118 QHP+ YS P LLK W+D+V S G+A G GG L GK+ +TTG ES + A + Sbjct: 68 QHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAGKYWRSVITTGEPESAYRYDALNRY 127 Query: 119 PGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHY 163 P DVL +P + A C ++WL P ++ + L AR Y Sbjct: 128 PMSDVL-RPFELAAGMCRMHWLSPIIIYWARRQSAQELASHARAY 171 >b0901 orf, hypothetical protein (ycaK) {Escherichia coli K12-MG1655} Length = 196 Score = 50.8 bits (120), Expect = 5e-008 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 57 DLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIG 116 D +V P+ WYS P +LK +ID+V+++G AYG G K A+ G ES ++G Sbjct: 81 DTLVVVFPLWWYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMG 140 Query: 117 AHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARH--YKQRLL 168 +S L+ Y G+ TF+C+ +G+ H Y Q LL Sbjct: 141 WEKN---ISDYLKNMCSYLGIE-----DADVTFLCNTVVFDGEELHASYYQSLL 186 Query= Z0053 K+ efflux antiporter, glutathione-regulated (kefC) {Escherichia coli O157:H7 EDL933} (620 letters) Score E Sequences producing significant alignments: (bits) Value b0047 K+ efflux antiporter, glutathione-regulated (kefC) {Escher... 1009 0.0 b3350 K+ efflux; NEM-activable K+/H+ antiporter (kefB) {Escheric... 407 e-115 b0478 putative transport protein (ybaL) {Escherichia coli K12-MG... 144 2e-035 >b0047 K+ efflux antiporter, glutathione-regulated (kefC) {Escherichia coli K12-MG1655} Length = 620 Score = 1009 bits (2609), Expect = 0.0 Identities = 539/620 (86%), Positives = 541/620 (87%) Query: 1 MDSHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE 60 MDSHTL+QALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE Sbjct: 1 MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAE 60 Query: 61 IGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICXXXXXXXXXXXXXRWQVAELIGM 120 IGVVLMLFIIGLELDPQRLWKLRAAVFG GALQMVIC RWQVAELIGM Sbjct: 61 IGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGM 120 Query: 121 TLALSSTAIAMQAMNERNLMVTXMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGA 180 TLALSSTAIAMQAMNERNLMVT MGRSAFAVLLFQDIAAIPLVAMIPLLA SSASTTMGA Sbjct: 121 TLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGA 180 Query: 181 FXXXXXXXXXXXXXXXXXGRYVTRPALRFVARSGLREVFSXXXXXXXXXXXXXXXXXXXS 240 F GRYVTRPALRFVARSGLREVFS S Sbjct: 181 FALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLS 240 Query: 241 MAMGAFLAGVLLASSEYRHALESDIEPXXXXXXXXXXXXXXMSIDFGTLIENPLRIVILL 300 MAMGAFLAGVLLASSEYRHALESDIEP MSIDFGTL+ENPLRIVILL Sbjct: 241 MAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILL 300 Query: 301 LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSL 360 LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSL Sbjct: 301 LGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSL 360 Query: 361 TLAVALSMAATPILLVILNRLEQSSTXXXXXXXXXXXXQPRVIIAGFGRFGQITGRLLLS 420 TLAVALSMAATPILLVILNRLEQSST QPRVIIAGFGRFGQITGRLLLS Sbjct: 361 TLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLS 420 Query: 421 SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL 480 SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL Sbjct: 421 SGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQL 480 Query: 481 TEMVKEHFPHLQIIARARDVDHYICLRQAGVEKPERETFEGALKTGRLALESLGLGPYEA 540 TEMVKEHFPHLQIIARARDVDHYI LRQAGVEKPERETFEGALKTGRLALESLGLGPYEA Sbjct: 481 TEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEA 540 Query: 541 RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG 600 RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG Sbjct: 541 RERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQG 600 Query: 601 TEEGKHTGNMADEPETKPSS 620 TEEGKHTGNMADEPETKPSS Sbjct: 601 TEEGKHTGNMADEPETKPSS 620 >b3350 K+ efflux; NEM-activable K+/H+ antiporter (kefB) {Escherichia coli K12-MG1655} Length = 601 Score = 407 bits (1047), Expect = e-115 Identities = 234/607 (38%), Positives = 352/607 (57%), Gaps = 16/607 (2%) Query: 3 SHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIG 62 S L+ +++L +A VP+A RLG+G+VLGYL+AG IGPWGL ++D + ILHF+E+G Sbjct: 4 SDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELG 63 Query: 63 VVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICXXXXXXXXXXXXXRWQVAELIGMTL 122 VV ++FIIGLEL+P +LW+LR ++FG GA Q+++ WQ A + G+ L Sbjct: 64 VVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALLAGLLMLTDFAWQAAVVGGIGL 123 Query: 123 ALSSTAIAMQAMNERNLMVTXMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFX 182 A+SSTA+A+Q M E+ + + G+ F+VLLFQD+A IP +A++PLLA S+ Sbjct: 124 AMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALALVPLLAGSADE---HFDW 180 Query: 183 XXXXXXXXXXXXXXXXGRYVTRPALRFVARSGLREVFSXXXXXXXXXXXXXXXXXXXSMA 242 GRY+ RP RF+A SG+REVF+ SMA Sbjct: 181 MKVGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFTAATLLLVLGSALFMDALGLSMA 240 Query: 243 MGAFLAGVLLASSEYRHALESDIEPXXXXXXXXXXXXXXMSIDFGTLIENPLRIVILLLG 302 +G F+AGVLLA SEYRH LE+ I+P MS++ G L + L +VI ++ Sbjct: 241 LGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFISVGMSLNLGVLYTHLLWVVISVVV 300 Query: 303 FLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTL 362 + +KI +L+L+AR V + +R FA +L QG EFAFV+F A + + + L + Sbjct: 301 LVAVKILVLYLLARLYGVRSSERMQFAGVLSQGGEFAFVLFSTASSQRLFQGDQMALLLV 360 Query: 363 AVALSMAATPILLVILNR---LEQSSTXXXXXXXXXXXXQPRVIIAGFGRFGQITGRLLL 419 V LSM TP+L+ ++++ + + +P+VI+ GFGRFGQ+ GRLL+ Sbjct: 361 TVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDEKPWVNDDKPQVIVVGFGRFGQVIGRLLM 420 Query: 420 SSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ 479 ++ +++ VL+ D + +RK+G KV+YGDAT++DLL SAGA AE ++ ++P+ ++ Sbjct: 421 ANKMRITVLERDISAVNLMRKYGYKVYYGDATQVDLLRSAGAEAAESIVITCNEPEDTMK 480 Query: 480 LTEMVKEHFPHLQIIARARDVDHYICLRQAGVEKPERETFEGALKTGRLALESLGLGPYE 539 L E+ ++HFPHL I+ARAR L QAGV + RETF AL+ GR L +LG+ P++ Sbjct: 481 LVEICQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVTLGMHPHQ 540 Query: 540 ARERADVFRRFNIQMVEEMAMVENDT----KARAAVYKRTSAMLSEIITEDREHLSLIQR 595 A+ FRR +++M+ E+ + DT +AR A + E+ E R Q Sbjct: 541 AQRAQLHFRRLDMRMLRELIPMHADTVQISRAREARRELEEIFQREMQQERR------QL 594 Query: 596 HGWQGTE 602 GW E Sbjct: 595 DGWDEFE 601 >b0478 putative transport protein (ybaL) {Escherichia coli K12-MG1655} Length = 558 Score = 144 bits (363), Expect = 2e-035 Identities = 128/550 (23%), Positives = 230/550 (41%), Gaps = 25/550 (4%) Query: 5 TLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVV 64 T+V L+ A ++ +A +L + ++GYL+AG + GP+ V D + AE+GV+ Sbjct: 10 TIVGGLVL---AFILGMLANKLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVI 66 Query: 65 LMLFIIGLELDPQRLWKLRAAVFGGGALQMVICXXXXXXXXXXXXXRWQVAELIGMTLAL 124 L++F +GL + L ++A G Q+ + + G+ L+ Sbjct: 67 LLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLST 126 Query: 125 SSTAIAMQAMNERNLMVTXMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGA---- 180 +ST + ++A+ ER L+ + G+ A L+ +D+ + + ++P +A +G Sbjct: 127 ASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLA 186 Query: 181 --FXXXXXXXXXXXXXXXXXGRYVTRPALRFVARSGLREVFSXXXXXXXXXXXXXXXXXX 238 GR + + A +G RE+F+ Sbjct: 187 VDMGITIGKVIAFIAIMMLVGRRLVPWIMARSAATGSRELFTLSVLALALGVAFGAVELF 246 Query: 239 X-SMAMGAFLAGVLLASSEYRHALESDIEPXXXXXXXXXXXXXXMSIDFGTLIENPLRIV 297 S A+GAF AG++L SE H D P M D LI+ PL ++ Sbjct: 247 DVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPLILIQQPLAVL 306 Query: 298 ILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWA 357 L L K + + R + A L Q EFAF++ G N+L P+ Sbjct: 307 ATLAIILFGKSLAAFFLVRLFGHSQRTALTIAASLAQIGEFAFILAGLGMALNLL-PQAG 365 Query: 358 KSLTLAVA-LSMAATPILLVILNR-LEQSSTXXXXXXXXXXXXQPRV--------IIAGF 407 ++L LA A LS+ P+L +L + L ++ T + ++ ++ G+ Sbjct: 366 QNLVLAGAILSIMLNPVLFALLEKYLAKTETLEEQTLEEAIEEEKQIPVDICNHALLVGY 425 Query: 408 GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVL 467 GR G + G LL+S + +VV++ ++ LR+ G++ G+A ++++ A A+ L Sbjct: 426 GRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWL 485 Query: 468 INAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYICLRQAGVEKPERETFEGALKTGR 527 I I + ++ + P ++IIARA D + + G + G + R Sbjct: 486 ILTIPNGYEAGEIVASARAKNPDIEIIARAHYDDEVAYITERGA----NQVVMGEREIAR 541 Query: 528 LALESLGLGP 537 LE L P Sbjct: 542 TMLELLETPP 551 Query= Z0055 dihydrofolate reductase type I trimethoprim resistance {Escherichia coli O157:H7 EDL933} (159 letters) Score E Sequences producing significant alignments: (bits) Value b0048 dihydrofolate reductase type I; trimethoprim resistance (f... 328 1e-091 >b0048 dihydrofolate reductase type I; trimethoprim resistance (folA) [1.5.1.3] {Escherichia coli K12-MG1655} Length = 159 Score = 328 bits (841), Expect = 1e-091 Identities = 158/159 (99%), Positives = 158/159 (99%) Query: 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTRESIGRPLPGRKNI 60 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHT ESIGRPLPGRKNI Sbjct: 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNI 60 Query: 61 ILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE 120 ILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE Sbjct: 61 ILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVE 120 Query: 121 GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR 159 GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR Sbjct: 121 GDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR 159 Query= Z0056 putative antitoxin of gyrase inhibiting toxin-antitoxin system {Escherichia coli O157:H7 EDL933} (77 letters) ***** No hits found ****** Query= Z0057 putative toxin of gyrase inhibiting toxin-antitoxin system {Escherichia coli O157:H7 EDL933} (104 letters) ***** No hits found ****** Query= Z0058 diadenosine tetraphosphatase (apaH) {Escherichia coli O157:H7 EDL933} (282 letters) Score E Sequences producing significant alignments: (bits) Value b0049 diadenosine tetraphosphatase (apaH) [3.6.1.41] {Escherichi... 581 e-167 b2734 protein phosphatase 2 (pphB) {Escherichia coli K12-MG1655} 51 1e-007 b1838 protein phosphatase 1 modulates phosphoproteins, signals p... 46 3e-006 >b0049 diadenosine tetraphosphatase (apaH) [3.6.1.41] {Escherichia coli K12-MG1655} Length = 280 Score = 581 bits (1497), Expect = e-167 Identities = 276/279 (98%), Positives = 277/279 (99%) Query: 1 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR 60 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR Sbjct: 1 MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVR 60 Query: 61 LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH 120 LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH Sbjct: 61 LVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAH 120 Query: 121 AGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAF 180 AGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAF Sbjct: 121 AGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAF 180 Query: 181 TRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGI 240 TRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGI Sbjct: 181 TRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGI 240 Query: 241 YALDTGCCWGGSLTCLRWEDKQYFVQPSNRHKDLGEGEA 279 YALDTGCCWGG+LTCLRWEDKQYFVQPSNRHKDLGE A Sbjct: 241 YALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAA 279 >b2734 protein phosphatase 2 (pphB) {Escherichia coli K12-MG1655} Length = 218 Score = 50.8 bits (120), Expect = 1e-007 Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 4 YLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVL 63 +++GD+HG Y L + LH++ F P D L GD + RGP SLDVLR + V Sbjct: 18 WVVGDIHGEYQLLQSRLHQLSFFPKIDLLISVGDNIDRGPESLDVLRLLNQ--PWFTSVK 75 Query: 64 GNHDLHLLAVF 74 GNH+ L F Sbjct: 76 GNHEAMALEAF 86 >b1838 protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (pphA) {Escherichia coli K12-MG1655} Length = 219 Score = 45.8 bits (107), Expect = 3e-006 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query: 4 YLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVL 63 +L GD+HGC ++L L F P +D L GD++ RGP SL L+ ++ V V Sbjct: 21 WLSGDIHGCLEQLRRKLWHCRFDPWRDLLISVGDVIDRGPQSLRCLQLLEQ--HWVCAVR 78 Query: 64 GNHD 67 GNH+ Sbjct: 79 GNHE 82 Query= Z0059 orf, hypothetical protein (apaG) {Escherichia coli O157:H7 EDL933} (125 letters) Score E Sequences producing significant alignments: (bits) Value b0050 orf, hypothetical protein (apaG) {Escherichia coli K12-MG1... 230 2e-062 >b0050 orf, hypothetical protein (apaG) {Escherichia coli K12-MG1655} Length = 125 Score = 230 bits (587), Expect = 2e-062 Identities = 114/125 (91%), Positives = 114/125 (91%) Query: 1 MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRET 60 MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRET Sbjct: 1 MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRET 60 Query: 61 XXXXXXXXXXXPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAV 120 PLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAV Sbjct: 61 EVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAV 120 Query: 121 PTLIH 125 PTLIH Sbjct: 121 PTLIH 125 Query= Z0060 S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase (ksgA) {Escherichia coli O157:H7 EDL933} (273 letters) Score E Sequences producing significant alignments: (bits) Value b0051 S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransfe... 544 e-156 >b0051 S-adenosylmethionine-6-N,N-adenosyl (rRNA) dimethyltransferase (ksgA) [2.1.1.-] {Escherichia coli K12-MG1655} Length = 273 Score = 544 bits (1401), Expect = e-156 Identities = 272/273 (99%), Positives = 272/273 (99%) Query: 1 MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD 60 MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD Sbjct: 1 MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD 60 Query: 61 QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST 120 QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST Sbjct: 61 QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNIST 120 Query: 121 PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA 180 PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA Sbjct: 121 PLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSA 180 Query: 181 FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG 240 FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG Sbjct: 181 FTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTG 240 Query: 241 MGIDPAMRAENISVAQYCQMANYLAENAPFQES 273 MGIDPAMRAENISVAQYCQMANYLAENAP QES Sbjct: 241 MGIDPAMRAENISVAQYCQMANYLAENAPLQES 273 Query= Z0061 pyridoxine biosynthesis (pdxA) {Escherichia coli O157:H7 EDL933} (329 letters) Score E Sequences producing significant alignments: (bits) Value b0052 pyridoxine biosynthesis (pdxA) {Escherichia coli K12-MG1655} 627 0.0 >b0052 pyridoxine biosynthesis (pdxA) {Escherichia coli K12-MG1655} Length = 329 Score = 627 bits (1617), Expect = 0.0 Identities = 315/329 (95%), Positives = 319/329 (96%) Query: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYS 60 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT+RAAMLGLPLTLRPYS Sbjct: 1 MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTNRAAMLGLPLTLRPYS 60 Query: 61 PNSPAQPQXXXXXXXXPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGP 120 PNSPAQPQ PVALR VTAGQLA+ENGHYVVETLARACDGCLNGEFAALITGP Sbjct: 61 PNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGP 120 Query: 121 VHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPAL 180 VHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPAL Sbjct: 121 VHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPAL 180 Query: 181 LHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKL 240 LHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVL+ELRAQGMKL Sbjct: 181 LHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLNELRAQGMKL 240 Query: 241 NGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA 300 NGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA Sbjct: 241 NGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTA 300 Query: 301 LELAGRGEADVGSFITALNLAIKMIVNTQ 329 LELAGRG+ADVGSFITALNLAIKMIVNTQ Sbjct: 301 LELAGRGKADVGSFITALNLAIKMIVNTQ 329 Query= Z0062 survival protein (surA) {Escherichia coli O157:H7 EDL933} (428 letters) Score E Sequences producing significant alignments: (bits) Value b0053 survival protein (surA) {Escherichia coli K12-MG1655} 834 0.0 b0441 putative protease maturation protein (ybaU) {Escherichia c... 70 2e-013 b3775 peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) ... 50 4e-007 >b0053 survival protein (surA) {Escherichia coli K12-MG1655} Length = 428 Score = 834 bits (2155), Expect = 0.0 Identities = 428/428 (100%), Positives = 428/428 (100%) Query: 1 MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL 60 MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL Sbjct: 1 MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQL 60 Query: 61 PDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAY 120 PDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAY Sbjct: 61 PDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAY 120 Query: 121 DGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHIL 180 DGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHIL Sbjct: 121 DGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHIL 180 Query: 181 IPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP 240 IPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP Sbjct: 181 IPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELP 240 Query: 241 GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTD 300 GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTD Sbjct: 241 GIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTD 300 Query: 301 EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL Sbjct: 301 EQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRL 360 Query: 361 NKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRAS 420 NKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRAS Sbjct: 361 NKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRAS 420 Query: 421 AYVKILSN 428 AYVKILSN Sbjct: 421 AYVKILSN 428 >b0441 putative protease maturation protein (ybaU) {Escherichia coli K12-MG1655} Length = 623 Score = 70.5 bits (171), Expect = 2e-013 Identities = 90/346 (26%), Positives = 141/346 (40%), Gaps = 72/346 (20%) Query: 65 TLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAI-ANIAKQNNMTLDQMRSR--LAYD 121 TLR Q++ RLI + ++ Q +++ + ISDEQ+ QAI A A Q + D R L Sbjct: 86 TLRQQVLNRLIDEALLDQYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQM 145 Query: 122 GLNYNTY----RNQIRKEMIISEVRNNE------------------VRRRITI------- 152 G+ + Y RNQ+ + +I+ V + V R TI Sbjct: 146 GMTADQYAQALRNQLTTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAA 205 Query: 153 ----LPQEVESLAQQVGNQNDASTELNLSHILIPLP--ENPTSDQ--------------- 191 QE+ S +Q N + +S+I + + P SD Sbjct: 206 KQPVTEQEIASYYEQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQ 265 Query: 192 ---------VNEAESQARAIVDQARNGADFGKLAIAHSAD-QQALNGGQMGWGRIQELPG 241 + E +A+A++D+ G DF LA SAD A NGG MGW +P Sbjct: 266 PQRTRYSIIQTKTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPD 325 Query: 242 IFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDE 301 A +KG + G I+S VGF I++++D++ +K S+ EV R + Sbjct: 326 ELKNA-GLKEKGQLSGVIKSSVGFLIVRLDDIQ-PAKVKSLDEV--RDDIAAKVKHEKAL 381 Query: 302 QARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPD 347 A L+Q +D S T A A++ + + GW + D Sbjct: 382 DAYYALQQKVSDAASNDTESLAGAEQ-----AAGVKATQTGWFSKD 422 >b3775 peptidyl-prolyl cis-trans isomerase C (rotamase C) (ppiC) [5.2.1.8] {Escherichia coli K12-MG1655} Length = 93 Score = 49.7 bits (117), Expect = 4e-007 Identities = 26/75 (34%), Positives = 41/75 (54%) Query: 196 ESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDI 255 E A +++Q +NGADFGKLA HS GG +G R ++ F + + + + Sbjct: 15 EKLALDLLEQIKNGADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEP 74 Query: 256 VGPIRSGVGFHILKV 270 GP+ + G+HI+KV Sbjct: 75 TGPLHTQFGYHIIKV 89 Query= Z0063 organic solvent tolerance (imp) {Escherichia coli O157:H7 EDL933} (784 letters) Score E Sequences producing significant alignments: (bits) Value b0054 organic solvent tolerance (imp) {Escherichia coli K12-MG1655} 1623 0.0 >b0054 organic solvent tolerance (imp) {Escherichia coli K12-MG1655} Length = 784 Score = 1623 bits (4204), Expect = 0.0 Identities = 782/784 (99%), Positives = 783/784 (99%) Query: 1 MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINANHAK 60 MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINA+HAK Sbjct: 1 MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAK 60 Query: 61 GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILK 120 GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILK Sbjct: 61 GDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILK 120 Query: 121 GPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTW 180 GPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTW Sbjct: 121 GPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTW 180 Query: 181 SVVGSEIIHDREEQVAEIWNARFKVGPVSIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNY 240 SVVGSEIIHDREEQVAEIWNARFKVGPV IFYSPYLQLPVGDKRRSGFLIPNAKYTTTNY Sbjct: 181 SVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNY 240 Query: 241 FEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYED 300 FEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYED Sbjct: 241 FEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYED 300 Query: 301 EHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFS 360 EHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFS Sbjct: 301 EHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFS 360 Query: 361 VGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNT 420 VGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNT Sbjct: 361 VGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNT 420 Query: 421 RDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNR 480 RDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNR Sbjct: 421 RDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNR 480 Query: 481 VMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGL 540 VMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGL Sbjct: 481 VMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGL 540 Query: 541 FRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWEND 600 FRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWEND Sbjct: 541 FRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWEND 600 Query: 601 DKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYAS 660 DKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYAS Sbjct: 601 DKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYAS 660 Query: 661 PEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQ 720 PEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQ Sbjct: 661 PEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQ 720 Query: 721 YSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPY 780 YSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPY Sbjct: 721 YSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPY 780 Query: 781 QNTL 784 QNTL Sbjct: 781 QNTL 784 Query= Z0064 putative DNA binding protein (yabH) {Escherichia coli O157:H7 EDL933} (271 letters) Score E Sequences producing significant alignments: (bits) Value b0055 putative DNA binding protein (yabH) {Escherichia coli K12-... 447 e-127 b1000 curved DNA-binding protein; functions closely related to D... 48 8e-007 >b0055 putative DNA binding protein (yabH) {Escherichia coli K12-MG1655} Length = 271 Score = 447 bits (1149), Expect = e-127 Identities = 231/271 (85%), Positives = 231/271 (85%) Query: 1 MQYWGKIIGVAVAXXXXXXXXXXXXXXXXXHMFDKARSRKMAWFANQRERQALFFATTFE 60 MQYWGKIIGVAVA HMFDKARSRKMAWFANQRERQALFFATTFE Sbjct: 1 MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFE 60 Query: 61 VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS 120 VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS Sbjct: 61 VMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRS 120 Query: 121 VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMXXXXX 180 VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMM Sbjct: 121 VCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQ 180 Query: 181 XXXXXXXXXXXXXXXXXXRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK 240 RGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK Sbjct: 181 FGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAK 240 Query: 241 GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK 271 GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK Sbjct: 241 GLPPEMMEMAKQKAQEIQQAYELIKQQKGFK 271 >b1000 curved DNA-binding protein; functions closely related to DnaJ (cbpA) {Escherichia coli K12-MG1655} Length = 306 Score = 47.8 bits (112), Expect = 8e-007 Identities = 26/66 (39%), Positives = 44/66 (66%), Gaps = 8/66 (12%) Query: 203 LEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYE 262 L+D ++GVKPTDD TIK AYR+L ++HPD V+K P+ A+ + +E+ +A+E Sbjct: 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSK--EPD----AEARFKEVAEAWE 54 Query: 263 LIKQQK 268 ++ ++ Sbjct: 55 VLSDEQ 60 Query= Z0065 orf Unknown function {Escherichia coli O157:H7 EDL933} (250 letters) Score E Sequences producing significant alignments: (bits) Value b0056 orf, hypothetical protein (yabP) {Escherichia coli K12-MG1... 355 2e-099 b0057 orf, hypothetical protein (yabQ) {Escherichia coli K12-MG1... 52 5e-008 >b0056 orf, hypothetical protein (yabP) {Escherichia coli K12-MG1655} Length = 216 Score = 355 bits (910), Expect = 2e-099 Identities = 168/192 (87%), Positives = 179/192 (93%) Query: 1 MKVSVPGMPATLLNMSNNDIYKMVSGDKMDMKMNIFQRLWETLRHLFWSDKQTEAYKLLF 60 MKVSVPGMP TLLNMS NDIYKMVSGDKMD+KMNIFQRLWETLRHLFWSDKQTEAYKLLF Sbjct: 1 MKVSVPGMPVTLLNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDKQTEAYKLLF 60 Query: 61 NFVNKKAGNINASKYFTGAVNENEKEKFIHSLELFNELKTCAKNPDEMVAKGNMSWVAQT 120 NFVN + GNINAS+YFTGA+NENE+EKFI+SLELFN+LKTCAKNPDE+VAKGNM WVAQT Sbjct: 61 NFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMRWVAQT 120 Query: 121 FGDIELSVTFFIENKEICTQTLQLHKGPGNLGVDLREAYLPGVDMRDCYLGLKTMKGHNK 180 FGDIELSVTFFIE +ICTQTLQLHKG GNLGVDLR+AYLPGVDMRDCYLG KTMKG N Sbjct: 121 FGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGVDMRDCYLGKKTMKGSND 180 Query: 181 VLYLEPGWNANL 192 +LY PGWNANL Sbjct: 181 ILYERPGWNANL 192 >b0057 orf, hypothetical protein (yabQ) {Escherichia coli K12-MG1655} Length = 52 Score = 51.6 bits (122), Expect = 5e-008 Identities = 24/43 (55%), Positives = 34/43 (79%) Query: 207 VDGATHLYDEVIIINKITPKKIDTEEVATKQSTAEQITDNAII 249 ++GAT LYDEVIIINKI PKKIDT+ VAT++ +++ N ++ Sbjct: 1 MNGATSLYDEVIIINKIPPKKIDTKGVATEEVATKKVLLNKLL 43 Query= Z0066 orf, hypothetical protein (yabO) {Escherichia coli O157:H7 EDL933} (219 letters) Score E Sequences producing significant alignments: (bits) Value b0058 orf, hypothetical protein (yabO) {Escherichia coli K12-MG1... 447 e-127 b1086 orf, hypothetical protein (yceC) {Escherichia coli K12-MG1... 115 2e-027 b2594 suppressor of ftsH mutation (sfhB) {Escherichia coli K12-M... 110 1e-025 b2791 orf, hypothetical protein (yqcB) {Escherichia coli K12-MG1... 101 5e-023 >b0058 orf, hypothetical protein (yabO) {Escherichia coli K12-MG1655} Length = 219 Score = 447 bits (1149), Expect = e-127 Identities = 217/219 (99%), Positives = 217/219 (99%) Query: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV Sbjct: 1 MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESV 60 Query: 61 HRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWP 120 HRLDMATSGVIVVALTKAAERELKRQFRER PKKQYV RVWGHPSPAEGLVDLPLICDWP Sbjct: 61 HRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWP 120 Query: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF Sbjct: 121 NRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRF 180 Query: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF Sbjct: 181 YASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF 219 >b1086 orf, hypothetical protein (yceC) {Escherichia coli K12-MG1655} Length = 319 Score = 115 bits (288), Expect = 2e-027 Identities = 84/215 (39%), Positives = 111/215 (51%), Gaps = 14/215 (6%) Query: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71 VILY+DDHI+V+NKPSG G V+ ++ P+A E VHRLD TSGV+ Sbjct: 94 VILYEDDHILVLNKPSGTAVHGG--SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151 Query: 72 VVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYE 130 +VA ++A R L Q RE+ +K Y+ V G V PL+ + ++ V + Sbjct: 152 LVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ 211 Query: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS------- 183 GKP++T ++V E A T V P+TGR+HQ+RVH GHPI D Y Sbjct: 212 EGKPSETRFKVEERYAFATL-VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL 270 Query: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 EA RL LHA L THP G M +AP D Sbjct: 271 TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 >b2594 suppressor of ftsH mutation (sfhB) {Escherichia coli K12-MG1655} Length = 326 Score = 110 bits (274), Expect = 1e-025 Identities = 78/225 (34%), Positives = 114/225 (50%), Gaps = 20/225 (8%) Query: 9 PQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ-----RDYPQAESVHRL 63 PQ+ L I+Y+D+ I+++NKP L+ PG + + D P+A VHRL Sbjct: 79 PQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRL 138 Query: 64 DMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRP 123 D T+G++VVA T A+ L + R ++Y GH + A G VD P I P + Sbjct: 139 DKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT-AGGTVDEP-ISRHPTKR 196 Query: 124 KQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS 183 + GKPA T Y ++E+ +T R+ L+ TGR+HQ+RVHM + HP++GD Y Sbjct: 197 THMAVHPMGKPAVTHYRIMEHFRVHT-RLRLRLETGRTHQIRVHMAHITHPLVGDPVYGG 255 Query: 184 ----PEARAMA--------PRLLLHAEMLTITHPAYGNSMTFKAP 216 P+ + A R LHA ML + HP G M + AP Sbjct: 256 RPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300 >b2791 orf, hypothetical protein (yqcB) {Escherichia coli K12-MG1655} Length = 260 Score = 101 bits (251), Expect = 5e-023 Identities = 77/226 (34%), Positives = 109/226 (48%), Gaps = 24/226 (10%) Query: 14 LVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDY--PQAESVHRLDMATSGVI 71 L ILYQD+ ++ VNKPSG L L+ + V+ + RD + HRLD TSGV+ Sbjct: 2 LEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVL 61 Query: 72 VVALTKAAERELKRQFRERVPKKQY--VTRVWGHPSPAEGLVDLPLICDWPNRPKQKVCY 129 ++ L+ A R L +QF + +K+Y + R W E ++D PL+ + + Sbjct: 62 LMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGW---LMEEAVLDYPLVEELDKIADKFARE 118 Query: 130 ETG-KPAQTEYEVV----------EYAADNTARVVLKPITGRSHQLRVHMLALGHPILGD 178 + G +PA T Y + Y V L+P TGR HQLR H+ L HPI+GD Sbjct: 119 DKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGD 178 Query: 179 ------RFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 R S RL+LHA L++THP G +T A D Sbjct: 179 SKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLTIHAGLD 224 Query= Z0067 putative enzyme Unknown function {Escherichia coli O157:H7 EDL933} (968 letters) Score E Sequences producing significant alignments: (bits) Value b0059 probable ATP-dependent RNA helicase (hepA) {Escherichia co... 1919 0.0 >b0059 probable ATP-dependent RNA helicase (hepA) {Escherichia coli K12-MG1655} Length = 968 Score = 1919 bits (4971), Expect = 0.0 Identities = 968/968 (100%), Positives = 968/968 (100%) Query: 1 MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT 60 MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT Sbjct: 1 MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT 60 Query: 61 ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI 120 ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI Sbjct: 61 ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI 120 Query: 121 DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180 DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG Sbjct: 121 DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG 180 Query: 181 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH 240 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH Sbjct: 181 LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH 240 Query: 241 DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE Sbjct: 241 DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 Query: 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL 360 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL Sbjct: 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL 360 Query: 361 AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN 420 AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN Sbjct: 361 AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN 420 Query: 421 TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD 480 TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD Sbjct: 421 TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD 480 Query: 481 NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI Sbjct: 481 NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 Query: 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 600 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI Sbjct: 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI 600 Query: 601 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT 660 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT Sbjct: 601 GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT 660 Query: 661 EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM 720 EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM Sbjct: 661 EGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM 720 Query: 721 NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE 780 NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE Sbjct: 721 NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE 780 Query: 781 HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP 840 HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP Sbjct: 781 HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP 840 Query: 841 VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR 900 VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR Sbjct: 841 VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR 900 Query: 901 ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL 960 ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL Sbjct: 901 ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL 960 Query: 961 RLIVVTHQ 968 RLIVVTHQ Sbjct: 961 RLIVVTHQ 968 Query= Z0068 DNA polymerase II (polB) {Escherichia coli O157:H7 EDL933} (783 letters) Score E Sequences producing significant alignments: (bits) Value b0060 DNA polymerase II (polB) [2.7.7.7] {Escherichia coli K12-M... 1600 0.0 >b0060 DNA polymerase II (polB) [2.7.7.7] {Escherichia coli K12-MG1655} Length = 783 Score = 1600 bits (4144), Expect = 0.0 Identities = 774/783 (98%), Positives = 778/783 (99%) Query: 1 MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILRGE 60 MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHIL+GE Sbjct: 1 MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGE 60 Query: 61 QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI 120 QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI Sbjct: 61 QGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFI 120 Query: 121 TSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM 180 TSPVWVEGDMHNG IVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM Sbjct: 121 TSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYM 180 Query: 181 LGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERY 240 LGPENGDAS+LDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERY Sbjct: 181 LGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERY 240 Query: 241 RIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL 300 R+PLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL Sbjct: 241 RLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL 300 Query: 301 LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG 360 LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG Sbjct: 301 LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG 360 Query: 361 LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY 420 LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY Sbjct: 361 LPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDY 420 Query: 421 KSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA 480 KSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA Sbjct: 421 KSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEA 480 Query: 481 KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIMRQTKALIEAQGYD 540 KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRL SSITMRGHQIMRQTKALIEAQGYD Sbjct: 481 KRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYD 540 Query: 541 VIYGDTDSTFVWLKGAHSEEEATKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCR 600 VIYGDTDSTFVWLKGAHSEEEA KIGRALVQHVN WWAETLQKQ+LTSALELEYETHFCR Sbjct: 541 VIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCR 600 Query: 601 FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE 660 FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE Sbjct: 601 FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE 660 Query: 661 PYQEYFRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL 720 PYQEY RETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL Sbjct: 661 PYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPL 720 Query: 721 QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL 780 QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL Sbjct: 721 QYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQL 780 Query: 781 GLF 783 GLF Sbjct: 781 GLF 783 Query= Z0069 L-ribulose-5-phosphate 4-epimerase (araD) {Escherichia coli O157:H7 EDL933} (231 letters) Score E Sequences producing significant alignments: (bits) Value b0061 L-ribulose-5-phosphate 4-epimerase (araD) [5.1.3.4] {Esche... 473 e-135 b3583 putative epimerase/aldolase (sgbE) {Escherichia coli K12-M... 366 e-103 b4198 putative epimerase/aldolase (sgaE) {Escherichia coli K12-M... 291 3e-080 b2800 L-fuculose-1-phosphate aldolase (fucA) [4.1.2.17] {Escheri... 57 8e-010 >b0061 L-ribulose-5-phosphate 4-epimerase (araD) [5.1.3.4] {Escherichia coli K12-MG1655} Length = 231 Score = 473 bits (1218), Expect = e-135 Identities = 229/231 (99%), Positives = 230/231 (99%) Query: 1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVS 60 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYS+MTADDMVVVS Sbjct: 1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVS 60 Query: 61 IETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD 120 IETGEVVEG KKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD Sbjct: 61 IETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD 120 Query: 121 YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA 180 YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA Sbjct: 121 YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA 180 Query: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ 231 EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ Sbjct: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ 231 >b3583 putative epimerase/aldolase (sgbE) {Escherichia coli K12-MG1655} Length = 231 Score = 366 bits (939), Expect = e-103 Identities = 175/231 (75%), Positives = 194/231 (83%) Query: 1 MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVS 60 MLE LK VL ANLALP H+LVT TWGNVSAVD R VIKPSGV+Y +MTADDMVVV Sbjct: 1 MLEQLKADVLAANLALPAHHLVTFTWGNVSAVDETRQWMVIKPSGVEYDVMTADDMVVVE 60 Query: 61 IETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHAD 120 I +G+VVEG+KKPSSDTPTH LY+ + IGGIVHTHSRHATIW+QAG +PA GTTHAD Sbjct: 61 IASGKVVEGSKKPSSDTPTHLALYRRYAEIGGIVHTHSRHATIWSQAGLDLPAWGTTHAD 120 Query: 121 YFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNA 180 YFYG IPCTR+MT EINGEYE++TG VI+ETFE++G AQ+P VLVHSHGPFAWGKNA Sbjct: 121 YFYGAIPCTRQMTAEEINGEYEYQTGEVIIETFEERGRSPAQIPAVLVHSHGPFAWGKNA 180 Query: 181 EDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ 231 DAVHNA+VLEE AYMG+F RQLAPQLP MQ LLDKHYLRKHGA AYYGQ Sbjct: 181 ADAVHNAVVLEECAYMGLFSRQLAPQLPAMQNELLDKHYLRKHGANAYYGQ 231 >b4198 putative epimerase/aldolase (sgaE) {Escherichia coli K12-MG1655} Length = 228 Score = 291 bits (744), Expect = 3e-080 Identities = 139/230 (60%), Positives = 174/230 (75%), Gaps = 3/230 (1%) Query: 2 LEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSI 61 ++ LK+QV EAN+ LP++ LVT TWGNVSA+DRERG+ VIKPSGV Y M A DMVVV + Sbjct: 1 MQKLKQQVFEANMELPRYGLVTFTWGNVSAIDRERGLVVIKPSGVAYETMKAADMVVVDM 60 Query: 62 ETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADY 121 +G+VVEG +PSSDT TH LY+ +PS+GGIVHTHS HAT WAQAG +IPA GTTHADY Sbjct: 61 -SGKVVEGEYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAWAQAGLAIPALGTTHADY 119 Query: 122 FYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAE 181 F+G IPCTR +++ E+ GEYE TG VI+ET + PG++V+ HGPFAWGK+A Sbjct: 120 FFGDIPCTRGLSEEEVQGEYELNTGKVIIETL--GNAEPLHTPGIVVYQHGPFAWGKDAH 177 Query: 182 DAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ 231 DAVHNA+V+EEVA M R + PQL + L++KH++RKHG AYYGQ Sbjct: 178 DAVHNAVVMEEVAKMAWIARGINPQLNHIDSFLMNKHFMRKHGPNAYYGQ 227 >b2800 L-fuculose-1-phosphate aldolase (fucA) [4.1.2.17] {Escherichia coli K12-MG1655} Length = 215 Score = 57.4 bits (137), Expect = 8e-010 Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 17/204 (8%) Query: 5 LKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETG 64 L RQ+++ L + + L T GNVS R + +I P+G+ Y +T +V + G Sbjct: 6 LARQIIDTCLEMTRLGLNQGTAGNVSV--RYQDGMLITPTGIPYEKLTESHIVFID-GNG 62 Query: 65 EVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYG 124 + EG K PSS+ H YQ+ P +VH H+ H T + +SIPA A Sbjct: 63 KHEEG-KLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRSIPAIHYMIAAAGGN 121 Query: 125 TIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAV 184 +IPC T E E + L+ HG A N E A+ Sbjct: 122 SIPCAPYATFG-------------TRELSEHVALALKNRKATLLQHHGLIACEVNLEKAL 168 Query: 185 HNAIVLEEVAYMGIFCRQLAPQLP 208 A +E +A + + + +P Sbjct: 169 WLAHEVEVLAQLYLTTLAITDPVP 192 Query= Z0070 L-arabinose isomerase (araA) {Escherichia coli O157:H7 EDL933} (500 letters) Score E Sequences producing significant alignments: (bits) Value b0062 L-arabinose isomerase (araA) [5.3.1.4] {Escherichia coli K... 1028 0.0 >b0062 L-arabinose isomerase (araA) [5.3.1.4] {Escherichia coli K12-MG1655} Length = 500 Score = 1028 bits (2657), Expect = 0.0 Identities = 498/500 (99%), Positives = 499/500 (99%) Query: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNTEAKLPCKLVLKPLGTTPDEI 60 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVV ALNTEAKLPCKLVLKPLGTTPDEI Sbjct: 1 MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEI 60 Query: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF Sbjct: 61 TAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDF 120 Query: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR Sbjct: 121 MNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCR 180 Query: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT Sbjct: 181 FGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMT 240 Query: 241 PATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 PATQIHG+KRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG Sbjct: 241 PATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQG 300 Query: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA Sbjct: 301 YGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAA 360 Query: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP Sbjct: 361 EEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLP 420 Query: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT Sbjct: 421 KLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDT 480 Query: 481 RLPAFKDALRWNEVYYGFRR 500 RLPAFKDALRWNEVYYGFRR Sbjct: 481 RLPAFKDALRWNEVYYGFRR 500 Query= Z0072 L-ribulokinase (araB) {Escherichia coli O157:H7 EDL933} (566 letters) Score E Sequences producing significant alignments: (bits) Value b0063 L-ribulokinase (araB) [2.7.1.16] {Escherichia coli K12-MG1... 1108 0.0 >b0063 L-ribulokinase (araB) [2.7.1.16] {Escherichia coli K12-MG1655} Length = 566 Score = 1108 bits (2865), Expect = 0.0 Identities = 545/566 (96%), Positives = 546/566 (96%) Query: 1 MAIAIGLDFGSDSVRALAVDCTTGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60 MAIAIGLDFGSDSVRALAVDC TGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES Sbjct: 1 MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES 60 Query: 61 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK Sbjct: 61 MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK 120 Query: 121 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL Sbjct: 121 DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL 180 Query: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT Sbjct: 181 CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT 240 Query: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI Sbjct: 241 DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI 300 Query: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH 360 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH Sbjct: 301 LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH 360 Query: 361 PELKEQIDASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420 PELK QI+ASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA Sbjct: 361 PELKTQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA 420 Query: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL Sbjct: 421 TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL 480 Query: 481 QIVASDQCCXXXXXXXXXXXXXXXXDIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQ 540 QIVASDQCC DIPSAQQKMASAVEKTLQP SEQAQRFEQLYRRYQ Sbjct: 481 QIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQ 540 Query: 541 QWAMSAEQHYLPTSAPAQAAQAVPTL 566 QWAMSAEQHYLPTSAPAQAAQAV TL Sbjct: 541 QWAMSAEQHYLPTSAPAQAAQAVATL 566 Query= Z0073 transcriptional regulator for ara operon (araC) {Escherichia coli O157:H7 EDL933} (292 letters) Score E Sequences producing significant alignments: (bits) Value b0064 transcriptional regulator for ara operon (araC) {Escherich... 584 e-168 b3954 putative ARAC-type regulatory protein (yijO) {Escherichia ... 57 1e-009 b2382 putative ARAC-type regulatory protein {Escherichia coli K1... 54 2e-008 b3906 positive regulator for rhaRS operon (rhaR) {Escherichia co... 53 3e-008 b3569 putative regulator of xyl operon (xylR) {Escherichia coli ... 50 2e-007 b3905 positive regulator for rhaBAD operon (rhaS) {Escherichia c... 45 4e-006 b0300 putative ARAC-type regulatory protein (ykgA) {Escherichia ... 44 1e-005 >b0064 transcriptional regulator for ara operon (araC) {Escherichia coli K12-MG1655} Length = 292 Score = 584 bits (1506), Expect = e-168 Identities = 280/292 (95%), Positives = 280/292 (95%) Query: 1 MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQ 60 MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQ Sbjct: 1 MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQ 60 Query: 61 GREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFF 120 GREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFF Sbjct: 61 GREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFF 120 Query: 121 RPDEAHQPHFSDLFGQIINAGQGEGRYSEXXXXXXXXXXXXRRMEAINESLHPPMDNRVR 180 RPDEAHQPHFSDLFGQIINAGQGEGRYSE RRMEAINESLHPPMDNRVR Sbjct: 121 RPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVR 180 Query: 181 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS 240 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS Sbjct: 181 EACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLS 240 Query: 241 TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS 292 TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS Sbjct: 241 TTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS 292 >b3954 putative ARAC-type regulatory protein (yijO) {Escherichia coli K12-MG1655} Length = 283 Score = 57.0 bits (136), Expect = 1e-009 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%) Query: 185 YISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRM 244 YI + A S SVAQ +SP+ LSHLF++ I + R+ AK LL + Sbjct: 177 YIDERYA-SALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDL 235 Query: 245 PIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277 + V GF D YF R+F+K T SPSE+R Sbjct: 236 KVKEVAHACGFVDSNYFCRLFRKNTERSPSEYR 268 >b2382 putative ARAC-type regulatory protein {Escherichia coli K12-MG1655} Length = 285 Score = 53.5 bits (127), Expect = 2e-008 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 173 PPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRI 232 P D C ++ D+ A SVAQ ++P+ LS LF Q + + + R+ Sbjct: 177 PRGDFLYHSICNWVQDNYAQP-LTRESVAQFFNITPNHLSKLFAQHGTMRFIEYVRWVRM 235 Query: 233 SQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA 278 ++A+++L + I V + GF D YF RVF++ G +P E+ A Sbjct: 236 AKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTPGEYSA 281 >b3906 positive regulator for rhaRS operon (rhaR) {Escherichia coli K12-MG1655} Length = 312 Score = 52.8 bits (125), Expect = 3e-008 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Query: 180 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLL 239 R A S D D AS ++ V L FRQQ G+++ + R+ A+ LL Sbjct: 214 RLAASLKSPFALDKFCDEASCSERV------LRQQFRQQTGMTINQYLRQVRVCHAQYLL 267 Query: 240 STTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277 +R+ I+ + GF+D YFS VF + TG +PS++R Sbjct: 268 QHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWR 305 >b3569 putative regulator of xyl operon (xylR) {Escherichia coli K12-MG1655} Length = 392 Score = 49.7 bits (117), Expect = 2e-007 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 176 DNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQA 235 D V +A YI +H A + V V +S S L F++++G ++ + +++ +A Sbjct: 284 DPAVIQAMHYIRNH-ACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMIHAEKLEKA 342 Query: 236 KLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFR 277 + LL +T + I + + G+ YF VFKK +P E+R Sbjct: 343 RSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYR 384 >b3905 positive regulator for rhaBAD operon (rhaS) {Escherichia coli K12-MG1655} Length = 278 Score = 45.4 bits (106), Expect = 4e-006 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 4/118 (3%) Query: 163 RMEAINESLHPPMDNRVREACQYISDHLADS-NFDIASVAQHVCLSPSRLSHLFRQQLGI 221 R ++ E+L +R+ ++ DH AD N+D +VA LS L +QQ G+ Sbjct: 158 RKSSLQENLENSA-SRLNLLLAWLEDHFADEVNWD--AVADQFSLSLRTLHRQLKQQTGL 214 Query: 222 SVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAG 279 + + R+ +A+ LL + + + GF D +FS +F++ SP + R G Sbjct: 215 TPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQG 272 >b0300 putative ARAC-type regulatory protein (ykgA) {Escherichia coli K12-MG1655} Length = 239 Score = 44.3 bits (103), Expect = 1e-005 Identities = 25/81 (30%), Positives = 41/81 (50%) Query: 197 IASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFD 256 I +AQ S + LFR + + + + +R+ +A +L+ T + + ++ FD Sbjct: 35 IEDIAQKSGYSRRNIQLLFRNFMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFD 94 Query: 257 DQLYFSRVFKKCTGASPSEFR 277 Q FSR FKK G SP E+R Sbjct: 95 SQQSFSREFKKLFGCSPREYR 115 Query= Z0074 orf, hypothetical protein (yabI) {Escherichia coli O157:H7 EDL933} (254 letters) Score E Sequences producing significant alignments: (bits) Value b0065 orf, hypothetical protein (yabI) {Escherichia coli K12-MG1... 521 e-149 b3095 orf, hypothetical protein (yqjA) {Escherichia coli K12-MG1... 66 2e-012 b2317 orf, hypothetical protein (dedA) {Escherichia coli K12-MG1... 62 4e-011 b3009 orf, hypothetical protein (yghB) {Escherichia coli K12-MG1... 56 3e-009 b2136 orf, hypothetical protein (yohD) {Escherichia coli K12-MG1... 50 2e-007 >b0065 orf, hypothetical protein (yabI) {Escherichia coli K12-MG1655} Length = 254 Score = 521 bits (1342), Expect = e-149 Identities = 251/254 (98%), Positives = 254/254 (100%) Query: 1 MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAW 60 MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAW Sbjct: 1 MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAW 60 Query: 61 LAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG 120 LAGI+GCL+GDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG Sbjct: 61 LAGIIGCLMGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG 120 Query: 121 PTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWL 180 PTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWL Sbjct: 121 PTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWL 180 Query: 181 LLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLVRHPL 240 LLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVL+RHPL Sbjct: 181 LLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPL 240 Query: 241 MPVYIDILRKVVGV 254 MPVYIDILRKVVGV Sbjct: 241 MPVYIDILRKVVGV 254 >b3095 orf, hypothetical protein (yqjA) {Escherichia coli K12-MG1655} Length = 220 Score = 66.2 bits (160), Expect = 2e-012 Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 23/149 (15%) Query: 14 VYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWI 73 +Y ++ V+L FLE+ L LPG L+ +G LI G + + L V LG W+ Sbjct: 28 LYFVLFVIL--FLENGLLPAAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWV 85 Query: 74 SF----WLG-------WRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPT 122 S+ WLG W P H + H H+H + +L+GRF+ Sbjct: 86 SYIQGRWLGNTRTVQNWLSHLPAHYHQ----------RAHHLFHKHGLSALLIGRFIAFV 135 Query: 123 RPLVPMVAGMLDLPVAKFITPNIIGCLLW 151 R L+P +AG+ L A+F N + LLW Sbjct: 136 RTLLPTIAGLSGLNNARFQFFNWMSGLLW 164 >b2317 orf, hypothetical protein (dedA) {Escherichia coli K12-MG1655} Length = 219 Score = 62.0 bits (149), Expect = 4e-011 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 3/162 (1%) Query: 5 LEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGAL--IGSGELSFWHAWLA 62 L + + V+ + L+ F E+ +V LPG L+ GAL + + +L+ + Sbjct: 18 LAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLETNDLNVHMMVVL 77 Query: 63 GIVGCLLGDWISFWLGWRFKKPLHRWSFLKK-NKALLDKTEHALHQHSMFTILVGRFVGP 121 ++ ++GD +++ +G F + L K ++ LDKT +H TI++ RFV Sbjct: 78 MLIAAIVGDAVNYTIGRLFGEKLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPI 137 Query: 122 TRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAG 163 R P VAGM + F N+IG LLW + G G Sbjct: 138 VRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFG 179 >b3009 orf, hypothetical protein (yghB) {Escherichia coli K12-MG1655} Length = 219 Score = 55.8 bits (133), Expect = 3e-009 Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 23/151 (15%) Query: 12 STVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGD 71 S VY +M L FLE+ L LPG L+ GALI G + F LG Sbjct: 26 SVVYFVMFATL--FLENGLLPASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGC 83 Query: 72 WISF----WLG-------WRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVG 120 W+S+ WLG W + P + ++ + D+ H + +L GRF+ Sbjct: 84 WLSYIQGRWLGNTKTVKGWLAQLPA---KYHQRATCMFDR-------HGLLALLAGRFLA 133 Query: 121 PTRPLVPMVAGMLDLPVAKFITPNIIGCLLW 151 R L+P +AG+ LP +F N + LLW Sbjct: 134 FVRTLLPTMAGISGLPNRRFQFFNWLSGLLW 164 >b2136 orf, hypothetical protein (yohD) {Escherichia coli K12-MG1655} Length = 204 Score = 49.7 bits (117), Expect = 2e-007 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 9/176 (5%) Query: 31 LVGLILPG-TVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFK-KPLHRW 88 ++G + G TV + G G G L F L+ +G ++GD + + G RF K L R+ Sbjct: 28 VIGSLAEGETVTLLG-GVAAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRF 86 Query: 89 SFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGC 148 S K++ +++ + + +H ++ RF+ R + P + G LP F+ NI+G Sbjct: 87 S---KHQDKIERAQKLIQRHPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGA 143 Query: 149 LLWPPFYFLPGILAGAAIDIPAGMQSGEFK-WLLLATAVFLWVGGWLCWRLWRSGK 203 W + G G I K W+ L V L VG + W L R GK Sbjct: 144 FAWALIFTTIGYAGGQVIAPWLHNLDQHLKHWVWLILVVVLVVG--VRWWLKRRGK 197 Query= Z0075 putative ATP-binding component of a transport system (yabJ) {Escherichia coli O157:H7 EDL933} (232 letters) Score E Sequences producing significant alignments: (bits) Value b0066 putative ATP-binding component of a transport system (yabJ... 419 e-118 b0855 ATP-binding component of putrescine transport system (potG... 151 4e-038 b4035 ATP-binding component of transport system for maltose (mal... 140 7e-035 b1318 putative ATP-binding component of a transport system (ycjV... 139 2e-034 b1126 ATP-binding component of spermidine/putrescine transport (... 137 6e-034 b2422 ATP-binding component of sulfate permease A protein; chrom... 133 9e-033 b1441 putative ATP-binding component of a transport system {Esch... 133 1e-032 b2677 ATP-binding component of transport system for glycine, bet... 131 4e-032 b0809 ATP-binding component of glutamine high-affinity transport... 125 2e-030 b0262 putative ATP-binding component of a transport system (afuC... 124 4e-030 b3450 ATP-binding component of sn-glycerol 3-phosphate transport... 122 2e-029 b0366 taurine ATP-binding component of a transport system (tauB)... 122 2e-029 b0864 ATP-binding component of 3rd arginine transport system (ar... 122 3e-029 b0652 ATP-binding protein of glutamate/aspartate transport syste... 122 3e-029 b0933 putative ATP-binding component of a transport system (ycbE... 120 8e-029 b3271 putative ATP-binding component of a transport system (yhdZ... 117 7e-028 b0199 ATP-binding component of a transporter (abc) {Escherichia ... 116 1e-027 b0765 ATP-binding component of molybdate transport (modC) {Esche... 114 4e-027 b1917 putative ATP-binding component of a transport system (yecC... 113 1e-026 b3195 putative ATP-binding component of a transport system (yrbF... 112 2e-026 b1756 putative ATP-binding component of a transport system {Esch... 107 9e-025 b2306 ATP-binding component of histidine transport (hisP) {Esche... 105 3e-024 b4287 ATP-binding component of citrate-dependent iron(III) trans... 104 6e-024 b0588 ATP-binding component of ferric enterobactin transport (fe... 103 8e-024 b2129 putative ATP-binding component of a transport system (yehX... 103 1e-023 b1117 putative ATP-binding component of a transport system (ycfV... 102 2e-023 b3201 putative ATP-binding component of a transport system (yhbG... 101 5e-023 b3463 ATP-binding component of a membrane-associated complex inv... 100 1e-022 b2180 putative ATP-binding component of a transport system (yejF... 99 2e-022 b0879 putative ATP-binding component of a transport system (ybjZ... 99 2e-022 b1483 putative ATP-binding component of a transport system {Esch... 97 9e-022 b0794 putative ATP-binding component of a transport system (ybhF... 97 9e-022 b4106 ATP-binding component of phosphonate transport (phnC) {Esc... 97 1e-021 b1513 putative ATP-binding component of a transport system {Esch... 96 2e-021 b0151 ATP-binding component of hydroxymate-dependent iron transp... 96 2e-021 b0914 ATP-binding transport protein; multicopy suppressor of htr... 95 5e-021 b0495 putative ATP-binding component of a transport system (ybbA... 94 8e-021 b3540 putative ATP-binding component of dipeptide transport syst... 92 2e-020 b3480 ATP-binding protein of nickel transport system (nikE) {Esc... 91 7e-020 b2547 putative ATP-binding component of a transport system (yphE... 87 1e-018 b0886 ATP-binding component of cytochrome-related transport (cyd... 87 1e-018 b3454 ATP-binding component of leucine transport (livF) {Escheri... 87 1e-018 b1247 homolog of Salmonella ATP-binding protein of oligopeptide ... 86 2e-018 b0887 ATP-binding component of cytochrome-related transport, Zn ... 84 6e-018 b4087 putative ATP-binding component of a transport system (yjcW... 84 8e-018 b1290 putative ATP-binding protein of peptide transport system (... 84 1e-017 b1900 ATP-binding component of high-affinity L-arabinose transpo... 83 2e-017 b3455 ATP-binding component of high-affinity branched-chain amin... 82 2e-017 b0490 putative ATP-binding component of a transport system (ybbL... 82 2e-017 b3749 ATP-binding component of D-ribose high-affinity transport ... 82 3e-017 b2211 putative ATP-binding component of a transport system (yojI... 81 5e-017 b3486 putative ATP-binding component of a transport system, frag... 80 2e-016 b0829 putative ATP-binding component of a transport system {Esch... 80 2e-016 b3479 ATP-binding protein of nickel transport system (nikD) {Esc... 79 3e-016 b0448 ATP-binding component of a transport system (mdlA) {Escher... 79 3e-016 b0127 putative ATP-binding component of a transport system (yadG... 78 4e-016 b1709 ATP-binding component of vitamin B12 transport system (btu... 77 8e-016 b3541 putative ATP-binding component of dipeptide transport syst... 77 1e-015 b3725 ATP-binding component of high-affinity phosphate-specific ... 75 3e-015 b2149 ATP-binding component of methyl-galactoside transport and ... 74 8e-015 b4228 putative ATP-binding component of a transport system (ytfR... 73 1e-014 b1484 putative ATP-binding component of a transport system {Esch... 73 1e-014 b1858 putative ATP-binding component of a transport system (yebM... 73 2e-014 b0760 ATP-binding component of molybdate transport system (modF)... 71 5e-014 b1246 homolog of Salmonella ATP-binding protein of oligopeptide ... 69 2e-013 b3567 putative ATP-binding protein of xylose transport system (x... 69 4e-013 b4097 ATP-binding component of phosphonate transport (phnK) {Esc... 67 1e-012 b0449 putative ATP-binding component of a transport system (mdlB... 65 3e-012 b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia... 65 5e-012 b4096 ATP-binding component of phosphonate transport (phnL) {Esc... 64 9e-012 b4391 putative ATP-binding component of a transport system (yjjK... 63 1e-011 b1291 putative ATP-binding protein of peptide transport system (... 59 3e-010 b3352 putative ATP-binding component of a transport system (yheS... 54 9e-009 b1682 putative ATP-binding component of a transport system (ynhD... 45 4e-006 >b0066 putative ATP-binding component of a transport system (yabJ) {Escherichia coli K12-MG1655} Length = 232 Score = 419 bits (1076), Expect = e-118 Identities = 216/232 (93%), Positives = 217/232 (93%) Query: 1 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG 60 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASG+LTIDG Sbjct: 1 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDG 60 Query: 61 VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGID 120 VDHTT PPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQ KMHAIARQMGID Sbjct: 61 VDHTTMPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQGKMHAIARQMGID 120 Query: 121 NLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK 180 NLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK Sbjct: 121 NLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK 180 Query: 181 MTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNEXXXXXXXXXXXXXITG 232 MTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE ITG Sbjct: 181 MTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLSGKASASALLGITG 232 >b0855 ATP-binding component of putrescine transport system (potG) {Escherichia coli K12-MG1655} Length = 404 Score = 151 bits (381), Expect = 4e-038 Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 2/218 (0%) Query: 1 MLKLTDITWLY--HHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI 58 +L++ ++T Y H SLT+ +GE A+LG SG GKSTLL ++AGF P++G + + Sbjct: 46 LLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIML 105 Query: 59 DGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMG 118 DGVD + PP RP++M+FQ LF H+TV QNI GL A +++ + + Sbjct: 106 DGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVH 165 Query: 119 IDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQ 178 + R P +LSGGQRQRVALAR L + +LLLDEP ALD LR M V ++ Sbjct: 166 MQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILER 225 Query: 179 QKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 +T +MV+H E+A +A R ++ G+ G E Sbjct: 226 VGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 263 >b4035 ATP-binding component of transport system for maltose (malK) {Escherichia coli K12-MG1655} Length = 371 Score = 140 bits (353), Expect = 7e-035 Identities = 81/194 (41%), Positives = 114/194 (58%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 +L + GE V +GPSG GKSTLL +IAG T SG L I TPP+ R V M+FQ Sbjct: 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRV 138 L+ HL+VA+N+ GL V ++++ +A + + +L+ R P LSGGQRQRV Sbjct: 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRV 142 Query: 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIAT 198 A+ R LV E + LLDEP S LD ALR +M +S ++ T++ V+H +A +A Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 Query: 199 RSVVVADGRIAWQG 212 + VV+ GR+A G Sbjct: 203 KIVVLDAGRVAQVG 216 >b1318 putative ATP-binding component of a transport system (ycjV) {Escherichia coli K12-MG1655} Length = 322 Score = 139 bits (350), Expect = 2e-034 Identities = 78/200 (39%), Positives = 112/200 (56%) Query: 13 HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRP 72 H+ F+L + E + +GPSG GKST L +IAG + G L IDG P R Sbjct: 18 HVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGDLLIDGKRMNDVPAKARN 77 Query: 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSG 132 ++M+FQ L+ H+TV N+ GL V E+++ A+ +G+ + R PG LSG Sbjct: 78 IAMVFQNYALYPHMTVYDNMAFGLKMQKIAKEVIDERVNWAAQILGLREYLKRKPGALSG 137 Query: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 GQRQRVAL R +VRE + L+DEP S LD LR +M +S Q+ T++ V+H + Sbjct: 138 GQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTE 197 Query: 193 AARIATRSVVVADGRIAWQG 212 A +ATR V++ DG + G Sbjct: 198 AMTMATRIVIMKDGIVQQVG 217 >b1126 ATP-binding component of spermidine/putrescine transport (potA) {Escherichia coli K12-MG1655} Length = 378 Score = 137 bits (345), Expect = 6e-034 Identities = 78/200 (39%), Positives = 114/200 (57%) Query: 17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSML 76 + LT+ GE + +LGPSG GK+T+L LIAG T SG + +D D T P R V+ + Sbjct: 35 QLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTV 94 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQ 136 FQ LF H+TV +N+ GL A ++ R + ++ R P +LSGGQ+Q Sbjct: 95 FQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQ 154 Query: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARI 196 RVA+AR +V + +LLLDE SALD LR++M + ++ +T + V+H E+A + Sbjct: 155 RVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTM 214 Query: 197 ATRSVVVADGRIAWQGMTNE 216 + R VV+ DGRI G E Sbjct: 215 SDRIVVMRDGRIEQDGTPRE 234 >b2422 ATP-binding component of sulfate permease A protein; chromate resistance (cysA) {Escherichia coli K12-MG1655} Length = 365 Score = 133 bits (335), Expect = 9e-033 Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 4/194 (2%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 SL + G+ VA+LGPSG+GK+TLL +IAG SG + G D + R V +FQ Sbjct: 22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLN----AVQQEKMHAIARQMGIDNLMARLPGELSGGQ 134 LF H+TV NI GL + A + K+ + + + +L R P +LSGGQ Sbjct: 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQ 141 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 +QRVALAR L E ILLLDEPF ALD +R+E+ + ++ K T + V+H E+A Sbjct: 142 KQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAT 201 Query: 195 RIATRSVVVADGRI 208 +A R VV++ G I Sbjct: 202 EVADRVVVMSQGNI 215 >b1441 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 337 Score = 133 bits (334), Expect = 1e-032 Identities = 76/194 (39%), Positives = 117/194 (60%), Gaps = 8/194 (4%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 S+ ++ GE ++LGPSG+GK+T L LIAGF + GA++I G + PP R V+ +FQ Sbjct: 24 SIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGAISIFGKPASNLPPWERDVNTVFQ 83 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQ----MGIDNLMARLPGELSGGQ 134 + LF H+++ N+ GL + V +++ HA+A++ + + + R P +LSGGQ Sbjct: 84 DYALFPHMSILDNVAYGL----MVKGVNKKQRHAMAQEALEKVALGFVHQRKPSQLSGGQ 139 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 RQRVA+AR LV E +LLLDEP ALD LR++M + Q +T + V+H +A Sbjct: 140 RQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELKKLQQSLGITFIFVTHDQGEAL 199 Query: 195 RIATRSVVVADGRI 208 ++ R V +GRI Sbjct: 200 SMSDRVAVFNNGRI 213 >b2677 ATP-binding component of transport system for glycine, betaine and proline (proV) {Escherichia coli K12-MG1655} Length = 400 Score = 131 bits (329), Expect = 4e-032 Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 10/206 (4%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS------RRP 72 SL +E GE I+G SG+GKST++ L+ + P G + IDGVD + R+ Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 Query: 73 VSMLFQENNLFSHLTVAQNIGLGLN-PGLKLNAVQQEKMHAIARQMGIDNLMARLPGELS 131 ++M+FQ L H+TV N G+ G+ +++ + A+ RQ+G++N P ELS Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDAL-RQVGLENYAHSYPDELS 166 Query: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TLVSTSCQQQKMTLLMVSHSV 190 GG RQRV LAR L ILL+DE FSALDP +R EM LV + Q+ T++ +SH + Sbjct: 167 GGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR-TIVFISHDL 225 Query: 191 EDAARIATRSVVVADGRIAWQGMTNE 216 ++A RI R ++ +G + G +E Sbjct: 226 DEAMRIGDRIAIMQNGEVVQVGTPDE 251 >b0809 ATP-binding component of glutamine high-affinity transport system (glnQ) {Escherichia coli K12-MG1655} Length = 240 Score = 125 bits (314), Expect = 2e-030 Identities = 77/201 (38%), Positives = 114/201 (56%), Gaps = 12/201 (5%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPV----SM 75 L + +GE V I+GPSG+GKSTLL I SG L +DG+ R + M Sbjct: 22 LNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 Query: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQM----GIDNLMARLPGELS 131 +FQ+ LF HLT +N+ G L++ +E+ +AR++ G+ P ELS Sbjct: 82 VFQQFYLFPHLTALENVMFG---PLRVRGANKEEAEKLARELLAKVGLAERAHHYPSELS 138 Query: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVE 191 GGQ+QRVA+AR L + ++L DEP SALDP LR E+L V ++ MT+++V+H + Sbjct: 139 GGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLK-VMQDLAEEGMTMVIVTHEIG 197 Query: 192 DAARIATRSVVVADGRIAWQG 212 A ++A+R + + GRIA G Sbjct: 198 FAEKVASRLIFIDKGRIAEDG 218 >b0262 putative ATP-binding component of a transport system (afuC) {Escherichia coli K12-MG1655} Length = 352 Score = 124 bits (312), Expect = 4e-030 Identities = 71/194 (36%), Positives = 111/194 (57%), Gaps = 8/194 (4%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 +LT+ +G+ V +LGPSG GK+T+L L+AG P+ G + IDG D T +R + M+FQ Sbjct: 30 NLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQ 89 Query: 79 ENNLFSHLTVAQNIGLGLN----PGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQ 134 LF H+++ +N+G GL P +L A +E + + ++ R ++SGGQ Sbjct: 90 SYALFPHMSLGENVGYGLKMLGVPRAELKARVKEAL----AMVDLEGFEDRFVDQISGGQ 145 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 +QRVALAR L+ + +LL DEP S LD LR+ M + +Q +T L V+H +A Sbjct: 146 QQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAF 205 Query: 195 RIATRSVVVADGRI 208 ++ +V+ G I Sbjct: 206 AVSDTVLVMNKGHI 219 >b3450 ATP-binding component of sn-glycerol 3-phosphate transport system (ugpC) {Escherichia coli K12-MG1655} Length = 369 Score = 122 bits (307), Expect = 2e-029 Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 5/195 (2%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 +L V GE + ++GPSG GKSTLL ++AG G + I+ T P R ++M+FQ Sbjct: 37 TLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQ 96 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQ--EKMHAIARQMGIDNLMARLPGELSGGQRQ 136 L+ H++V +N+ GL ++ QQ E++ AR + +D L+ R P ELSGGQRQ Sbjct: 97 NYALYPHMSVEENMAWGLK--IRGMGKQQIAERVKEAARILELDGLLKRRPRELSGGQRQ 154 Query: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARI 196 RVA+ R +VR+ + L DEP S LD LR +M + ++ K T L V+H +A + Sbjct: 155 RVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTL 214 Query: 197 ATRSVVVADGRIAWQ 211 A R V+V +G +A Q Sbjct: 215 AQR-VMVMNGGVAEQ 228 >b0366 taurine ATP-binding component of a transport system (tauB) {Escherichia coli K12-MG1655} Length = 255 Score = 122 bits (307), Expect = 2e-029 Identities = 72/188 (38%), Positives = 107/188 (56%), Gaps = 3/188 (1%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 +LT+E GE + +LGPSG GK+TLLNLIAGF+ G++ + G P + R V +FQ Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQLAG-KRIEGPGAERGV--VFQ 77 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRV 138 L V N+ GL + E H + +++G++ R +LSGGQRQRV Sbjct: 78 NEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRV 137 Query: 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIAT 198 +AR L +LLLDEPF ALD R +M TL+ Q+ +L+++H +E+A +AT Sbjct: 138 GIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197 Query: 199 RSVVVADG 206 V+++ G Sbjct: 198 ELVLLSSG 205 >b0864 ATP-binding component of 3rd arginine transport system (artP) {Escherichia coli K12-MG1655} Length = 242 Score = 122 bits (305), Expect = 3e-029 Identities = 83/227 (36%), Positives = 126/227 (55%), Gaps = 22/227 (9%) Query: 2 LKLTDITWLYHHLPMRFSLTVE--RGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTID 59 ++L I Y F +T++ +GE + +LGPSGAGKS+LL ++ P SG L I Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 60 G--VDHTTTPPS------RRPVSMLFQENNLFSHLTVAQNI------GLGLNPGLKLNAV 105 G D T TP RR V M+FQ+ NL+ HLTV QN+ LGL+ L Sbjct: 63 GNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122 Query: 106 QQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 ++ + ++ + R P LSGGQ+QRVA+AR L+ E +LL DEP +ALDP + Sbjct: 123 EK-----LLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177 Query: 166 QEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 ++++++ + +T ++V+H VE A + A+R V + +G I QG Sbjct: 178 AQIVSII-RELAETNITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 >b0652 ATP-binding protein of glutamate/aspartate transport system (gltL) {Escherichia coli K12-MG1655} Length = 241 Score = 122 bits (305), Expect = 3e-029 Identities = 75/215 (34%), Positives = 120/215 (55%), Gaps = 8/215 (3%) Query: 1 MLKLTDITWLYHHLPMRF--SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI 58 M+ L +++ Y H + S V++GE V + GPSG+GKSTL+ + G G +T+ Sbjct: 1 MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV 60 Query: 59 DGV----DHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN-AVQQEKMHAI 113 DG+ T R V M+FQ LF HL++ +N+ L LK + A +EK + Sbjct: 61 DGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKL 120 Query: 114 ARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173 ++G+ + P +LSGGQ+QRVA+AR L + +L DEP SALDP + E+L V Sbjct: 121 LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLD-VM 179 Query: 174 TSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRI 208 + MT+++V+H + A ++A R + + +G+I Sbjct: 180 VELANEGMTMMVVTHEMGFARKVANRVIFMDEGKI 214 >b0933 putative ATP-binding component of a transport system (ycbE) {Escherichia coli K12-MG1655} Length = 255 Score = 120 bits (301), Expect = 8e-029 Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 13/194 (6%) Query: 17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS--RRPVS 74 + L + G+ VA++G SG GKSTLL L+AG TP +G + TTP + + Sbjct: 29 QLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLAG-----TTPLAEIQEDTR 83 Query: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQ 134 M+FQ+ L +V N+GLGL G +A ++ A+A +G++N P LSGGQ Sbjct: 84 MMFQDARLLPWKSVIDNVGLGLK-GQWRDAARR----ALAA-VGLENRAGEWPAALSGGQ 137 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 +QRVALAR L+ +LLLDEP ALD R EM L+ + Q+ T+L+V+H V +A Sbjct: 138 KQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQEHGFTVLLVTHDVSEAV 197 Query: 195 RIATRSVVVADGRI 208 +A R +++ +G+I Sbjct: 198 AMADRVLLIEEGKI 211 >b3271 putative ATP-binding component of a transport system (yhdZ) {Escherichia coli K12-MG1655} Length = 252 Score = 117 bits (293), Expect = 7e-028 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 12/225 (5%) Query: 1 MLKLTDITWLY--HHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI 58 M+ L ++ Y H+ +LTV+ GE++ + GPSG+GKST + I G + + Sbjct: 12 MITLENVNKWYGQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVV 71 Query: 59 DGV----DHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKM--HA 112 DG+ D R+ V M+FQ NLF HLTV QN L K+ + E + H Sbjct: 72 DGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMPKKEAEDLAVHY 131 Query: 113 IARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TL 171 + R + I + PG++SGGQ+QRVA+AR L + I+L DEP SALDP + +E+L T+ Sbjct: 132 LER-VRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTM 190 Query: 172 VSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 + + Q MT+L V+H + A +A R + + G I Q +E Sbjct: 191 IGLA--QSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDE 233 >b0199 ATP-binding component of a transporter (abc) {Escherichia coli K12-MG1655} Length = 343 Score = 116 bits (290), Expect = 1e-027 Identities = 74/227 (32%), Positives = 118/227 (51%), Gaps = 11/227 (4%) Query: 1 MLKLTDITWLYHHLPMRF------SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASG 54 M+KL++IT ++H SL V G+ ++G SGAGKSTL+ + P G Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60 Query: 55 ALTIDGVDHTTTPPS-----RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEK 109 ++ +DG + TT S RR + M+FQ NL S TV N+ L L + + Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120 Query: 110 MHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169 + + +G+ + P LSGGQ+QRVA+AR L +LL DE SALDPA + +L Sbjct: 121 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180 Query: 170 TLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 L+ ++ +T+L+++H ++ RI V+++G + Q +E Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 227 >b0765 ATP-binding component of molybdate transport (modC) {Escherichia coli K12-MG1655} Length = 352 Score = 114 bits (286), Expect = 4e-027 Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 13/222 (5%) Query: 1 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG 60 ML+L L +H + + T+ AI G SGAGK++L+N I+G P G + ++G Sbjct: 1 MLELNFSQTLGNHC-LTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNG 59 Query: 61 ------VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIA 114 P +R V +FQ+ LF H V N+ G++ + Q +K+ A+ Sbjct: 60 RVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSM---VDQFDKLVAL- 115 Query: 115 RQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVST 174 +GI+ L+ RLPG LSGG++QRVA+ R L+ +LLLDEP ++LD ++E+L + Sbjct: 116 --LGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQR 173 Query: 175 SCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 ++ + +L VSHS+++ +A R +V+ +G++ G E Sbjct: 174 LTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEE 215 >b1917 putative ATP-binding component of a transport system (yecC) {Escherichia coli K12-MG1655} Length = 250 Score = 113 bits (283), Expect = 1e-026 Identities = 76/207 (36%), Positives = 111/207 (53%), Gaps = 18/207 (8%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS---------- 69 L V+ GE VAI+GPSG+GK+TLL I P +G +T+ + T Sbjct: 24 LEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQL 83 Query: 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQM----GIDNLMAR 125 R+ V +FQ NLF H TV +NI + + + +E+ A AR++ G+ Sbjct: 84 RQHVGFVFQNFNLFPHRTVLENI---IEGPVIVKGEPKEEATARARELLAKVGLAGKETS 140 Query: 126 LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLM 185 P LSGGQ+QRVA+AR L ++L DEP SALDP L E+L + Q+K T+++ Sbjct: 141 YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTI-RQLAQEKRTMVI 199 Query: 186 VSHSVEDAARIATRSVVVADGRIAWQG 212 V+H + A +A R++ + GRI QG Sbjct: 200 VTHEMSFARDVADRAIFMDQGRIVEQG 226 >b3195 putative ATP-binding component of a transport system (yrbF) {Escherichia coli K12-MG1655} Length = 269 Score = 112 bits (281), Expect = 2e-026 Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 14/204 (6%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSR-----RPV 73 SLTV RG+ AI+GPSG GK+TLL LI G + P G + DG + SR + + Sbjct: 28 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 87 Query: 74 SMLFQENNLFSHLTVAQNIGLGLN-----PGLKLNAVQQEKMHAIARQMGIDNLMARLPG 128 SMLFQ LF+ + V N+ L P L++ K+ A+ G+ +P Sbjct: 88 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV----GLRGAAKLMPS 143 Query: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSH 188 ELSGG +R ALAR + E +++ DEPF DP ++ L+S +T ++VSH Sbjct: 144 ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSH 203 Query: 189 SVEDAARIATRSVVVADGRIAWQG 212 V + IA + ++AD +I G Sbjct: 204 DVPEVLSIADHAWILADKKIVAHG 227 >b1756 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 217 Score = 107 bits (266), Expect = 9e-025 Identities = 66/177 (37%), Positives = 99/177 (55%), Gaps = 4/177 (2%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTP---ASGALTIDGVDHTTTPPSRRPVSM 75 + TV++G+ V ++GPSG GKSTL + + G L +G L ++ P ++R + + Sbjct: 21 NFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGI 80 Query: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQR 135 LFQ+ LF +V QN+ L L LK NA + A+ R G++ + P LSGGQR Sbjct: 81 LFQDALLFDQFSVGQNLLLALPATLKGNARRNAVNDALERS-GLEGAFHQDPATLSGGQR 139 Query: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 RVAL R L+ + LLLDEPFS LD ALR V + + + ++ V+H ++D Sbjct: 140 ARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQD 196 >b2306 ATP-binding component of histidine transport (hisP) {Escherichia coli K12-MG1655} Length = 257 Score = 105 bits (262), Expect = 3e-024 Identities = 70/218 (32%), Positives = 115/218 (52%), Gaps = 18/218 (8%) Query: 12 HHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG----------- 60 H + SL G+ ++I+G SG+GKST L I P+ G++ ++G Sbjct: 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77 Query: 61 ----VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQ-QEKMHAIAR 115 D R ++M+FQ NL+SH+TV +N+ L L+ + +E+ Sbjct: 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLA 137 Query: 116 QMGIDN-LMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVST 174 ++GID + P LSGGQ+QRV++AR L E +LL DEP SALDP L E+L ++ Sbjct: 138 KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ 197 Query: 175 SCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 ++ K T+++V+H + A ++T + + G+I +G Sbjct: 198 LAEEGK-TMVVVTHEMGFARHVSTHVIFLHQGKIEEEG 234 >b4287 ATP-binding component of citrate-dependent iron(III) transport protein (fecE) {Escherichia coli K12-MG1655} Length = 255 Score = 104 bits (259), Expect = 6e-024 Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 7/204 (3%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI--DGVDHTTTPPSRRPVSML 76 SL++ G+ A++GP+G GKSTLLN + L P SG + + + ++ ++ R +S+L Sbjct: 22 SLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFLGDNPINMLSSRQLARRLSLL 81 Query: 77 FQENNLFSHLTVAQNIGLGLNPGL----KLNAVQQEKMHAIARQMGIDNLMARLPGELSG 132 Q + +TV + + G NP L +L+A +++ Q I++L R ELSG Sbjct: 82 PQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVNVAMNQTRINHLAVRRLTELSG 141 Query: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 GQRQR LA L + P++LLDEP + LD + +++ L+ + Q T++ V H + Sbjct: 142 GQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRLMG-ELRTQGKTVVAVLHDLNQ 200 Query: 193 AARIATRSVVVADGRIAWQGMTNE 216 A+R + VV+A+G + QG E Sbjct: 201 ASRYCDQLVVMANGHVMAQGTPEE 224 >b0588 ATP-binding component of ferric enterobactin transport (fepC) {Escherichia coli K12-MG1655} Length = 271 Score = 103 bits (258), Expect = 8e-024 Identities = 74/223 (33%), Positives = 116/223 (52%), Gaps = 8/223 (3%) Query: 2 LKLTDITWLYHHLPMRFSLTVE--RGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTID 59 L+ +T Y + +LTVE G AI+GP+G GKSTLL ++ +TPA G + +D Sbjct: 8 LRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLD 67 Query: 60 G--VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL-NAVQQEKMHAIARQ 116 G + H + R + +L Q +TV + + G P L ++E A+ + Sbjct: 68 GEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKA 127 Query: 117 M---GIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173 M GI +L + LSGGQRQR +A L +E I+LLDEP + LD + + ++L L+S Sbjct: 128 MQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187 Query: 174 TSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 +++ TL V H + A R A+ + + +G+I QG E Sbjct: 188 ELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKE 230 >b2129 putative ATP-binding component of a transport system (yehX) {Escherichia coli K12-MG1655} Length = 308 Score = 103 bits (256), Expect = 1e-023 Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 3/197 (1%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTP--PSRRPVSML 76 +L + G ++G SG+GKST L +I + SG + G + + P RR + Sbjct: 21 NLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGEIRFAGEEIRSLPVLELRRRMGYA 80 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGID-NLMARLPGELSGGQR 135 Q LF H +VAQNI A +++ + +G++ NL R P +LSGGQ+ Sbjct: 81 IQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQ 140 Query: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAAR 195 QRV +AR L + +LL+DEPF ALDP R + ++ + T+++V+H +++A R Sbjct: 141 QRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALR 200 Query: 196 IATRSVVVADGRIAWQG 212 +A V++ G + QG Sbjct: 201 LAEHLVLMDHGEVVQQG 217 >b1117 putative ATP-binding component of a transport system (ycfV) {Escherichia coli K12-MG1655} Length = 228 Score = 102 bits (255), Expect = 2e-023 Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 7/196 (3%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRP------ 72 S +V GE +AI+G SG+GKSTLL+L+ G TP SG + +G + + + Sbjct: 24 SFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 83 Query: 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSG 132 + ++Q ++L T +N+ + L G K A + + + +G+D+ P ELSG Sbjct: 84 LGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLKAVGLDHRANHRPSELSG 143 Query: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 G+RQRVA+AR LV ++L DEP LD + L+ + Q L+V+H ++ Sbjct: 144 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 203 Query: 193 AARIATRSVVVADGRI 208 A R+ +R + + DGR+ Sbjct: 204 AKRM-SRQLEMRDGRL 218 >b3201 putative ATP-binding component of a transport system (yhbG) {Escherichia coli K12-MG1655} Length = 241 Score = 101 bits (251), Expect = 5e-023 Identities = 63/202 (31%), Positives = 108/202 (53%), Gaps = 5/202 (2%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTP---PSRRPVSM 75 SLTV GE V +LGP+GAGK+T ++ G + +G + ID D + P +RR + Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGY 82 Query: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQE-KMHAIARQMGIDNLMARLPGELSGGQ 134 L QE ++F L+V N+ L L+A Q+E + + + + I++L + LSGG+ Sbjct: 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGE 142 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 R+RV +AR L +LLDEPF+ +DP ++ ++ + + +L+ H+V + Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIE-HLRDSGLGVLITDHNVRETL 201 Query: 195 RIATRSVVVADGRIAWQGMTNE 216 + R+ +V+ G + G E Sbjct: 202 AVCERAYIVSQGHLIAHGTPTE 223 >b3463 ATP-binding component of a membrane-associated complex involved in cell division (ftsE) {Escherichia coli K12-MG1655} Length = 222 Score = 100 bits (248), Expect = 1e-022 Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 6/192 (3%) Query: 22 VERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTT-----TPPSRRPVSML 76 ++ GE + G SGAGKSTLL LI G P++G + G D T P RR + M+ Sbjct: 25 MQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMI 84 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQ 136 FQ+++L TV N+ + L + ++ A ++G+ + P +LSGG++Q Sbjct: 85 FQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144 Query: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARI 196 RV +AR +V + +LL DEP LD AL + +L L + +T+LM +H + +R Sbjct: 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE-EFNRVGVTVLMATHDINLISRR 203 Query: 197 ATRSVVVADGRI 208 + R + ++DG + Sbjct: 204 SYRMLTLSDGHL 215 >b2180 putative ATP-binding component of a transport system (yejF) {Escherichia coli K12-MG1655} Length = 529 Score = 99.4 bits (246), Expect = 2e-022 Identities = 66/204 (32%), Positives = 113/204 (55%), Gaps = 11/204 (5%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG-----VDHTTTPPSRRPV 73 S T+ GE + ++G SG+GKST L L + G++ DG ++ P R + Sbjct: 306 SFTLRAGETLGLVGESGSGKSTT-GLALLRLINSQGSIIFDGQPLQNLNRRQLLPIRHRI 364 Query: 74 SMLFQENN--LFSHLTVAQNIGLGLNPGLK-LNAVQQEK-MHAIARQMGID-NLMARLPG 128 ++FQ+ N L L V Q I GL L+A Q+E+ + A+ ++G+D R P Sbjct: 365 QVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMHEVGLDPETRHRYPA 424 Query: 129 ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSH 188 E SGGQRQR+A+AR L+ + +++LDEP S+LD ++ ++LTL+ + Q+ ++ L +SH Sbjct: 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISH 484 Query: 189 SVEDAARIATRSVVVADGRIAWQG 212 + + + +++ G + QG Sbjct: 485 DLHVVRALCHQVIILRQGEVVEQG 508 Score = 81.6 bits (200), Expect = 4e-017 Identities = 65/211 (30%), Positives = 109/211 (51%), Gaps = 19/211 (9%) Query: 19 SLTVERGEQVAILGPSGAGKS-TLLNLIAGFLTPA----SGALTIDGV------DHTTTP 67 SL +E GE +A++G SG+GKS T L+++ +P SG + G D T Sbjct: 29 SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRG 88 Query: 68 PSRRPVSMLFQEN----NLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLM 123 ++M+FQE N L L L+ G++ A + E ++ + R +GI Sbjct: 89 VRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDR-VGIRQAA 147 Query: 124 ARL---PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK 180 RL P +LSGG+RQRV +A L+ +L+ DEP +ALD +++ ++L L+ + Sbjct: 148 KRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELN 207 Query: 181 MTLLMVSHSVEDAARIATRSVVVADGRIAWQ 211 M +L ++H++ ++A R V+ +GR Q Sbjct: 208 MGMLFITHNLSIVRKLAHRVAVMQNGRCVEQ 238 >b0879 putative ATP-binding component of a transport system (ybjZ) {Escherichia coli K12-MG1655} Length = 648 Score = 99.4 bits (246), Expect = 2e-022 Identities = 63/199 (31%), Positives = 109/199 (54%), Gaps = 14/199 (7%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS------RRP 72 SL + GE VAI+G SG+GKSTL+N++ SG + G D T R Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREH 87 Query: 73 VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKM---HAIARQMGIDNLMARLPGE 129 +FQ +L SHLT QN+ + P + +++++ + +++G+++ P + Sbjct: 88 FGFIFQRYHLLSHLTAEQNVEV---PAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQ 144 Query: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHS 189 LSGGQ+QRV++AR L+ ++L DEP ALD +E++ ++ + + T+++V+H Sbjct: 145 LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILH-QLRDRGHTVIIVTHD 203 Query: 190 VEDAARIATRSVVVADGRI 208 + AA+ A R + + DG I Sbjct: 204 PQVAAQ-AERVIEIRDGEI 221 >b1483 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 308 Score = 97.1 bits (240), Expect = 9e-022 Identities = 68/197 (34%), Positives = 109/197 (55%), Gaps = 12/197 (6%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQE 79 L + RGE + I+G SG GKSTL L+ G L P+ G G S+R + M+FQ+ Sbjct: 37 LQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG--------SQRIMQMVFQD 88 Query: 80 --NNLFSHLTVAQNIGLGLNPGLKLNAVQQEKM-HAIARQMGI-DNLMARLPGELSGGQR 135 ++L L V + I L + + Q+ + +A Q+GI + RLP SGGQR Sbjct: 89 PLSSLNPRLPVWRIITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQR 148 Query: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAAR 195 QR+A+AR L + +++LDEP SALD +++ ++L L+ T + +T +++SH+V Sbjct: 149 QRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRH 208 Query: 196 IATRSVVVADGRIAWQG 212 ++ R V+ G+I G Sbjct: 209 MSDRVAVMYLGQIVELG 225 >b0794 putative ATP-binding component of a transport system (ybhF) {Escherichia coli K12-MG1655} Length = 583 Score = 97.1 bits (240), Expect = 9e-022 Identities = 62/199 (31%), Positives = 108/199 (54%), Gaps = 3/199 (1%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD-HTTTPPSRRPVSMLF 77 + V+RGE +LGP+GAGKST ++ G L P SG + G+D ++ +R+ + + Sbjct: 354 NFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKARQHLGYMA 413 Query: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQR 137 Q+ +L+ +LTV QN+ Q EK+ ++ G+ ++ + EL G +QR Sbjct: 414 QKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQR 473 Query: 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIA 197 +ALA L+ E IL LDEP S +DP R+E ++ S ++ +T+++ +H + D A Sbjct: 474 LALACSLMHEPDILFLDEPTSGVDPLTRREFWLHIN-SMVEKGVTVMVTTHFM-DEAEYC 531 Query: 198 TRSVVVADGRIAWQGMTNE 216 R +V G++ G ++ Sbjct: 532 DRIGLVYRGKLIASGTPDD 550 Score = 91.7 bits (226), Expect = 4e-020 Identities = 59/193 (30%), Positives = 98/193 (50%), Gaps = 3/193 (1%) Query: 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPV-SMLFQE 79 T+ G ++GP GAGK+TL+ ++AG L P SG+ T+ G D + V + Q+ Sbjct: 34 TIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQK 93 Query: 80 NNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVA 139 L+ LTV +N+ L + +++ + + RL G+LSGG +Q++ Sbjct: 94 FGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLG 153 Query: 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATR 199 LA LV E +LLLDEP +DP R+E+ +V + L++ S S D A Sbjct: 154 LACTLVGEPKVLLLDEPGVGVDPISRRELWQMVHELAGEG--MLILWSTSYLDEAEQCRD 211 Query: 200 SVVVADGRIAWQG 212 +++ +G + +QG Sbjct: 212 VLLMNEGELLYQG 224 >b4106 ATP-binding component of phosphonate transport (phnC) {Escherichia coli K12-MG1655} Length = 262 Score = 96.7 bits (239), Expect = 1e-021 Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 20/228 (8%) Query: 8 TWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLT-PASGALTIDGVDHTTT 66 T+ H L + GE VA+LGPSG+GKSTLL ++G +T S I+ + T Sbjct: 13 TFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGSHIELLGRTVQ 72 Query: 67 PP---------SRRPVSMLFQENNLFSHLTVAQNI---GLGLNPGLKL------NAVQQE 108 SR +FQ+ NL + L+V +N+ LG P + +Q Sbjct: 73 REGRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTGEQKQR 132 Query: 109 KMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168 + A+ R +G+ + + LSGGQ+QRVA+AR L+++ ++L DEP ++LDP + + Sbjct: 133 ALQALTR-VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIV 191 Query: 169 LTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 + + Q +T+++ H V+ A R R V + G + + G + + Sbjct: 192 MDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 >b1513 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 511 Score = 96.3 bits (238), Expect = 2e-021 Identities = 65/199 (32%), Positives = 105/199 (52%), Gaps = 8/199 (4%) Query: 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPP---SRRPVSMLF 77 T+ +GE A+LG +GAGKSTL+ +IAG SG L I+G ++ P + + ++ Sbjct: 33 TLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVHAHQLGIYLVP 92 Query: 78 QENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQR 137 QE LF L++ +NI GL + +KM + +G + L G L RQ Sbjct: 93 QEPLLFPSLSIKENILF----GLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVADRQM 148 Query: 138 VALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIA 197 V + R L+R+ IL+LDEP ++L PA + + + + + ++ +SH + + +IA Sbjct: 149 VEILRGLMRDSRILILDEPTASLTPAETERLFSRLQ-ELLATGVGIVFISHKLPEIRQIA 207 Query: 198 TRSVVVADGRIAWQGMTNE 216 R V+ DG IA G T+E Sbjct: 208 DRISVMRDGTIALSGKTSE 226 Score = 62.8 bits (151), Expect = 2e-011 Identities = 53/207 (25%), Positives = 96/207 (46%), Gaps = 13/207 (6%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLF- 77 SLT+ GE + + G GAG++ L + G T G + ++G + R + L Sbjct: 283 SLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLVY 342 Query: 78 -----QENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHA-IARQMGIDNLMARLPGE-- 129 Q + L ++A N+ L L+ + K +A + R N+ P + Sbjct: 343 LPEDRQSSGLNLDASLAWNV-CALTHNLRGFWAKTAKDNATLERYRRALNIKFNQPEQAA 401 Query: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 LSGG +Q++ +A+CL +L++DEP +D + R ++ L+ S Q + +L++S Sbjct: 402 RTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLL-RSIAAQNVAVLLIS 460 Query: 188 HSVEDAARIATRSVVVADGRIAWQGMT 214 +E+ +A R V+ G I +T Sbjct: 461 SDLEEIELMADRVYVMHQGEITHSALT 487 >b0151 ATP-binding component of hydroxymate-dependent iron transport (fhuC) {Escherichia coli K12-MG1655} Length = 265 Score = 95.9 bits (237), Expect = 2e-021 Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 6/204 (2%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG--VDHTTTPPSRRPVSML 76 SLT G+ ++G +G+GKSTLL ++ P+ G + +D ++ ++ R V+ L Sbjct: 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 Query: 77 FQENNLFSHLTVAQNIGLGLNPGL----KLNAVQQEKMHAIARQMGIDNLMARLPGELSG 132 Q+ +TV + + +G P + A +EK+ +G+ L RL LSG Sbjct: 91 PQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSG 150 Query: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 G+RQR +A + ++ LLLDEP SALD A + ++L+LV Q++ +T++ V H + Sbjct: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINM 210 Query: 193 AARIATRSVVVADGRIAWQGMTNE 216 AAR V + G + QG E Sbjct: 211 AARYCDYLVALRGGEMIAQGTPAE 234 >b0914 ATP-binding transport protein; multicopy suppressor of htrB (msbA) {Escherichia coli K12-MG1655} Length = 582 Score = 94.7 bits (234), Expect = 5e-021 Identities = 70/206 (33%), Positives = 105/206 (50%), Gaps = 12/206 (5%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD--HTTTPPSRRPVSML 76 +L + G+ VA++G SG+GKST+ +LI F G + +DG D T R V+++ Sbjct: 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALV 422 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQM------GIDNLMARLPGEL 130 Q +LF+ TVA NI +++ A A G+D ++ L Sbjct: 423 SQNVHLFND-TVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 Query: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSV 190 SGGQRQR+A+AR L+R+ PIL+LDE SALD E + Q+ T L+++H + Sbjct: 482 SGGQRQRIAIARALLRDSPILILDEATSALD--TESERAIQAALDELQKNRTSLVIAHRL 539 Query: 191 EDAARIATRSVVVADGRIAWQGMTNE 216 + A VVV DG I +G N+ Sbjct: 540 STIEK-ADEIVVVEDGVIVERGTHND 564 >b0495 putative ATP-binding component of a transport system (ybbA) {Escherichia coli K12-MG1655} Length = 228 Score = 94.0 bits (232), Expect = 8e-021 Identities = 61/182 (33%), Positives = 98/182 (53%), Gaps = 6/182 (3%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD-HTTTPPSR-----RPV 73 L V+RGE +A++G SG+GKSTLL ++AG +SG +++ G H +R + V Sbjct: 31 LVVKRGETIALVGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHV 90 Query: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGG 133 +FQ L L +N+ L + +A + A+ Q+G+ + LP +LSGG Sbjct: 91 GFVFQSFMLIPTLNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGG 150 Query: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDA 193 ++QRVALAR +L DEP LD ++ L+ + ++ TL+MV+H ++ A Sbjct: 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLA 210 Query: 194 AR 195 AR Sbjct: 211 AR 212 >b3540 putative ATP-binding component of dipeptide transport system (dppF) {Escherichia coli K12-MG1655} Length = 334 Score = 92.4 bits (228), Expect = 2e-020 Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 13/209 (6%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS-----RRPV 73 S +ERG+ +A++G SG GKSTL L+ P G L G D P R+ + Sbjct: 42 SFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLRRQKI 101 Query: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAV-----QQEKMHAIARQMGIDNL-MARLP 127 ++FQ N + L + +G L L +N ++EK ++ ++G+ R P Sbjct: 102 QIVFQ--NPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYP 159 Query: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 SGGQRQR+A+AR L+ + +++ DEP SALD ++R ++L L+ Q+ ++ + +S Sbjct: 160 HMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFIS 219 Query: 188 HSVEDAARIATRSVVVADGRIAWQGMTNE 216 H + IA +V+ GR +G ++ Sbjct: 220 HDLSVVEHIADEVMVMYLGRCVEKGTKDQ 248 >b3480 ATP-binding protein of nickel transport system (nikE) {Escherichia coli K12-MG1655} Length = 268 Score = 90.9 bits (224), Expect = 7e-020 Identities = 65/202 (32%), Positives = 106/202 (52%), Gaps = 15/202 (7%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG-----VDHTTTPPSRRPV 73 SLT++ GE VA+LG SG GKSTL L+ G +PA G ++ G ++ RR + Sbjct: 32 SLTLKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAKLNRAQRKAFRRDI 91 Query: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGI-------DNLMARL 126 M+FQ++ S + + + L ++ + + +K +AR + D+++ + Sbjct: 92 QMVFQDS--ISAVNPRKTVREILREPMR-HLLSLKKSEQLARASEMLKAVDLDDSVLDKR 148 Query: 127 PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMV 186 P +LSGGQ QRV LAR L E +L+LDE S LD L+ ++ L+ QQ L + Sbjct: 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFI 208 Query: 187 SHSVEDAARIATRSVVVADGRI 208 +H + R R +V+ +G+I Sbjct: 209 THDLRLVERFCQRVMVMDNGQI 230 >b2547 putative ATP-binding component of a transport system (yphE) {Escherichia coli K12-MG1655} Length = 503 Score = 87.0 bits (214), Expect = 1e-018 Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 10/200 (5%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI-----DGVDHT-TTPPSRRP 72 + T+ +GE A+LG +GAGKSTL+ ++ G P SG + I +G + T T + Sbjct: 30 NFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELG 89 Query: 73 VSMLFQENNLFSHLTVAQNIGLGLNP---GLKLNAVQQEKMHAIARQMGIDNLMARLPGE 129 V ++QE +L LTVA+N+ LG P G+ + + +G+D +L Sbjct: 90 VRAVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVST 149 Query: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHS 189 LS Q+Q V +AR + E +++LDEP S+L A E++ + ++ VSH Sbjct: 150 LSPAQKQLVEIARVMKGEPRVVILDEPTSSLASA-EVELVISAVKKMSALGVAVIYVSHR 208 Query: 190 VEDAARIATRSVVVADGRIA 209 +E+ RIA+ + V+ DG++A Sbjct: 209 MEEIRRIASCATVMRDGQVA 228 Score = 63.9 bits (154), Expect = 9e-012 Identities = 56/207 (27%), Positives = 90/207 (43%), Gaps = 27/207 (13%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTT------------- 65 S T+ RGE + I G GAG+S LL I G G + I+G T Sbjct: 282 SFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKRGIGY 341 Query: 66 TPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQ-----EKMHAIARQMGID 120 TP +R+ E + L V +N L + N V Q + ++M + Sbjct: 342 TPENRK-------EAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVK 394 Query: 121 NLMARLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQ 179 + P G LSGG +Q+V + R + ILLLDEP +D +Q++ +V + Sbjct: 395 AASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEG 454 Query: 180 KMTLLMVSHSVEDAARIATRSVVVADG 206 K +++ +S VE+ + R +++ G Sbjct: 455 K-SVVFISSEVEELPLVCDRILLLQHG 480 >b0886 ATP-binding component of cytochrome-related transport (cydC) {Escherichia coli K12-MG1655} Length = 573 Score = 87.0 bits (214), Expect = 1e-018 Identities = 65/221 (29%), Positives = 116/221 (52%), Gaps = 15/221 (6%) Query: 2 LKLTDITWLYHHLPMR----FSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALT 57 L L D+ + Y + SL V GE +AILG +G GKSTLL + P G + Sbjct: 339 LTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEIL 398 Query: 58 IDG--VDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQ----EKMH 111 ++ + R+ +S++ Q +LFS T+ N+ L +PG A+ + + Sbjct: 399 LNDSPIASLNEAALRQTISVVPQRVHLFS-ATLRDNLLLA-SPGSSDEALSEILRRVGLE 456 Query: 112 AIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTL 171 + G+++ + +LSGG+ +R+A+AR L+ + P++LLDEP LD ++L L Sbjct: 457 KLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILEL 516 Query: 172 VSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 ++ +++ T+LMV+H + +R + +V+ +G+I QG Sbjct: 517 LAEMMREK--TVLMVTHRLRGLSRF-QQIIVMDNGQIIEQG 554 >b3454 ATP-binding component of leucine transport (livF) {Escherichia coli K12-MG1655} Length = 241 Score = 86.7 bits (213), Expect = 1e-018 Identities = 58/195 (29%), Positives = 101/195 (51%), Gaps = 9/195 (4%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHT---TTPPSRRPVSM 75 SL + +GE V ++G +GAGK+TLL + G SG + D D T T R V++ Sbjct: 29 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMREAVAI 88 Query: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAVQ-QEKMHAIARQM-GIDNLMARLPGELSGG 133 + + +FS +TV +N+ +G G Q QE++ + + + G +SGG Sbjct: 89 VPEGRRVFSRMTVEENLAMG---GFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGG 145 Query: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDA 193 ++Q +A+ R L+ +LLLDEP L P + Q++ + ++Q MT+ +V + A Sbjct: 146 EQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIE-QLREQGMTIFLVEQNANQA 204 Query: 194 ARIATRSVVVADGRI 208 ++A R V+ +G + Sbjct: 205 LKLADRGYVLENGHV 219 >b1247 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppF) {Escherichia coli K12-MG1655} Length = 334 Score = 85.9 bits (211), Expect = 2e-018 Identities = 59/209 (28%), Positives = 109/209 (52%), Gaps = 12/209 (5%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS-----RRPV 73 +L + GE + ++G SG GKST I G + G + G + P R + Sbjct: 44 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSDI 103 Query: 74 SMLFQEN--NLFSHLTVAQNIGLGL---NPGLKLNAVQQEKMHAIARQMGI-DNLMARLP 127 M+FQ+ +L +T+ + I L +P + V+ E++ A+ ++G+ NL+ R P Sbjct: 104 QMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVR-ERVKAMMLKVGLLPNLINRYP 162 Query: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 E SGGQ QR+ +AR L+ E +++ DEP SALD +++ +++ L+ ++ ++L+ ++ Sbjct: 163 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 222 Query: 188 HSVEDAARIATRSVVVADGRIAWQGMTNE 216 H + I+ R +V+ G G +E Sbjct: 223 HDLAVVKHISDRVLVMYLGHAVELGTYDE 251 >b0887 ATP-binding component of cytochrome-related transport, Zn sensitive (cydD) {Escherichia coli K12-MG1655} Length = 588 Score = 84.3 bits (207), Expect = 6e-018 Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 22/209 (10%) Query: 15 PMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD-HTTTPPSRRPV 73 P+ F+L G++ ++G SG+GKS+LLN ++GFL+ G+L I+G++ +P S R Sbjct: 368 PLNFTLPA--GQRAVLVGRSGSGKSSLLNALSGFLS-YQGSLRINGIELRDLSPESWRKH 424 Query: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQ----------MGIDNLM 123 +N T+ N+ L + +A +QE A+ G+D + Sbjct: 425 LSWVGQNPQLPAATLRDNVLLA-----RPDASEQELQAALDNAWVSEFLPLLPQGVDTPV 479 Query: 124 ARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTL 183 LS GQ QRVA+AR L+ +LLLDEP ++LD Q ++ ++ + +Q T Sbjct: 480 GDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQ--TT 537 Query: 184 LMVSHSVEDAARIATRSVVVADGRIAWQG 212 LMV+H +ED A V+ DGRI QG Sbjct: 538 LMVTHQLEDLADWDV-IWVMQDGRIIEQG 565 >b4087 putative ATP-binding component of a transport system (yjcW) {Escherichia coli K12-MG1655} Length = 510 Score = 84.0 bits (206), Expect = 8e-018 Identities = 55/214 (25%), Positives = 108/214 (50%), Gaps = 11/214 (5%) Query: 13 HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTP---PS 69 H +LTV GE A+LG +GAGKSTL+ +++G P G +TI+ + + + Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAA 78 Query: 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL---NAVQQEKMHAIARQM----GIDNL 122 + + +++QE ++ LTV +N+ +G + K+ N + +M A M G+ Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVD 138 Query: 123 MARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMT 182 + LS +Q + +A+ L+ + ++++DEP S+L + L L+ +++ Sbjct: 139 LDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK-EVDYLFLIMNQLRKEGTA 197 Query: 183 LLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 ++ +SH + + RI R V+ DG G+ ++ Sbjct: 198 IVYISHKLAEIRRICDRYTVMKDGSSVCSGIVSD 231 Score = 60.1 bits (144), Expect = 1e-010 Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 22/215 (10%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPP------SRRP 72 S +V RGE + G G+G++ L+N + G A G + ++G D + P Sbjct: 283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAY 342 Query: 73 VSMLFQENNLFSHLTVAQNIGLG--LNPGLKLNAVQQEKMHAIARQMGIDNLMARLP--- 127 ++ ++N F + ++AQN+ + L G A+ H + Q +N L Sbjct: 343 ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGL--FHEVDEQRTAENQRELLALKC 400 Query: 128 -------GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQK 180 ELSGG +Q+V +++ L +++ DEP +D + E+ ++ K Sbjct: 401 HSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGK 460 Query: 181 MTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTN 215 + +LMVS + + + R V +GR+ Q +TN Sbjct: 461 V-ILMVSSELPEIITVCDRIAVFCEGRLT-QILTN 493 >b1290 putative ATP-binding protein of peptide transport system (sapF) {Escherichia coli K12-MG1655} Length = 268 Score = 83.6 bits (205), Expect = 1e-017 Identities = 59/207 (28%), Positives = 115/207 (55%), Gaps = 16/207 (7%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTT-----TPPSRRPV 73 S T+ G+ +AI+G +G+GKSTL ++AG + P SG L ID DH + S+R + Sbjct: 34 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID--DHPLHFGDYSFRSQR-I 90 Query: 74 SMLFQENNLFSHLTVAQNIGLGLNPGLKLNA-----VQQEKMHAIARQMGI-DNLMARLP 127 M+FQ+ + + L Q I L+ L+LN +++++ R +G+ + ++ P Sbjct: 91 RMIFQDPS--TSLNPRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYP 148 Query: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 L+ GQ+QR+ LAR L+ +++ DE ++LD ++R +++ L+ ++Q ++ + V+ Sbjct: 149 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVT 208 Query: 188 HSVEDAARIATRSVVVADGRIAWQGMT 214 + I+ + +V+ G + +G T Sbjct: 209 QHIGMMKHISDQVLVMHQGEVVERGST 235 >b1900 ATP-binding component of high-affinity L-arabinose transport system (araG) {Escherichia coli K12-MG1655} Length = 504 Score = 82.8 bits (203), Expect = 2e-017 Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 7/189 (3%) Query: 25 GEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHT---TTPPSRRPVSMLFQENN 81 G+ A++G +GAGKSTLL +++G P +G++ I+G + + TT V++++QE + Sbjct: 33 GQVHALMGENGAGKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELH 92 Query: 82 LFSHLTVAQNIGLGLNP---GLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRV 138 L +TVA+NI LG P G+ ++ + + +G+D LS GQ Q V Sbjct: 93 LVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMV 152 Query: 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIAT 198 +A+ L R I+ DEP S+L A + L V +++ +L VSH +E+ ++ Sbjct: 153 EIAKALARNAKIIAFDEPTSSLS-AREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSD 211 Query: 199 RSVVVADGR 207 V DGR Sbjct: 212 AITVFKDGR 220 Score = 58.5 bits (140), Expect = 4e-010 Identities = 55/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVS--ML 76 SL V GE V + G GAG+S L+ + G +G + ID PS + ML Sbjct: 276 SLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMML 335 Query: 77 FQENNLFSHL----TVAQNIGLG-----------LNPGLKLNAVQQEKMHAIARQMGIDN 121 E+ + +V NI + +N G + N + G + Sbjct: 336 CPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPGAEQ 395 Query: 122 LMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKM 181 L+ L SGG +Q+ L R L E ++LLDEP +D + E+ ++ + Q + Sbjct: 396 LIMNL----SGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVI-YALAAQGV 450 Query: 182 TLLMVSHSVEDAARIATRSVVVADGRIA 209 +L S + + +A R VV+ +G IA Sbjct: 451 AVLFASSDLPEVLGVADRIVVMREGEIA 478 >b3455 ATP-binding component of high-affinity branched-chain amino acid transport system (livG) {Escherichia coli K12-MG1655} Length = 255 Score = 82.4 bits (202), Expect = 2e-017 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 18/199 (9%) Query: 26 EQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPP---SRRPVSMLFQENNL 82 E V+++GP+GAGK+T+ N + GF P G + + P +R V FQ L Sbjct: 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRL 91 Query: 83 FSHLTVAQNIGL--------GLNPGL-KLNAVQQEKMHAIAR------QMGIDNLMARLP 127 F +TV +N+ + GL GL K + ++ + A+ R ++G+ R Sbjct: 92 FREMTVIENLLVAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQA 151 Query: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 L+ G ++R+ +ARC+V + IL+LDEP + L+P +E+ L++ T+L++ Sbjct: 152 SNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIE 211 Query: 188 HSVEDAARIATRSVVVADG 206 H ++ I+ R VV G Sbjct: 212 HDMKLVMGISDRIYVVNQG 230 >b0490 putative ATP-binding component of a transport system (ybbL) {Escherichia coli K12-MG1655} Length = 225 Score = 82.4 bits (202), Expect = 2e-017 Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 18/183 (9%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS--RRPVSML 76 + ++ GE I GPSG GKSTLL ++A ++P SG L +G D +T P R+ VS Sbjct: 27 NFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYC 86 Query: 77 FQENNLFSHLTVAQNI-------GLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGE 129 Q LF TV N+ +P + L+ +++ + D+++ + E Sbjct: 87 AQTPTLFGD-TVYDNLIFPWQIRNRQPDPAIFLDFLERFALP--------DSILTKNIAE 137 Query: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHS 189 LSGG++QR++L R L +LLLDE SALD + + + ++ ++Q + +L V+H Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHD 197 Query: 190 VED 192 ++ Sbjct: 198 KDE 200 >b3749 ATP-binding component of D-ribose high-affinity transport system (rbsA) {Escherichia coli K12-MG1655} Length = 501 Score = 82.0 bits (201), Expect = 3e-017 Identities = 61/201 (30%), Positives = 99/201 (49%), Gaps = 18/201 (8%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPP---SRRPVSM 75 +L V G +A++G +GAGKST++ ++ G T +G L G + T T P + + Sbjct: 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGKETTFTGPKSSQEAGIGI 83 Query: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMA---------RL 126 + QE NL LT+A+NI LG + + + M+A A D L+A +L Sbjct: 84 IHQELNLIPQLTIAENIFLGREFVNRFGKIDWKTMYAEA-----DKLLAKLNLRFKSDKL 138 Query: 127 PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMV 186 G+LS G +Q V +A+ L E ++++DEP AL E L V + Q ++ + Sbjct: 139 VGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDT-ETESLFRVIRELKSQGRGIVYI 197 Query: 187 SHSVEDAARIATRSVVVADGR 207 SH +++ I V DG+ Sbjct: 198 SHRMKEIFEICDDVTVFRDGQ 218 Score = 72.0 bits (175), Expect = 3e-014 Identities = 51/204 (25%), Positives = 104/204 (50%), Gaps = 14/204 (6%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLF- 77 S T+ +GE + + G GAG++ L+ ++ G L SG +T+DG + T P + + Sbjct: 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331 Query: 78 -----QENNLFSHLTVAQNIGL------GLNPGLKLNAVQQEKMHAIARQMGIDN-LMAR 125 + + L ++V +N+ L G +A +Q+ + R + M + Sbjct: 332 ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTPSMEQ 391 Query: 126 LPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLM 185 G LSGG +Q+VA+AR L+ +L+LDEP +D ++E+ L++ + +++++ Sbjct: 392 AIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN-QFKADGLSIIL 450 Query: 186 VSHSVEDAARIATRSVVVADGRIA 209 VS + + ++ R +V+ +G ++ Sbjct: 451 VSSEMPEVLGMSDRIIVMHEGHLS 474 >b2211 putative ATP-binding component of a transport system (yojI) {Escherichia coli K12-MG1655} Length = 547 Score = 81.3 bits (199), Expect = 5e-017 Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 15/194 (7%) Query: 2 LKLTDITWLYHHLPMR---FSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTI 58 L+L ++T+ Y +LT++RGE + ++G +G+GKSTL L+ G P SG + + Sbjct: 323 LELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 Query: 59 DGVDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKM-HAIAR 115 DG + P R+ S +F + LF L + G NP L + Q KM H + Sbjct: 383 DGKPVSGEQPEDYRKLFSAVFTDVWLFDQLLGPE--GKPANPQLVEKWLAQLKMAHKLEL 440 Query: 116 QMG-IDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVST 174 G I NL +LS GQ++RVAL L E+ I+LLDE + DP R+E ++ Sbjct: 441 SNGRIVNL------KLSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLP 494 Query: 175 SCQQQKMTLLMVSH 188 Q+ T+ +SH Sbjct: 495 LMQEMGKTIFAISH 508 >b3486 putative ATP-binding component of a transport system, fragment 1 (yhiH) {Escherichia coli K12-MG1655} Length = 894 Score = 79.7 bits (195), Expect = 2e-016 Identities = 58/197 (29%), Positives = 99/197 (50%), Gaps = 4/197 (2%) Query: 22 VERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG--VDHTTTPPSRRPVSMLFQE 79 + RGE LG +G GKST + ++ G L + G + G VD +RR V + Q Sbjct: 282 IPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAWLFGQPVDPKDID-TRRRVGYMSQA 340 Query: 80 NNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVA 139 +L++ LTV QN+ L A ++ ++ + ++++ LP L G RQR++ Sbjct: 341 FSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSERFKLNDVEDILPESLPLGIRQRLS 400 Query: 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATR 199 LA ++ +L+LDEP S +DP R L+ +Q K+T+ + +H + +A R Sbjct: 401 LAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHFMNEAERCDRI 460 Query: 200 SVVVADGRIAWQGMTNE 216 S++ A G++ G E Sbjct: 461 SLMHA-GKVLASGTPQE 476 Score = 73.9 bits (180), Expect = 8e-015 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 8/175 (4%) Query: 28 VAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ------ENN 81 V ++GP G GKS+LL+LI+G G + + G D P RR V N Sbjct: 24 VGLIGPDGVGKSSLLSLISGARVIEQGNVMVLGGD-MRDPKHRRDVCPRIAWMPQGLGKN 82 Query: 82 LFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALA 141 L+ L+V +N+ A ++ +++ + G+ R G+LSGG +Q++ L Sbjct: 83 LYHTLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLC 142 Query: 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQ-KMTLLMVSHSVEDAAR 195 L+ + +L+LDEP + +DP R + L+ + Q+Q M++L+ + +E+A R Sbjct: 143 CALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSVLVATAYMEEAER 197 >b0829 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 612 Score = 79.7 bits (195), Expect = 2e-016 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 22/220 (10%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTID------------GVDHTTT 66 S +++RGE +AI+G SG+GKS + L A G + D + Sbjct: 25 SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNA 84 Query: 67 PPSRR----PVSMLFQE-----NNLFS-HLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQ 116 R ++M+FQE N +F+ +A++I L N + V+ ++M R Sbjct: 85 AQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRI 144 Query: 117 MGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSC 176 +++R P +LSGG RQRV +A L +L+ DEP +ALD ++ ++L L+ Sbjct: 145 PEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQ 204 Query: 177 QQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 ++ M ++ ++H + A IA R +V+ G G + Sbjct: 205 KEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQ 244 Score = 75.9 bits (185), Expect = 2e-015 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 13/207 (6%) Query: 13 HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS--- 69 H + S + GE ++++G SG+GKST + + G + +G T P Sbjct: 327 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ 386 Query: 70 --RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHA-----IARQMGIDNL 122 RR + +FQ+ ++ L Q IG + L+++ + K A + ++G+ Sbjct: 387 ALRRDIQFIFQDP--YASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPE 444 Query: 123 MA-RLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKM 181 A R P E SGGQRQR+ +AR L +++ DE SALD ++R +++ L+ + + Sbjct: 445 HAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGI 504 Query: 182 TLLMVSHSVEDAARIATRSVVVADGRI 208 L +SH + RI+ R V+ G+I Sbjct: 505 AYLFISHDMAVVERISHRVAVMYLGQI 531 >b3479 ATP-binding protein of nickel transport system (nikD) {Escherichia coli K12-MG1655} Length = 254 Score = 78.6 bits (192), Expect = 3e-016 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 31/213 (14%) Query: 19 SLTVERGEQVAILGPSGAGKS----TLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVS 74 SLT++RG +A++G SG+GKS L ++ + +G + DG +P + R + Sbjct: 23 SLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADG--KPVSPCALRGIK 80 Query: 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQ------------MGIDN- 121 + T+ QN NP ++ +E A+ + +G++N Sbjct: 81 IA----------TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENA 130 Query: 122 --LMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQ 179 ++ P E+SGG QR+ +A ++ E P ++ DEP + LD + +L L+ + Q+Q Sbjct: 131 ARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQ 190 Query: 180 KMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 +L+V+H + AR+A V++DG+I QG Sbjct: 191 APGMLLVTHDMGVVARLADDVAVMSDGKIVEQG 223 >b0448 ATP-binding component of a transport system (mdlA) {Escherichia coli K12-MG1655} Length = 590 Score = 78.6 bits (192), Expect = 3e-016 Identities = 70/207 (33%), Positives = 107/207 (51%), Gaps = 23/207 (11%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS--RRPVSML 76 + ++ G+ + I GP+G+GKSTLL+LI + G + + T R ++++ Sbjct: 356 NFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVV 415 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLP-------GE 129 Q LFS TVA NI LG NA QQE H +AR + + + RLP GE Sbjct: 416 SQTPFLFSD-TVANNIALGCP-----NATQQEIEH-VARLASVHDDILRLPQGYDTEVGE 468 Query: 130 ----LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLM 185 LSGGQ+QR+++AR L+ IL+LD+ SA+D R E L + Q T+++ Sbjct: 469 RGVMLSGGQKQRISIARALLVNAEILILDDALSAVDG--RTEHQILHNLRQWGQGRTVII 526 Query: 186 VSHSVEDAARIATRSVVVADGRIAWQG 212 +H + A A+ +V+ G IA +G Sbjct: 527 SAHRL-SALTEASEIIVMQHGHIAQRG 552 >b0127 putative ATP-binding component of a transport system (yadG) {Escherichia coli K12-MG1655} Length = 308 Score = 78.2 bits (191), Expect = 4e-016 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 8/193 (4%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD-HTTTPPSRRPVSMLFQ 78 L VE G+ A+LGP+GAGKST + +I+ + SG +++ G D ++R + ++ Q Sbjct: 26 LQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQ 85 Query: 79 ENNLFSHLTVAQ---NIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQR 135 E N TV Q N K ++ EK G N AR+ LSGG + Sbjct: 86 EFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARM---LSGGMK 142 Query: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAAR 195 +R+ +AR L+ E +L+LDEP + +D LR+ M + + T+++ +H +E+A Sbjct: 143 RRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK-DLNDKGTTIILTTHYLEEAEM 201 Query: 196 IATRSVVVADGRI 208 + ++ G + Sbjct: 202 LCRNIGIIQHGEL 214 >b1709 ATP-binding component of vitamin B12 transport system (btuD) {Escherichia coli K12-MG1655} Length = 249 Score = 77.4 bits (189), Expect = 8e-016 Identities = 62/219 (28%), Positives = 105/219 (47%), Gaps = 46/219 (21%) Query: 22 VERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG-----------------VDHT 64 V GE + ++GP+GAGKSTLL +AG +T G++ G + Sbjct: 23 VRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQ 81 Query: 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMA 124 TPP PV + +LT+ Q+ + + E ++ +A + +D+ + Sbjct: 82 QTPPFATPV---------WHYLTLHQH-----------DKTRTELLNDVAGALALDDKLG 121 Query: 125 RLPGELSGGQRQRVALARCLVREQP-------ILLLDEPFSALDPALRQEMLTLVSTSCQ 177 R +LSGG+ QRV LA +++ P +LLLDEP ++LD A + + ++S C Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC- 180 Query: 178 QQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNE 216 QQ + ++M SH + R A R+ ++ G++ G E Sbjct: 181 QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREE 219 >b3541 putative ATP-binding component of dipeptide transport system (dppD) {Escherichia coli K12-MG1655} Length = 327 Score = 77.0 bits (188), Expect = 1e-015 Identities = 57/214 (26%), Positives = 107/214 (50%), Gaps = 20/214 (9%) Query: 17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLT----PASGALTIDGVDHTTTPPSRR- 71 R S +V++GE V I+G SG+GKS I G + + L +G D R Sbjct: 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERR 84 Query: 72 -----PVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN-----AVQQEKMHAIARQMGIDN 121 V+M+FQ+ + L +G + +K++ + ++++ + Q+GI + Sbjct: 85 NLVGAEVAMIFQDP--MTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPD 142 Query: 122 LMARL---PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQ 178 +RL P +LSGG QRV +A + +L+ DEP +ALD ++ +++ L+ Q+ Sbjct: 143 PASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK 202 Query: 179 QKMTLLMVSHSVEDAARIATRSVVVADGRIAWQG 212 + M L++++H + A A + +V+ G++ G Sbjct: 203 ENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 >b3725 ATP-binding component of high-affinity phosphate-specific transport system (pstB) {Escherichia coli K12-MG1655} Length = 257 Score = 75.5 bits (184), Expect = 3e-015 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 17/234 (7%) Query: 13 HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGF--LTP---ASGALTIDGVDHTTTP 67 H +L + + + A +GPSG GKSTLL L P A G + +DG + T Sbjct: 24 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNS 83 Query: 68 PS----RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLN-AVQQEKMHAIARQMGIDN- 121 R V M+FQ+ F +++ NI G+ KL+ A E++ + + N Sbjct: 84 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNE 142 Query: 122 ---LMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQ 178 + + LSGGQ+QR+ +AR + +LLLDEP SALDP + L++ + Sbjct: 143 TKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE--LK 200 Query: 179 QKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNEXXXXXXXXXXXXXITG 232 Q T+++V+H+++ AAR + + + G + T++ ITG Sbjct: 201 QDYTVVIVTHNMQQAARCSDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITG 254 >b2149 ATP-binding component of methyl-galactoside transport and galactose taxis (mglA) {Escherichia coli K12-MG1655} Length = 506 Score = 73.9 bits (180), Expect = 8e-015 Identities = 54/186 (29%), Positives = 91/186 (48%), Gaps = 9/186 (4%) Query: 29 AILGPSGAGKSTLLNLIAGFLTPASGALTIDGVD---HTTTPPSRRPVSMLFQENNLFSH 85 A++G +GAGKSTLL + G SG + G + H+ +SM+ QE NL Sbjct: 43 ALMGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ 102 Query: 86 LTVAQNIGLGLNPGLKLNAVQQEKMH----AIARQMGIDNLMARLPGELSGGQRQRVALA 141 +V N+ LG P K V Q+KM+ AI ++ ID G LS Q Q + +A Sbjct: 103 RSVMDNMWLGRYP-TKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIA 161 Query: 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSV 201 + I+++DEP S+L + T++ +++ ++ +SH +E+ ++ Sbjct: 162 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTII-RKLKERGCGIVYISHKMEEIFQLCDEVT 220 Query: 202 VVADGR 207 V+ DG+ Sbjct: 221 VLRDGQ 226 Score = 61.2 bits (147), Expect = 6e-011 Identities = 50/223 (22%), Positives = 109/223 (48%), Gaps = 16/223 (7%) Query: 1 MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG 60 +L++ ++T L S + +GE + I G GA ++ ++ + G ++G +T+ G Sbjct: 265 ILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 324 Query: 61 V---DHTTTPPSRRPVSMLFQENN---LFSHLTVAQN--IGLGLNPGLKLNAVQQEKMHA 112 +H +++ +E ++++L + N I N K+ + +M + Sbjct: 325 KQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS 384 Query: 113 IARQMGIDNLMARLPGE------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 Q ID++ + PG LSGG +Q+V + R L+ + IL+LDEP +D + Sbjct: 385 DT-QWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKF 443 Query: 167 EMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIA 209 E+ L++ ++ K ++++S + + I R +V+++G ++ Sbjct: 444 EIYQLIAELAKKGK-GIIIISSEMPELLGITDRILVMSNGLVS 485 >b4228 putative ATP-binding component of a transport system (ytfR) {Escherichia coli K12-MG1655} Length = 417 Score = 73.2 bits (178), Expect = 1e-014 Identities = 49/192 (25%), Positives = 95/192 (49%), Gaps = 7/192 (3%) Query: 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG---VDHTTTPPSRRPVSMLF 77 ++ RGE +A+LG +GAGKSTL+ + G G + ++G T + + ++ Sbjct: 31 SLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAISPKNTAHAQQLGIGTVY 90 Query: 78 QENNLFSHLTVAQNIGLGLNP---GLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQ 134 QE NL +++VA N+ +G P GL +++ + G + S Sbjct: 91 QEVNLLPNMSVADNLFIGREPKRFGLLRRKEMEKRATELMASYGFSLDVREPLNRFSVAM 150 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 +Q VA+ R + +L+LDEP ++LD E+L + + + ++L+ V+H ++ Sbjct: 151 QQIVAICRAIDLSAKVLILDEPTASLD-TQEVELLFDLMRQLRDRGVSLIFVTHFLDQVY 209 Query: 195 RIATRSVVVADG 206 +++ R V+ +G Sbjct: 210 QVSDRITVLRNG 221 >b1484 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 328 Score = 73.2 bits (178), Expect = 1e-014 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 27/224 (12%) Query: 13 HLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPAS-----GALTIDGVDHTTTP 67 H SL + RGE V ++G SG+GKS LI L S G +++ G D Sbjct: 23 HALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAR 82 Query: 68 PSR------RPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDN 121 + V+M+FQE + L + IGL + ++ + Q AR ID Sbjct: 83 EKQLRQWRGARVAMIFQEP--MTALNPTRRIGLQMMDVIRHH---QPISRREARAKAIDL 137 Query: 122 L-----------MARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLT 170 L M+R P ELSGG RQRV +A E +++ DEP +ALD ++ ++L Sbjct: 138 LEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLR 197 Query: 171 LVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMT 214 L+ + +L +SH + +++ V+ G + G+T Sbjct: 198 LLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVT 241 >b1858 putative ATP-binding component of a transport system (yebM) {Escherichia coli K12-MG1655} Length = 251 Score = 72.8 bits (177), Expect = 2e-014 Identities = 51/172 (29%), Positives = 89/172 (51%), Gaps = 14/172 (8%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 SL ++ G+ + +LGP+GAGKSTL+ ++ G +TP G + +G + + + Q Sbjct: 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNG---------KLRIGYVPQ 74 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRV 138 + L + L + N L L PG +E + +++ +L+ +LSGG+ QRV Sbjct: 75 KLYLDTTLPLTVNRFLRLRPG-----THKEDILPALKRVQAGHLINAPMQKLSGGETQRV 129 Query: 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSV 190 LAR L+ +L+LDEP +D + + L+ ++ +LMVSH + Sbjct: 130 LLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDL 181 >b0760 ATP-binding component of molybdate transport system (modF) {Escherichia coli K12-MG1655} Length = 490 Score = 71.2 bits (173), Expect = 5e-014 Identities = 65/200 (32%), Positives = 94/200 (47%), Gaps = 12/200 (6%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPA-SGALTIDGVDH---TTTPPSRRPVS 74 S V GE I+GP+GAGKSTLL+L+ G S LT+ G T ++ + Sbjct: 280 SWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 Query: 75 MLFQENNL-FSHLTVAQNIGL-GLNPGLKLNAVQQEKMHAIARQ----MGIDNLMARLP- 127 + +L + T +N+ L G + + ++ + +Q +GID A P Sbjct: 340 YVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPF 399 Query: 128 GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVS 187 LS GQ++ + R LV+ +L+LDEP LDP RQ + V + + LL VS Sbjct: 400 HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVS 459 Query: 188 HSVEDA-ARIATRSVVVADG 206 H EDA A I R V DG Sbjct: 460 HHAEDAPACITHRLEFVPDG 479 Score = 66.2 bits (160), Expect = 2e-012 Identities = 59/206 (28%), Positives = 97/206 (47%), Gaps = 17/206 (8%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALT--IDGVDHTTTPPSRRPVSMLF 77 LT+ G+ A +G +G+GKS L +AG L G + + ++ VS + Sbjct: 24 LTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEW 83 Query: 78 QENNLFSHLTVAQNIGLGLNPGLKLNA--VQQEKMHA-----IARQMGIDNLMARLPGEL 130 Q NN +G G + + A +Q E A +A+Q GI L+ R L Sbjct: 84 QRNN-------TDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYL 136 Query: 131 SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSV 190 S G+ ++ L + L+ E +L+LDEPF LD A RQ++ ++ S Q +TL++V + Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLA-SLHQSGITLVLVLNRF 195 Query: 191 EDAARIATRSVVVADGRIAWQGMTNE 216 ++ + V+AD +A G E Sbjct: 196 DEIPEFVQFAGVLADCTLAETGAKEE 221 >b1246 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppD) {Escherichia coli K12-MG1655} Length = 337 Score = 69.3 bits (168), Expect = 2e-013 Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 19/206 (9%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTP---ASGALTIDG------VDHTTTPPS 69 + ++ GE + I+G SG+GKS + G L G+ T +G +H Sbjct: 43 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR 102 Query: 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL--NAVQQEKMHAIARQMGIDNL----- 122 +SM+FQ+ + L +G L L L N + E R + + Sbjct: 103 AEQISMIFQDP--MTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK 160 Query: 123 -MARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKM 181 M P E SGG RQRV +A L+ +L+ DEP +ALD ++ +++TL++ ++ Sbjct: 161 RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT 220 Query: 182 TLLMVSHSVEDAARIATRSVVVADGR 207 ++M++H + A I + +V+ GR Sbjct: 221 AIIMITHDLVVVAGICDKVLVMYAGR 246 >b3567 putative ATP-binding protein of xylose transport system (xylG) {Escherichia coli K12-MG1655} Length = 513 Score = 68.6 bits (166), Expect = 4e-013 Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 9/196 (4%) Query: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPAS--GALTIDGVDHTTT---PPSRRPVS 74 L + GE V++ G +G+GKSTL+ ++ G S G + G + + R+ ++ Sbjct: 25 LRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIA 84 Query: 75 MLFQENNLFSHLTVAQNIGLG---LNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELS 131 ++ QE L LTV +NI LG + G+ + + + Q+ + G+L Sbjct: 85 IIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLG 144 Query: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVE 191 GQ+Q V +A+ L ++ +L+LDEP ++L +L ++ QQ + + +SH + Sbjct: 145 LGQQQLVEIAKALNKQVRLLILDEPTASLTEQETSILLDII-RDLQQHGIACIYISHKLN 203 Query: 192 DAARIATRSVVVADGR 207 + I+ V+ DG+ Sbjct: 204 EVKAISDTICVIRDGQ 219 Score = 58.2 bits (139), Expect = 5e-010 Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 33/213 (15%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPA--SGALTIDG--VD-HTTTPPSRRPV 73 S +++RGE + I G GAG++ + + G + P G + IDG VD + + Sbjct: 281 SFSLKRGEILGIAGLVGAGRTETIQCLFG-VWPGQWEGKIYIDGKQVDIRNCQQAIAQGI 339 Query: 74 SMLFQE---NNLFSHLTVAQNIGLG----LNPGLK-----------LNAVQQEKMHAIAR 115 +M+ ++ + + + V +NI L G+ L ++QQ K+ + Sbjct: 340 AMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQLKVKTSSP 399 Query: 116 QMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTS 175 + I G LSGG +Q+ LARCL+ IL+LDEP +D + E+ L++ Sbjct: 400 DLAI--------GRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLIN-Q 450 Query: 176 CQQQKMTLLMVSHSVEDAARIATRSVVVADGRI 208 QQ + ++++S + + ++ R +V+ +G++ Sbjct: 451 LVQQGIAVIVISSELPEVLGLSDRVLVMHEGKL 483 >b4097 ATP-binding component of phosphonate transport (phnK) {Escherichia coli K12-MG1655} Length = 252 Score = 67.0 bits (162), Expect = 1e-012 Identities = 52/201 (25%), Positives = 95/201 (47%), Gaps = 10/201 (4%) Query: 25 GEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQENNLFS 84 GE + I+G SG+GK+T L I+ LTP G + + + R + + + Sbjct: 31 GEVLGIVGESGSGKTTQLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQ 90 Query: 85 HLT--VAQNIGLGLNPGLKLNAVQQEKMHAI--ARQMGID------NLMARLPGELSGGQ 134 H + + + G N G +L A I Q ++ N + LP SGG Sbjct: 91 HPLDGLRRQVSAGGNIGERLMATGARHYGDIRATAQKWLEEVEIPANRIDDLPTTFSGGM 150 Query: 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAA 194 +QR+ +AR LV ++ +DEP LD +++ +L L+ + + +++V+H + A Sbjct: 151 QQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVTHDLGVAR 210 Query: 195 RIATRSVVVADGRIAWQGMTN 215 +A R +V+ G++ G+T+ Sbjct: 211 LLADRLLVMKQGQVVESGLTD 231 >b0449 putative ATP-binding component of a transport system (mdlB) {Escherichia coli K12-MG1655} Length = 593 Score = 65.5 bits (158), Expect = 3e-012 Identities = 50/175 (28%), Positives = 94/175 (53%), Gaps = 7/175 (4%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPS--RRPVSML 76 +L+V VA++G +G+GKSTL +L+ G+ G + +DG ++ S R+ V+M+ Sbjct: 361 NLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSALRQGVAMV 420 Query: 77 FQENNLFSHLTVAQ-NIGLGLNPGLKLNAVQQEKMHAIARQM--GIDNLMARLPGELSGG 133 Q+ + + +A +G ++ A++ ++ +AR M GI + LS G Sbjct: 421 QQDPVVLADTFLANVTLGRDISEERVWQALETVQLAELARSMSDGIYTPLGEQGNNLSVG 480 Query: 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSH 188 Q+Q +ALAR LV IL+LDE +++D Q + + + ++ TL++++H Sbjct: 481 QKQLLALARVLVETPQILILDEATASIDSGTEQAIQH--ALAAVREHTTLVVIAH 533 >b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia coli K12-MG1655} Length = 205 Score = 64.7 bits (156), Expect = 5e-012 Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 30/203 (14%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 S T+ GE V I G +GAGK+TLL L+ G P +G + G V + Sbjct: 21 SFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQG-------QPLHQVRDSYH 73 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIAR------------QMGIDNLMARL 126 +N L+ +G PG+K E +H R Q G+ Sbjct: 74 QNLLW----------IGHQPGIKTRLTALENLHFYHRDGDTAQCLEALAQAGLAGFEDIP 123 Query: 127 PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMV 186 +LS GQ++RVALAR + + +LDEPF+A+D + LT +Q +++ Sbjct: 124 VNQLSAGQQRRVALARLWLTRATLWILDEPFTAID-VNGVDRLTQRMAQHTEQGGIVILT 182 Query: 187 SHSVEDAARIATRSVVVADGRIA 209 +H + A R + + R A Sbjct: 183 THQPLNVAESKIRRISLTQTRAA 205 >b4096 ATP-binding component of phosphonate transport (phnL) {Escherichia coli K12-MG1655} Length = 226 Score = 63.9 bits (154), Expect = 9e-012 Identities = 53/156 (33%), Positives = 72/156 (46%), Gaps = 11/156 (7%) Query: 17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDH---TTTPPSRRPV 73 R SLTV GE V + G SG+GKSTLL + P G + I D T P+R+ V Sbjct: 26 RASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARKVV 85 Query: 74 SMLFQENNLFSH-LTVAQNIGLG-------LNPGLKLNAVQQEKMHAIARQMGIDNLMAR 125 + S L V I L+ G+ A + + R + L Sbjct: 86 EIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLWHL 145 Query: 126 LPGELSGGQRQRVALARCLVREQPILLLDEPFSALD 161 P SGG++QRV +AR + + PILLLDEP ++LD Sbjct: 146 APSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 181 >b4391 putative ATP-binding component of a transport system (yjjK) {Escherichia coli K12-MG1655} Length = 555 Score = 63.2 bits (152), Expect = 1e-011 Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 17/182 (9%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQ 78 S ++ +G V I+GP+GAGKSTL +I+G P SG +T+ + R Sbjct: 343 SFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVDQFR------- 395 Query: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIAR--QMGIDNLMARLPGELSGGQRQ 136 +++ + TV + + GL+ +K+ + + R G+D + GELSGG+R Sbjct: 396 -DSMDNSKTVWEEVSGGLDI-MKIGNTEMPSRAYVGRFNFKGVD--QGKRVGELSGGERG 451 Query: 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARI 196 R+ LA+ L +LLLDEP + LD E L + + + +++SH RI Sbjct: 452 RLHLAKLLQVGGNMLLLDEPTNDLD----IETLRALENALLEFPGCAMVISHDRWFLDRI 507 Query: 197 AT 198 AT Sbjct: 508 AT 509 >b1291 putative ATP-binding protein of peptide transport system (sapD) {Escherichia coli K12-MG1655} Length = 330 Score = 58.9 bits (141), Expect = 3e-010 Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 25/214 (11%) Query: 17 RFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTP----ASGALTIDGVDHTTTPPSRRP 72 R S+T+ GE ++G SG+GKS + I G + + D +D R Sbjct: 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERR 84 Query: 73 ------VSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQ----------QEKMHAIARQ 116 VSM+FQE S L ++ +G L + + + + + + Sbjct: 85 KLVGHNVSMIFQEPQ--SCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHR 142 Query: 117 MGIDN---LMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVS 173 +GI + M P EL+ G+ Q+V +A L + +L+ DEP ++++P + ++ L++ Sbjct: 143 VGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLT 202 Query: 174 TSCQQQKMTLLMVSHSVEDAARIATRSVVVADGR 207 Q T+L++SH ++ ++ A + V+ G+ Sbjct: 203 RLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236 >b3352 putative ATP-binding component of a transport system (yheS) {Escherichia coli K12-MG1655} Length = 637 Score = 53.9 bits (128), Expect = 9e-009 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 22/186 (11%) Query: 21 TVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDG------VDHTTTPPSRRPVS 74 T+ G++V ++G +G GKSTLL L+ ++ G+ T G V+ T + + Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALE 82 Query: 75 MLFQENNLFSHLTVAQNIGLGLNPGL-------KLNAVQ----QEKMHAIARQMGIDNLM 123 + + + L + N G KL+A+ + + ++ +G N Sbjct: 83 YVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQ 142 Query: 124 ARLP-GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMT 182 P + SGG R R+ LA+ L+ +LLLDEP + LD + + + + + T Sbjct: 143 LERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD----LDAVIWLEKWLKSYQGT 198 Query: 183 LLMVSH 188 L+++SH Sbjct: 199 LILISH 204 >b1682 putative ATP-binding component of a transport system (ynhD) {Escherichia coli K12-MG1655} Length = 248 Score = 45.1 bits (105), Expect = 4e-006 Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 21/187 (11%) Query: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAG--FLTPASGALTIDGVDHTTTPPSRRPVSML 76 SL V GE AI+GP+G+GKSTL +AG G + G D P R + Sbjct: 21 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 80 Query: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLM------ARLPGEL 130 F F + + LNAV+ + + +LM ++P +L Sbjct: 81 FM---AFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL 137 Query: 131 ---------SGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKM 181 SGG+++R + + V E + +LDE S LD + + V+ S + K Sbjct: 138 LTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN-SLRDGKR 196 Query: 182 TLLMVSH 188 + ++V+H Sbjct: 197 SFIIVTH 203 Query= Z0076 putative transport system permease protein (yabK) {Escherichia coli O157:H7 EDL933} (536 letters) Score E Sequences producing significant alignments: (bits) Value b0067 putative transport system permease protein (yabK) {Escheri... 948 0.0 b0764 molybdate transport permease protein (modB) {Escherichia c... 71 2e-013 b2424 sulfate, thiosulfate transport system permease T protein (... 64 2e-011 b1124 spermidine/putrescine transport system permease (potC) {Es... 49 1e-006 b1443 putative transport system permease protein {Escherichia co... 46 5e-006 >b0067 putative transport system permease protein (yabK) {Escherichia coli K12-MG1655} Length = 536 Score = 948 bits (2450), Expect = 0.0 Identities = 479/536 (89%), Positives = 485/536 (90%) Query: 1 MATRRQPLIPGWLIPGXXXXXXXXXXXXXXXXXXWWNAPQGDWSAVWQDSYLWHVVRFSF 60 MATRRQPLIPGWLIPG WWNAPQ DW AVWQDSYLWHVVRFSF Sbjct: 1 MATRRQPLIPGWLIPGVSATTLVVAVALAAFLALWWNAPQDDWVAVWQDSYLWHVVRFSF 60 Query: 61 WQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGW 120 WQAFLSALLSV+PAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGW Sbjct: 61 WQAFLSALLSVIPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGW 120 Query: 121 LASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRG 180 LA+LCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMR Sbjct: 121 LATLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRS 180 Query: 181 WHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDP 240 WHFFRFVEWPWLRRQIPPV ALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDP Sbjct: 181 WHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDP 240 Query: 241 ARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTMXXXXXXX 300 ARAAMLAL+QMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDT+ Sbjct: 241 ARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALL 300 Query: 301 XXXXXXXXXXVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELR 360 VDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELR Sbjct: 301 LLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELR 360 Query: 361 ARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYA 420 ARQKMLAGQ LEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYA Sbjct: 361 ARQKMLAGQVLEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYA 420 Query: 421 LKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVV 480 LKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVV Sbjct: 421 LKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVV 480 Query: 481 ALFGNDDFRTLPFYLYQQIGSYRSQDGAVTAXXXXXXXXXXXSVIEKIPGRNVKTD 536 ALFGNDDFRTLPFYLYQQIGSYRSQDGAVTA +VIEK+PGRNVKTD Sbjct: 481 ALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD 536 >b0764 molybdate transport permease protein (modB) {Escherichia coli K12-MG1655} Length = 229 Score = 70.9 bits (172), Expect = 2e-013 Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 6/217 (2%) Query: 53 WHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGIL 112 W V S + L+ L S+ IF A L R FPG+ L + + L+LP +V + +L Sbjct: 8 WQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLL 67 Query: 113 SVYGRQGWLAS-LCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQ 171 GR+G++ L G+ + FS +G +LA + P+ R + ALE + + Q Sbjct: 68 VSMGRRGFIGERLYDWFGITFAFS---WRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQ 124 Query: 172 LAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASF-ATVLSLGGGPQAT-TIELA 229 A LG W F + P I T L F F AT+ + P T TI A Sbjct: 125 AARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSA 184 Query: 230 IYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSK 266 +Y + + AA L +I + + +L+S+ L++ Sbjct: 185 MYTLIQTPGGESGAARLCIISIALAMISLLISEWLAR 221 >b2424 sulfate, thiosulfate transport system permease T protein (cysU) {Escherichia coli K12-MG1655} Length = 277 Score = 63.9 bits (154), Expect = 2e-011 Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 10/216 (4%) Query: 40 QGDWSAVWQDSYLWHVV---RFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLC 96 Q W+ W+ VV + + AF++++ + V + +A L R RFPGR L L Sbjct: 41 QMSWAQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALM 100 Query: 97 AMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASR 156 + LP VA + S++ G+ ++ T Y GI +A F ++P R Sbjct: 101 DLPFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVT---YTWLGIAVAMAFTSIPFVVR 157 Query: 157 LLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLS 216 + LE + E + A LG W F V P L + AL F F V+ Sbjct: 158 TVQPVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIF 217 Query: 217 LGGGP--QATTIELAIYQAL-SYDYDPARAAMLALI 249 + G + L I+ L +DY PA +A+ ++I Sbjct: 218 IAGNIAWKTEVTSLMIFVRLQEFDY-PAASAIASVI 252 Score = 48.5 bits (114), Expect = 1e-006 Identities = 42/179 (23%), Positives = 79/179 (44%), Gaps = 9/179 (5%) Query: 320 EVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLIL 379 EV+ P + A +L A A + V +++ W R + L +++ L Sbjct: 49 EVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDLPFALPT 108 Query: 380 AMPGIVLAT-----GFF--LLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDIT 432 A+ G+ LA+ GF+ L I + + GI + A +IP+ ++ ++ + ++ Sbjct: 109 AVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAV-AMAFTSIPFVVRTVQPVLEELG 167 Query: 433 ARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFG-VVALFGNDDFRT 490 Y ++LG W V L L L +A + S+G+FG V+ + GN ++T Sbjct: 168 PEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFIAGNIAWKT 226 >b1124 spermidine/putrescine transport system permease (potC) {Escherichia coli K12-MG1655} Length = 264 Score = 48.5 bits (114), Expect = 1e-006 Identities = 53/231 (22%), Positives = 88/231 (38%), Gaps = 17/231 (7%) Query: 43 WSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL 102 +S + + L + S A SA + + A ALYR RF G+ + + + ++ Sbjct: 47 YSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFVVMMS 106 Query: 103 PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQAL 162 P +V +L ++ LG++ G +L +H+ F LP + L Sbjct: 107 PDIVMAISLLVLF----------MLLGIQ-----LGFWSLLFSHITFCLPFVVVTVYSRL 151 Query: 163 ENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQ 222 + + A LG + R + P + L F L V S GP Sbjct: 152 KGFDVRMLEAAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDD-VVVSSFVTGPS 210 Query: 223 ATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTT 273 + L IY + P A LA I +V L +V+ SQ +++ G T Sbjct: 211 YEILPLKIYSMVKVGVSPEVNA-LATILLVLSLVMVIASQLIARDKTKGNT 260 >b1443 putative transport system permease protein {Escherichia coli K12-MG1655} Length = 264 Score = 46.2 bits (108), Expect = 5e-006 Identities = 49/210 (23%), Positives = 83/210 (39%), Gaps = 17/210 (8%) Query: 43 WSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL 102 +S Q S + V S A L+ L+++V A AL+RR F G+ A+ L + + L Sbjct: 52 FSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAISLLLLLPIAL 111 Query: 103 PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQAL 162 P +V +L+ + +++ LE G I++ H F + + ++ Sbjct: 112 PGIVTGLALLTAF----------KTINLE-----PGFFTIVVGHATFCVVVVFNNVIARF 156 Query: 163 ENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQ 222 + + LG GW FR+V P L + L F L F G Sbjct: 157 RRTSWSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAG--H 214 Query: 223 ATTIELAIYQALSYDYDPARAAMLALIQMV 252 T+ L + L D ++AL+ M+ Sbjct: 215 ERTLPLWLLNQLGRPRDVPVTNVVALLVML 244 Query= Z0077 thiamin-binding periplasmic protein (tbpA) {Escherichia coli O157:H7 EDL933} (327 letters) Score E Sequences producing significant alignments: (bits) Value b0068 thiamin-binding periplasmic protein (tbpA) {Escherichia co... 607 e-175 >b0068 thiamin-binding periplasmic protein (tbpA) {Escherichia coli K12-MG1655} Length = 327 Score = 607 bits (1564), Expect = e-175 Identities = 299/315 (94%), Positives = 299/315 (94%) Query: 13 TAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGK 72 TAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGK Sbjct: 13 TAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGK 72 Query: 73 NSKXXXXXXXXXXXXXXXSKTGLFAKSGVAADAVNVPGGWNNDIFVPFDYGYFAFVYDKN 132 NSK SKTGLFAKSGVAADAVNVPGGWNND FVPFDYGYFAFVYDKN Sbjct: 73 NSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKN 132 Query: 133 KLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVT 192 KLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVT Sbjct: 133 KLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVT 192 Query: 193 VTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA 252 VTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA Sbjct: 193 VTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAA 252 Query: 253 SKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAA 312 SKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAA Sbjct: 253 SKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAA 312 Query: 313 QRQAWISEWQRAVSR 327 QRQAWISEWQRAVSR Sbjct: 313 QRQAWISEWQRAVSR 327 Query= Z0078 orf Unknown function {Escherichia coli O157:H7 EDL933} (189 letters) Score E Sequences producing significant alignments: (bits) Value b0056 orf, hypothetical protein (yabP) {Escherichia coli K12-MG1... 91 4e-020 >b0056 orf, hypothetical protein (yabP) {Escherichia coli K12-MG1655} Length = 216 Score = 91.3 bits (225), Expect = 4e-020 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 16/168 (9%) Query: 8 QISIPASNTTKDPGLTNSQIIRMANLVKKTENMNIFEELWETLRNLFQSDKHSQTAARQI 67 ++S+P T ++ + I +M + K MNIF+ LWETLR+LF SDK QT A ++ Sbjct: 2 KVSVPGMPVTL-LNMSKNDIYKMVSGDKMDVKMNIFQRLWETLRHLFWSDK--QTEAYKL 58 Query: 68 LKDAFYFQNSD----DYSKYFTGAVDGKARDKLTHWLIKFNELKEYAKDPENMAAKASLS 123 L F F N+ + S+YFTGA++ R+K + L FN+LK AK+P+ + AK ++ Sbjct: 59 L---FNFVNNQTGNINASEYFTGAINENEREKFINSLELFNKLKTCAKNPDELVAKGNMR 115 Query: 124 ------PEGTLCVSFFIGDEAIFTLELQLKKSTRTGGIDLSNAYFNGV 165 + L V+FFI I T LQL K G+DL AY GV Sbjct: 116 WVAQTFGDIELSVTFFIEKNKICTQTLQLHKGQGNLGVDLRKAYLPGV 163 Query= Z0079 putative transport protein (yabN) {Escherichia coli O157:H7 EDL933} (552 letters) Score E Sequences producing significant alignments: (bits) Value b0069 putative transport protein (yabN) {Escherichia coli K12-MG... 1132 0.0 b0445 orf, hypothetical protein (ybaE) {Escherichia coli K12-MG1... 195 7e-051 >b0069 putative transport protein (yabN) {Escherichia coli K12-MG1655} Length = 551 Score = 1132 bits (2927), Expect = 0.0 Identities = 544/551 (98%), Positives = 547/551 (99%) Query: 1 MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG 60 MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG Sbjct: 1 MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVG 60 Query: 61 RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH 120 RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH Sbjct: 61 RGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRH 120 Query: 121 ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW 180 ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW Sbjct: 121 ILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHW 180 Query: 181 RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP 240 RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP Sbjct: 181 RFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLP 240 Query: 241 LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN 300 LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN Sbjct: 241 LLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVN 300 Query: 301 VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVL 360 VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVL Sbjct: 301 VWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVL 360 Query: 361 SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTITSEKPAGLESLTLTFYQDHSEHRVIAG 420 SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTI SEKPAGLESLTLTFYQDHSEHRVIAG Sbjct: 361 SPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAG 420 Query: 421 IMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHC 480 IMQQILASHQVTL+IKEI YDQWH GEIESDIWLNSANFTLPLDFS+FAHLCEVPLLQHC Sbjct: 421 IMQQILASHQVTLKIKEIDYDQWHTGEIESDIWLNSANFTLPLDFSVFAHLCEVPLLQHC 480 Query: 481 IPIDWQVDAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFD 540 IPIDWQ DAARWRNGEMNLANWCQQLVASKAMVPL+HHWLIIQGQRSMRGLRMNTLGWFD Sbjct: 481 IPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFD 540 Query: 541 FKSAWFAPPDP 551 FKSAWFAPPDP Sbjct: 541 FKSAWFAPPDP 551 >b0445 orf, hypothetical protein (ybaE) {Escherichia coli K12-MG1655} Length = 566 Score = 195 bits (495), Expect = 7e-051 Identities = 161/578 (27%), Positives = 261/578 (45%), Gaps = 59/578 (10%) Query: 9 QFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLT 68 Q+ RLWQ GK Q T++ELA CS RH+RTLL Q+ GWL W+A+ GRGKR +L Sbjct: 9 QYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLLRQAQEAGWLEWQAQSGRGKRGQLR 68 Query: 69 FLYTGLALQQQRAEDLLE---QDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVL 125 FL T +L+ E LE Q + +L QL +R +L +G ++ LR+ Sbjct: 69 FLVTPESLRNAMMEQALETGKQQDVLELAQLA--PGELRTLLQPFMGGQWQNDTPTLRIP 126 Query: 126 YYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQ-QISPLHWRFFL 184 YYRPL L PG R+E H+A QIFS LTR + D+AHHW+ L W F+L Sbjct: 127 YYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDGLRWDFYL 186 Query: 185 RPGVHFHHGRELEMDDVIASLKRINTLP----LYSHIADIVSPTPWTLDIHLTQPDRWLP 240 R +H+H+G ++ + L + LP L+ + I P L L +PD WL Sbjct: 187 RSTLHWHNGDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLA 246 Query: 241 LLLGQVPAMILPREWETLSNFASHP----IGTGPYAVIRNSTNQLKIQAFDDFFGYRALI 296 L + + +HP IGTGP+ + + + +++++ D + L+ Sbjct: 247 HRLA------------SYCSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLL 294 Query: 297 DEVNVWVLPEIADEPAG-----GLMLKGPQGEEKEIESRLEEG-----CYYLLFDSRTHR 346 V W+ P + ++ G + + + EE + S++ G CY L ++ R Sbjct: 295 KAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTL--RKSPR 352 Query: 347 GANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTITSEKPAGLESLTL 406 + Q R +S ++ + L+ E + L ++ LLP W ++ ++LTL Sbjct: 353 LSLWQARKVIS-IIHQSGLLQTLEVG-ENLITASHALLPGWTIPHWQVPDEVKLPKTLTL 410 Query: 407 TFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWL--------NSAN 458 ++ H +A +Q LA+ L I + W + +++ L + Sbjct: 411 VYHLPIELH-TMAERLQATLAAEGCELTIIFHNAKNWDDTTLQAHADLMMGDRLIGEAPE 469 Query: 459 FTLPLDF---SLFAHLCEVPLLQHCIPIDWQVDAARWRNGEMNLANWCQ----QLVASKA 511 +TL L+ H+ + P H + +DA + E N N + QL+ Sbjct: 470 YTLEQWLRCDPLWPHVFDAPAYAH---LQSTLDAVQIMPDEENRFNALKAVFSQLMTDAT 526 Query: 512 MVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPP 549 + PL ++ I + G+R+ GWF+F AW P Sbjct: 527 LTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAP 564 Query= Z0080 isopropylmalate isomerase subunit (leuD) {Escherichia coli O157:H7 EDL933} (201 letters) Score E Sequences producing significant alignments: (bits) Value b0071 isopropylmalate isomerase subunit (leuD) [4.2.1.33] {Esche... 407 e-115 >b0071 isopropylmalate isomerase subunit (leuD) [4.2.1.33] {Escherichia coli K12-MG1655} Length = 201 Score = 407 bits (1047), Expect = e-115 Identities = 199/200 (99%), Positives = 199/200 (99%) Query: 1 MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPD 60 MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPD Sbjct: 1 MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLFNDWRFLDEKGQQPNPD 60 Query: 61 FVLNFSQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL 120 FVLNF QYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL Sbjct: 61 FVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVIAPSFADIFYGNSFNNQLL 120 Query: 121 PVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIG 180 PVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIG Sbjct: 121 PVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTYRFTIDAFRRHCMMNGLDSIG 180 Query: 181 LTLQHDDAIAAYEAKQPAFM 200 LTLQHDDAIAAYEAKQPAFM Sbjct: 181 LTLQHDDAIAAYEAKQPAFM 200 Query= Z0081 3-isopropylmalate isomerase (dehydratase) subunit (leuC) {Escherichia coli O157:H7 EDL933} (466 letters) Score E Sequences producing significant alignments: (bits) Value b0072 3-isopropylmalate isomerase (dehydratase) subunit (leuC) [... 922 0.0 b1276 aconitate hydrase 1 (acnA) [4.2.1.3] {Escherichia coli K12... 95 9e-021 b0118 aconitate hydrase B (acnB) [4.2.1.3] {Escherichia coli K12... 79 5e-016 >b0072 3-isopropylmalate isomerase (dehydratase) subunit (leuC) [4.2.1.33] {Escherichia coli K12-MG1655} Length = 466 Score = 922 bits (2382), Expect = 0.0 Identities = 458/466 (98%), Positives = 458/466 (98%) Query: 1 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT Sbjct: 1 MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGLRAHGRPVRQPGKTFAT 60 Query: 61 MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP 120 MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP Sbjct: 61 MDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNHPYQGIVHVMGPEQGVTLP 120 Query: 121 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA 180 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA Sbjct: 121 GMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITA 180 Query: 181 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF 240 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF Sbjct: 181 KDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTF 240 Query: 241 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV 300 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV Sbjct: 241 NYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISV 300 Query: 301 NDNIPDPASFADPVERASAEKALAYMGLKPGILLTEVAIDKVFIGSCTNSRIEDLRAAAE 360 NDNIPDPASFADPVERASAEKALAYMGLKPGI LTEVAIDKVFIGSCTNSRIEDLRAAAE Sbjct: 301 NDNIPDPASFADPVERASAEKALAYMGLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAE 360 Query: 361 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP 420 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP Sbjct: 361 IAKGRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNP 420 Query: 421 GERCASTSNRNFEGRQGRGGRTHLVSPXXXXXXXVTGHFADIRNIK 466 GERCASTSNRNFEGRQGRGGRTHLVSP VTGHFADIRNIK Sbjct: 421 GERCASTSNRNFEGRQGRGGRTHLVSPAMAAAAAVTGHFADIRNIK 466 >b1276 aconitate hydrase 1 (acnA) [4.2.1.3] {Escherichia coli K12-MG1655} Length = 891 Score = 95.1 bits (235), Expect = 9e-021 Identities = 91/336 (27%), Positives = 138/336 (41%), Gaps = 26/336 (7%) Query: 123 TIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGRAKTMKIEVQGKAAPGITAKD 182 T+V DSHT G L +G+G E E + Q + + ++ GK GITA D Sbjct: 207 TLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATD 266 Query: 183 IVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMTLCNMAIEMGAKAGLVAPDETTFNY 242 +VL + G G VEF G+ + L + R T+ NM+ E GA G D T +Y Sbjct: 267 LVLTVTQMLRKHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAVTLDY 326 Query: 243 VK--GRL--HAPKGKDFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVI 298 ++ GR + + A W+ + F + + L ++ + P + Sbjct: 327 MRLSGRSEDQVELVEKYAKAQGMWR--NPGDEPIFTSTLELDMNDVEASLAGPKRPQDRV 384 Query: 299 SVNDNIPDPASFADPVERASAEK---ALAYMGLKPGILLTEVAIDKVFIGSCTN-SRIED 354 ++ D +P + ++ +E + K + Y+ L + A+ I SCTN S Sbjct: 385 ALPD-VPKAFAASNELEVNATHKDRQPVDYVMNGHQYQLPDGAVVIAAITSCTNTSNPSV 443 Query: 355 LRAAAEIAK-----GRKVAPGVQALVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSM 409 L AA +AK G K P V+A + PGS V L E GF GC+ Sbjct: 444 LMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYLAKAKLTPYLDELGFNLVGYGCTT 503 Query: 410 CLAMNNDRLNPGERCASTS----------NRNFEGR 435 C+ + +P E S NRNFEGR Sbjct: 504 CIGNSGPLPDPIETAIKKSDLTVGAVLSGNRNFEGR 539 >b0118 aconitate hydrase B (acnB) [4.2.1.3] {Escherichia coli K12-MG1655} Length = 865 Score = 79.3 bits (194), Expect = 5e-016 Identities = 92/373 (24%), Positives = 142/373 (38%), Gaps = 68/373 (18%) Query: 103 PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGR 162 P G++H + LP GDSHT ++F G+ V AT + Sbjct: 474 PGDGVIHSW--LNRMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDM 528 Query: 163 AKTMKIEVQGKAAPGITAKDIVLAI-----------IGKTGSAG-GTGHVVEFCGEAIRD 210 +++ + +GK PGIT +D+V AI + K G +G ++E E + D Sbjct: 529 PESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPD 586 Query: 211 LSMEGRMTLCNMAIEMGAKAGLVAPD-ETTFNYVKGRLHAPKG----------------K 253 L +E L + + E A + + E Y+ + K + Sbjct: 587 LKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQ 646 Query: 254 DFDDAVAYWKTLQTDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADP 313 + +A + L+ D A + V+ + +I + N PD A P Sbjct: 647 GMEKWLANPELLEADADAEYAAVIDIDLADIKEPILCAPND----------PDDAR---P 693 Query: 314 VERASAEKALAYMGLKPGILLTEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQA 373 + EK ID+VFIGSC + I RAA ++ K + Sbjct: 694 LSAVQGEK-----------------IDEVFIGSCMTN-IGHFRAAGKLLDAHKGQLPTRL 735 Query: 374 LVVPGSGPVKAQAEAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFE 433 V P + AQ EG +F ++G +PGCS+C+ N R+ G STS RNF Sbjct: 736 WVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMG-NQARVADGATVVSTSTRNFP 794 Query: 434 GRQGRGGRTHLVS 446 R G G L S Sbjct: 795 NRLGTGANVFLAS 807 Query= Z0082 3-isopropylmalate dehydrogenase (leuB) {Escherichia coli O157:H7 EDL933} (364 letters) Score E Sequences producing significant alignments: (bits) Value b0073 3-isopropylmalate dehydrogenase (leuB) [1.1.1.85] {Escheri... 675 0.0 b1800 putative tartrate dehydrogenase (yeaU) {Escherichia coli K... 181 7e-047 b1136 isocitrate dehydrogenase, specific for NADP+ (icdA) [1.1.1... 69 5e-013 >b0073 3-isopropylmalate dehydrogenase (leuB) [1.1.1.85] {Escherichia coli K12-MG1655} Length = 364 Score = 675 bits (1742), Expect = 0.0 Identities = 339/364 (93%), Positives = 340/364 (93%) Query: 1 MMSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPP 60 MMSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPP Sbjct: 1 MMSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPP 60 Query: 61 ATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEA 120 ATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEA Sbjct: 61 ATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEA 120 Query: 121 FCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIA 180 FCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIA Sbjct: 121 FCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEIERIARIA 180 Query: 181 FESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDIELAHMYIDNATMQLIKDPSQ 240 FESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD+ELAHMYIDNATMQLIKDPSQ Sbjct: 181 FESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPDVELAHMYIDNATMQLIKDPSQ 240 Query: 241 FDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPX 300 FDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANP Sbjct: 241 FDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANPI 300 Query: 301 XXXXXXXXXXXXXXXXXXXXXXXERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYV 360 ERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYV Sbjct: 301 AQILSLALLLRYSLDADDAACAIERAINRALEEGIRTGDLARGAAAVSTDEMGDIIARYV 360 Query: 361 AEGV 364 AEGV Sbjct: 361 AEGV 364 >b1800 putative tartrate dehydrogenase (yeaU) {Escherichia coli K12-MG1655} Length = 361 Score = 181 bits (459), Expect = 7e-047 Identities = 132/369 (35%), Positives = 184/369 (49%), Gaps = 20/369 (5%) Query: 2 MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAI-DNHGQPLPP 60 M K IA +PGDGIG EV+ + ++VL A R+ ++ + +HG+ +P Sbjct: 1 MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPD 60 Query: 61 ATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEA 120 E + DA+ FG+VG W PD G+LL R+ F + NLRP +L+ G+ Sbjct: 61 DWHEQLSRFDAIYFGAVG---WPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGVP- 116 Query: 121 FCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSG-QYEKAFDTEVYHRFEIERIARI 179 CPL A D VRE T G Y GR G ++E V+ R ++RI R Sbjct: 117 -CPL-AGKQPGDIDFYVVRENTEGEY-SSLGGRVNEGTEHEVVIQESVFTRRGVDRILRY 173 Query: 180 AFESARKRRHK-VTSIDKANVLQSSI-LWREIVNEIATEYPDIELAHMYIDNATMQLIKD 237 AFE A+ R K +TS K+N L S+ W E V +A YP+I +ID + + Sbjct: 174 AFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRWDKQHIDILCARFVMQ 233 Query: 238 PSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLN-EQGF-GLYEPAGGSAPDIAGKN 295 P +FDV++ SNLFGDILSD TG++G+ PSA+LN E+ F L+EP GSAPDI GKN Sbjct: 234 PERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFPSLFEPVHGSAPDIYGKN 293 Query: 296 IANPXXXXXXXXXXXXXXXXXXXXXXXXERAINRALEE----GIRTGDLARGAAAVSTDE 351 IANP I A+EE G +T D+ A +T + Sbjct: 294 IANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIAHGPKTPDMKGNA---TTPQ 350 Query: 352 MGDIIARYV 360 + D I + + Sbjct: 351 VADAICKII 359 >b1136 isocitrate dehydrogenase, specific for NADP+ (icdA) [1.1.1.42] {Escherichia coli K12-MG1655} Length = 416 Score = 68.9 bits (167), Expect = 5e-013 Identities = 84/346 (24%), Positives = 142/346 (41%), Gaps = 67/346 (19%) Query: 4 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRF---AMRITTSHYDVGGAAIDNHGQP--L 58 +N I + GDGIG +V LKV+DA + +I+ G + +GQ L Sbjct: 25 ENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWL 84 Query: 59 PPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGL 118 P T++ + + G + P + R + LR+ L+ LRP + YQG Sbjct: 85 PAETLDLIREYRVAIKGPLTTPVGGGI-------RSLNVALRQELDLYICLRPVRYYQGT 137 Query: 119 EAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEKAFDTEVYHRFEI----- 173 + P++ D++ RE + IY G + + S EK + R E+ Sbjct: 138 PS--PVKHPELT---DMVIFRENSEDIYAGI-EWKADSADAEKVIK---FLREEMGVKKI 188 Query: 174 ------------------ERIARIAFESA-RKRRHKVTSIDKANVLQSS----------I 204 +R+ R A E A R VT + K N+++ + + Sbjct: 189 RFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYQL 248 Query: 205 LWREIVNEIATEYP-----------DIELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDI 253 E E+ P +I + + D Q++ P+++DV+ C NL GD Sbjct: 249 AREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDY 308 Query: 254 LSDECAMITGSMGMLPSASLNEQGFGLYEPAGGSAPDIAGKNIANP 299 +SD A G +G+ P A++ ++ L+E G+AP AG++ NP Sbjct: 309 ISDALAAQVGGIGIAPGANIGDE-CALFEATHGTAPKYAGQDKVNP 353 Query= Z0083 2-isopropylmalate synthase (leuA) {Escherichia coli O157:H7 EDL933} (523 letters) Score E Sequences producing significant alignments: (bits) Value b0074 2-isopropylmalate synthase (leuA) [4.1.3.12] {Escherichia ... 994 0.0 >b0074 2-isopropylmalate synthase (leuA) [4.1.3.12] {Escherichia coli K12-MG1655} Length = 523 Score = 994 bits (2570), Expect = 0.0 Identities = 509/523 (97%), Positives = 510/523 (97%) Query: 1 MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT 60 MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT Sbjct: 1 MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVMEVGFPVSSPGDFESVQT 60 Query: 61 IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE 120 IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE Sbjct: 61 IARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIATSPMHIATKLRSTLDEVIE 120 Query: 121 RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEXXXXXXXXXXXXPDTVGYTMPFEF 180 RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVE PDTVGYTMPFEF Sbjct: 121 RAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAINAGATTINIPDTVGYTMPFEF 180 Query: 181 AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS 240 AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS Sbjct: 181 AGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAVHAGARQVEGAMNGIGERAGNCS 240 Query: 241 LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH 300 LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH Sbjct: 241 LEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQICNMPIPANKAIVGSGAFAHSSGIH 300 Query: 301 QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF 360 QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF Sbjct: 301 QDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGRAAVKHRMDEMGYKESEYNLDNLYDAF 360 Query: 361 LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA 420 LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA Sbjct: 361 LKLADKKGQVFDYDLEALAFIGKQQEEPEHFRLDYFSVQSGSNDIATAAVKLACGEEVKA 420 Query: 421 EAANGNGPVDAVYQAINRITDYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL 480 EAANGNGPVDAVYQAINRIT+YNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL Sbjct: 421 EAANGNGPVDAVYQAINRITEYNVELVKYSLTAKGHGKDALGQVDIVANYNGRRFHGVGL 480 Query: 481 ATDIVESSAKAMVHVLNNIWRATEVEKELQRKAQHNENNKETV 523 ATDIVESSAKAMVHVLNNIWRA EVEKELQRKAQHNENNKETV Sbjct: 481 ATDIVESSAKAMVHVLNNIWRAAEVEKELQRKAQHNENNKETV 523 Query= Z0084 leu operon leader peptide (leuL) {Escherichia coli O157:H7 EDL933} (28 letters) Score E Sequences producing significant alignments: (bits) Value b0075 leu operon leader peptide (leuL) {Escherichia coli K12-MG1... 57 2e-010 >b0075 leu operon leader peptide (leuL) {Escherichia coli K12-MG1655} Length = 28 Score = 57.4 bits (137), Expect = 2e-010 Identities = 28/28 (100%), Positives = 28/28 (100%) Query: 1 MTHIVRFIGLLLLNASSLRGRRVSGIQH 28 MTHIVRFIGLLLLNASSLRGRRVSGIQH Sbjct: 1 MTHIVRFIGLLLLNASSLRGRRVSGIQH 28 Query= Z0086 probable transcriptional activator for leuABCD operon (leuO) {Escherichia coli O157:H7 EDL933} (320 letters) Score E Sequences producing significant alignments: (bits) Value b0076 probable transcriptional activator for leuABCD operon (leu... 611 e-176 b0603 putative transcriptional regulator LYSR-type (ybdO) {Esche... 77 2e-015 b0338 cyn operon positive regulator (cynR) {Escherichia coli K12... 64 1e-011 b0629 putative transcriptional regulator LYSR-type (ybeF) {Esche... 62 7e-011 b3711 putative transcriptional regulator LYSR-type (yidZ) {Esche... 60 1e-010 b3118 transcriptional activator of tdc operon (tdcA) {Escherichi... 54 1e-008 b2839 positive regulator for lys (lysR) {Escherichia coli K12-MG... 51 9e-008 b1988 nitrogen assimilation control protein (nac) {Escherichia c... 51 1e-007 b2289 NADH dehydrogenase transcriptional regulator, LysR family ... 50 2e-007 b1339 putative transcriptional regulator LYSR-type (ydaK) {Esche... 47 2e-006 b0768 putative transcriptional regulator LYSR-type (ybhD) {Esche... 45 6e-006 >b0076 probable transcriptional activator for leuABCD operon (leuO) {Escherichia coli K12-MG1655} Length = 373 Score = 611 bits (1575), Expect = e-176 Identities = 306/320 (95%), Positives = 307/320 (95%) Query: 1 MTVELSMPEVQTDHPETAEFSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVS 60 +TVELSMPEVQTDHPETAE SKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVS Sbjct: 54 VTVELSMPEVQTDHPETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVS 113 Query: 61 NAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVF 120 NAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVF Sbjct: 114 NAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVF 173 Query: 121 HLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP 180 HLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP Sbjct: 174 HLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP 233 Query: 181 EFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQA 240 EFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQA Sbjct: 234 EFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQA 293 Query: 241 SIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESXXXXXXXXXXXXNSRTCYLSWHEA 300 SIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAES NSRTCYLSWHEA Sbjct: 294 SIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSWHEA 353 Query: 301 AGRDKGHQWMEEQLVSICKR 320 AGRDKGHQWMEEQLVSICKR Sbjct: 354 AGRDKGHQWMEEQLVSICKR 373 >b0603 putative transcriptional regulator LYSR-type (ybdO) {Escherichia coli K12-MG1655} Length = 300 Score = 76.6 bits (187), Expect = 2e-015 Identities = 61/281 (21%), Positives = 122/281 (43%), Gaps = 8/281 (2%) Query: 25 LRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQP 84 L+ DLNLL +F+ + Q +I++AA L ++ AVS ++ RL+ FND LF+R G+GI P Sbjct: 7 LKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAP 66 Query: 85 TARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFH---LCVCSPLDSILTSQIYNHIE 141 T L + + L+ ++ + + + L CS ++ + + Sbjct: 67 TTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFIIYGPQLISCS--NNSMLIRCLRQDS 124 Query: 142 QIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHP 201 + H + S+ +N E L +++ + VI+ +PL L+ S HP Sbjct: 125 SVEIECHDILMSA--ENAEELLVHRKADLVITQMPVISRSVICMPLHTIRNTLICSNRHP 182 Query: 202 TIKGPLLKHDVYNEQHA-AVSLDRFASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTH 260 I + E+ +S Q D I+++G +++++++ ++ T Sbjct: 183 RITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTD 242 Query: 261 LVAIAPRWLAEEFAESXXXXXXXXXXXXNSRTCYLSWHEAA 301 L+ I P L + + S Y+S+++++ Sbjct: 243 LLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLYISYNKSS 283 >b0338 cyn operon positive regulator (cynR) {Escherichia coli K12-MG1655} Length = 299 Score = 63.9 bits (154), Expect = 1e-011 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 22/252 (8%) Query: 33 LTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPT------- 85 + F AV + + TRAA L +SQPA+S + +L+ LF R GR I+ T Sbjct: 6 INYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVWR 65 Query: 86 ---ARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQ 142 +RA Q G+ ++A+ V + GS + V S + Sbjct: 66 QYASRALQELGAGKRAIHDVADLTRGS----------LRIAVTPTFTSYFIGPLMADFYA 115 Query: 143 IAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPT 202 P+I + + + E L E + I++ H PE ++PL + + LV +++HP Sbjct: 116 RYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPLLTESLALVVAQHHPL 175 Query: 203 IKGPLLKHDVYNEQHAAVSLDRFASFSQ--PWYDTVDKQASIAYQGMAMMSVLSVVSQTH 260 + +++ + FA+ Q + + + + ++ +VL ++ +T Sbjct: 176 AVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVVIEANSISAVLELIRRTS 235 Query: 261 LVAIAPRWLAEE 272 L + P +A + Sbjct: 236 LSTLLPAAIATQ 247 >b0629 putative transcriptional regulator LYSR-type (ybeF) {Escherichia coli K12-MG1655} Length = 266 Score = 61.6 bits (148), Expect = 7e-011 Identities = 49/219 (22%), Positives = 101/219 (46%), Gaps = 9/219 (4%) Query: 51 VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSG 110 +L ++ A+S ++ +L+V+F D LF+R G+G+ PTA A L + Q L+ + L G Sbjct: 1 MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLESILGALDIEG 60 Query: 111 FEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEF 170 +R + + +++ IY I+ P + + ++ + E+QL +T+ Sbjct: 61 --SYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQL--LLRNPPISDAENQLSQFQTDL 116 Query: 171 VISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAV--SLDRFASF 228 +I LF D MVL+ + +P + + + N H + F+ Sbjct: 117 IIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLLPEEQNFSGL 176 Query: 229 SQPWYDTV-DKQASIAYQGMAMMSVLSVVSQTHLVAIAP 266 Q + D+Q I + ++++ ++V+ + ++AI P Sbjct: 177 RQRVQEMFPDRQ--INFTSYNILTIAALVANSDMLAIIP 213 >b3711 putative transcriptional regulator LYSR-type (yidZ) {Escherichia coli K12-MG1655} Length = 319 Score = 60.5 bits (145), Expect = 1e-010 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 12/192 (6%) Query: 22 KPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRG 81 K + +DLNLL +MQE+++T+AA + ++ AVS ++A+L+ F+D LFV G Sbjct: 2 KKSITTLDLNLLLCLQLLMQERSVTKAAKRINVTPSAVSKSLAKLRAWFDDPLFVNSPLG 61 Query: 82 IQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIE 141 + PT + ++ + +Q+ N L F L SPL I+ + + I Sbjct: 62 LSPTPLMVSMEQNLAEWMQM-SNLLLDKPHHQTPRGLKFELAAESPLMMIMLNALSKQIY 120 Query: 142 QIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFH---RPEFTSVPLFKDEMVLVAS- 197 Q P + + + + ++ + E + S + H R +S+PL D VL + Sbjct: 121 QRYPQATIKLR-NWDYDSLDAITRGEVDIGFSGRESHPRSRELLSSLPLAIDYEVLFSDV 179 Query: 198 ------KNHPTI 203 K+HP + Sbjct: 180 PCVWLRKDHPAL 191 >b3118 transcriptional activator of tdc operon (tdcA) {Escherichia coli K12-MG1655} Length = 312 Score = 53.9 bits (128), Expect = 1e-008 Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 13/191 (6%) Query: 33 LTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLF 92 L VF V++ +I AA LG++QPAVS + ++ F EL VR G+ T L Sbjct: 12 LVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLL 71 Query: 93 G---SVRQALQLVQNELPGSGFEPASSERVFHLCVCSP--LDSILTSQIYNHIEQIAPNI 147 S+ + ++ + NE+ G SSE V + P + S + N +++ P Sbjct: 72 SRSESITREMKNMVNEISG-----MSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKA 126 Query: 148 HVMFKSSLNQNTEHQLRYQETEFVIS--YEDFHRPEFTSVPLFKDEMVLVASKNHPTIKG 205 V + + +R +F I + + PLF+ E VLVASK+ T G Sbjct: 127 QVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSR-TCTG 185 Query: 206 PLLKHDVYNEQ 216 + NEQ Sbjct: 186 TTTLESLKNEQ 196 >b2839 positive regulator for lys (lysR) {Escherichia coli K12-MG1655} Length = 311 Score = 51.2 bits (121), Expect = 9e-008 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 9/207 (4%) Query: 28 VDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR 87 V+L + +F AVM ++T AAH+L SQP VS +AR + + +LF R + PT + Sbjct: 4 VNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEKVIGLKLFERVRGRLHPTVQ 63 Query: 88 AFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCV-CSPLDS-ILTSQIYNHIEQIAP 145 +LF V+++ + + S E R L + C P+ S Q+ P Sbjct: 64 GLRLFEEVQRSWYGLDRIV--SAAESLREFRQGELSIACLPVFSQSFLPQLLQPFLARYP 121 Query: 146 NIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTS-VPLFKDEMVLVASKNHP-TI 203 ++ + + E L Q + ++ E H P T L + V V HP + Sbjct: 122 DVSLNIVPQESPLLEEWLSAQRHDLGLT-ETLHTPAGTERTELLSLDEVCVLPPGHPLAV 180 Query: 204 KGPLLKHDVYNEQHAAVSLDRFASFSQ 230 K L D E + +SL R S+ Q Sbjct: 181 KKVLTPDDFQGENY--ISLSRTDSYRQ 205 >b1988 nitrogen assimilation control protein (nac) {Escherichia coli K12-MG1655} Length = 305 Score = 50.8 bits (120), Expect = 1e-007 Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 1/170 (0%) Query: 33 LTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLF 92 L F ++ ++T+AA VL ++QPA+S VA L+ N +L +R RG+ PT L+ Sbjct: 6 LKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDAGKILY 65 Query: 93 GSVRQAL-QLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMF 151 R L Q Q +L A S +V S +T + + P I + Sbjct: 66 THARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPEIVIYL 125 Query: 152 KSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHP 201 + +L + + + YE +S L K+++ LV +++ P Sbjct: 126 HENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDCP 175 >b2289 NADH dehydrogenase transcriptional regulator, LysR family (lrhA) {Escherichia coli K12-MG1655} Length = 312 Score = 50.1 bits (118), Expect = 2e-007 Identities = 39/153 (25%), Positives = 65/153 (42%), Gaps = 5/153 (3%) Query: 28 VDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR 87 +DL+LL F AV AA + +Q AVS + RL+ + ELF R+GR T Sbjct: 11 LDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLEQLVGKELFARHGRNKLLTEH 70 Query: 88 AFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNI 147 QL G R+ L+ N+ S ++ + V + + + N + + P + Sbjct: 71 GIQLLGYARKILRF--NDEACSSLMFSNLQGVLTIGASDESADTILPFLLNRVSSVYPKL 128 Query: 148 HVMFKSSLNQNTEHQLRYQETEFVISYEDFHRP 180 + + N L QE + +++ HRP Sbjct: 129 ALDVRVKRNAYMAEMLESQEVDLMVT---THRP 158 >b1339 putative transcriptional regulator LYSR-type (ydaK) {Escherichia coli K12-MG1655} Length = 302 Score = 46.6 bits (109), Expect = 2e-006 Identities = 40/187 (21%), Positives = 81/187 (43%), Gaps = 8/187 (4%) Query: 28 VDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR 87 V ++ + F V ++ +I A+ +L MSQPA+S ++ L+ +LF R +G+ T Sbjct: 5 VKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDA 64 Query: 88 A---FQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIA 144 +Q + + L+ Q ++ + A ++ + + + L + + Q Sbjct: 65 GESFYQHASLILEELRAAQEDIRQRQGQLAGQ---INIGMGASISRSLMPAVISRFHQQH 121 Query: 145 PNIHVMFKSSLNQNTEHQLRYQETEFVIS--YEDFHRPEFTSVPLFKDEMVLVASKNHPT 202 P + V + ++LR E +F I+ Y+ + EFT L + + + HP Sbjct: 122 PQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHEFTFEKLLEKQFAIFCRPGHPA 181 Query: 203 IKGPLLK 209 I +K Sbjct: 182 IGARSIK 188 >b0768 putative transcriptional regulator LYSR-type (ybhD) {Escherichia coli K12-MG1655} Length = 338 Score = 45.1 bits (105), Expect = 6e-006 Identities = 39/197 (19%), Positives = 81/197 (41%), Gaps = 2/197 (1%) Query: 14 HPETAEFSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDE 73 HP+++ + +L+ + F + + + AA +L ++QPA++ + +++ + + Sbjct: 10 HPKSSLPFSGVIMKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHVQ 69 Query: 74 LFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHL-CVCSPLDSIL 132 LF R R + T +L R+ ++ L A + L C+ + + L Sbjct: 70 LFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFL 129 Query: 133 TSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEM 192 I ++ PNI V N + E++F I+ + PL + Sbjct: 130 PLAI-GKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPF 188 Query: 193 VLVASKNHPTIKGPLLK 209 VL ++HP K L++ Sbjct: 189 VLACRRDHPLAKKQLVE 205 Query= Z0087 acetolactate synthase III, valine sensitive, large subunit (ilvI) {Escherichia coli O157:H7 EDL933} (602 letters) Score E Sequences producing significant alignments: (bits) Value b0077 acetolactate synthase III, valine sensitive, large subunit... 1147 0.0 b3671 acetolactate synthase I,valine-sensitive, large subunit (i... 376 e-105 b0507 glyoxylate carboligase (gcl) [4.1.1.47] {Escherichia coli ... 286 2e-078 b3767 acetolactate synthase II, large subunit, cryptic, interrup... 273 2e-074 b0871 pyruvate oxidase (poxB) [1.2.2.2] {Escherichia coli K12-MG... 192 4e-050 b2373 putative enzyme {Escherichia coli K12-MG1655} 153 4e-038 >b0077 acetolactate synthase III, valine sensitive, large subunit (ilvI) [4.1.3.18] {Escherichia coli K12-MG1655} Length = 604 Score = 1147 bits (2967), Expect = 0.0 Identities = 574/602 (95%), Positives = 574/602 (95%) Query: 1 MSLAANCLSKIGRLMCFTHFFRQTVRQAMEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLD 60 MSLAANCLSKIGRLMCFTHFFRQTVRQAMEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLD Sbjct: 3 MSLAANCLSKIGRLMCFTHFFRQTVRQAMEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLD 62 Query: 61 IYDALHTVGGIGHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPXXXXXXXXXXXXYMD 120 IYDALHTVGGI HVLVRHEQAAVHMADGLARATGEVGVVLVTSGP YMD Sbjct: 63 IYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMD 122 Query: 121 SIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASG 180 SIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASG Sbjct: 123 SIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASG 182 Query: 181 RPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVY 240 RPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVY Sbjct: 183 RPGPVVVDLPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVY 242 Query: 241 VGGGAITAGCHQQLKETVEALNLPVVSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHN 300 VGGGAITAGCHQQLKETVEALNLPVV SLMGLGAFPATHRQALGMLGMHGTYEANMTMHN Sbjct: 243 VGGGAITAGCHQQLKETVEALNLPVVCSLMGLGAFPATHRQALGMLGMHGTYEANMTMHN 302 Query: 301 ADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVXXXXX 360 ADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQV Sbjct: 303 ADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQML 362 Query: 361 XXXXXXXAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGGAYVT 420 AHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKG AYVT Sbjct: 363 ELLSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT 422 Query: 421 SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQ 480 SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQ Sbjct: 423 SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQ 482 Query: 481 MNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYG 540 MNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYG Sbjct: 483 MNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYG 542 Query: 541 HVGIQISHPQELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTE 600 HVGIQISHP ELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTE Sbjct: 543 HVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTE 602 Query: 601 RT 602 RT Sbjct: 603 RT 604 >b3671 acetolactate synthase I,valine-sensitive, large subunit (ilvB) [4.1.3.18] {Escherichia coli K12-MG1655} Length = 562 Score = 376 bits (966), Expect = e-105 Identities = 209/566 (36%), Positives = 309/566 (54%), Gaps = 24/566 (4%) Query: 33 SGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIGHVLVRHEQAAVHMADGLARA 92 +GAE +V L QG+K V G PGG++L +YDAL I H+L RHEQ A +A G+AR Sbjct: 14 TGAEFIVHFLEQQGIKIVTGIPGGSILPVYDALSQSTQIRHILARHEQGAGFIAQGMART 73 Query: 93 TGEVGVVLVTSGPXXXXXXXXXXXXYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRP 152 G+ V + SGP +DSIPL+ ++GQV S+IG DAFQE D GIS P Sbjct: 74 DGKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTDAFQEVDTYGISIP 133 Query: 153 VVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMRS 212 + KH++LV+ E++PQV+ AF +A SGRPGPV +D+PKD+ ++ +M Sbjct: 134 ITKHNYLVRHIEELPQVMSDAFRIAQSGRPGPVWIDIPKDVQTAVFEI----ETQPAMAE 189 Query: 213 YNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVSSLMGL 272 + I+ A + AAK+PV+Y+GGG I A +++E E LP +LM L Sbjct: 190 KAAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPA--RVRELAEKAQLPTTMTLMAL 247 Query: 273 GAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHID 332 G P H +LGMLGMHG N + AD++ +G RFDDR ++CPNA ++H+D Sbjct: 248 GMLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVD 307 Query: 333 IDPTSISKTVTADIPIVGDARQVXXXXXXXXXXXXAHQPLDEIR---DWWQQIEQWRARQ 389 ID + K + I D V PL E + +W Q + + Sbjct: 308 IDRAELGKIKQPHVAIQADVDDVLAQLI----------PLVEAQPRAEWHQLVADLQREF 357 Query: 390 CLKYDTHSEKIKPQAVIETLWRLTKGGAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLG 449 + + +I + A +T+DVGQHQM+ A YP ++PR+W+ SGGLG Sbjct: 358 PCPIPKACDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLG 417 Query: 450 TMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGMV 509 TMGFGLPAA+G +A P+ V+C +GDGS+ MNIQE++TA + +L V ++ +NN LG+V Sbjct: 418 TMGFGLPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLV 477 Query: 510 KQWQDMIY-SGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPQELESKLSEALEQVRNNRL 568 Q Q + Y G + +Y + +F+++A +G +++ + ++ L E + + Sbjct: 478 HQQQSLFYEQGVFAATYPGKI-NFMQIAAGFGLETCDLNNEADPQASLQEIINRPGP--- 533 Query: 569 VFVDVTVDGSEHVYPMQIRGGGMDEM 594 + V +D E VYPM G EM Sbjct: 534 ALIHVRIDAEEKVYPMVPPGAANTEM 559 >b0507 glyoxylate carboligase (gcl) [4.1.1.47] {Escherichia coli K12-MG1655} Length = 593 Score = 286 bits (733), Expect = 2e-078 Identities = 179/560 (31%), Positives = 288/560 (51%), Gaps = 16/560 (2%) Query: 29 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIGHVLVRHEQAAVHMADG 88 M + + + L +G+ FG PG A+ Y A+ GGI H+L RH + A HMA+G Sbjct: 1 MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEG 60 Query: 89 LARAT-GEVGVVLVTSGPXXXXXXXXXXXXYMDSIPLVVLSGQVATSLIGYDAFQECDMV 147 RAT G +GV L TSGP DSIP++ ++GQ + + + FQ D+ Sbjct: 61 YTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITGQAPRARLHKEDFQAVDIE 120 Query: 148 GISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPES 207 I++PV K + V++ +P+VL++AF L SGRPGPV+VDLP D+ + E Sbjct: 121 AIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEP 180 Query: 208 VSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVS 267 + + Y P + + QI++A++ L+ A++PV+ GGG I A L++ E ++PV+ Sbjct: 181 LPV--YKPAAS--RMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIP 236 Query: 268 SLMGLGAFPATHRQALGMLGMHGTYE-ANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNA 326 +LMG G P H GM+G+ + N T+ +D++F +G RF +R T ++ KY Sbjct: 237 TLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFGIGNRFANRHTGSVEKYTEGR 296 Query: 327 TVLHIDIDPTSISKTVTADIPIVGDARQVXXXXXXXXXXXXAHQPLDEIRDWWQQIEQWR 386 ++HIDI+PT I + + D+ IV DA+ L ++W +Q + Sbjct: 297 KIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQEMQKAGRLPCRKEWVADCQQRK 356 Query: 387 ARQCLKYDTHSEKIKPQAVIETLWRLTKGGAYVTSDVGQHQMFAALYYPFDKPRRWINSG 446 K + +KPQ V E + + + +G Q+ AA K R WIN G Sbjct: 357 RTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCG 416 Query: 447 GLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYL 506 G +G+ +PAALGV A P+ VV ++GD Q I+EL+ Q+ +P + V +NN YL Sbjct: 417 QAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQFLIEELAVGAQFNIPYIHVLVNNAYL 476 Query: 507 GMVKQWQ---DMIYSGRHSQSYMQSLP------DFVRLAEAYGHVGIQISHPQELESKLS 557 G+++Q Q DM Y + + + S D V++AE G I++ P+++ Sbjct: 477 GLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFE 536 Query: 558 EALEQVRNNRL-VFVDVTVD 576 +A + R+ V V+V ++ Sbjct: 537 QAKALMAQYRVPVVVEVILE 556 >b3767 acetolactate synthase II, large subunit, cryptic, interrupted (ilvG_1) {Escherichia coli K12-MG1655} Length = 327 Score = 273 bits (698), Expect = 2e-074 Identities = 146/320 (45%), Positives = 202/320 (63%), Gaps = 7/320 (2%) Query: 32 LSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIGHVLVRHEQAAVHMADGLAR 91 ++GA+ VV +L QGV VFGYPGGA++ +YDAL+ GG+ H+L RHEQ A A G AR Sbjct: 1 MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYAR 59 Query: 92 ATGEVGVVLVTSGPXXXXXXXXXXXXYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISR 151 ATG+ GV + TSGP +DSIP+V ++GQV+ IG DAFQE D++G+S Sbjct: 60 ATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAPFIGTDAFQEVDVLGLSL 119 Query: 152 PVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSMR 211 KHSFLV+ E++P+++ +AF +A SGRPGPV+VD+PKDI + L W +V Sbjct: 120 ACTKHSFLVQSLEELPRIMAEAFDVACSGRPGPVLVDIPKDIQLASGDLE-PWFTTVE-- 176 Query: 212 SYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVSSLMG 271 N T H ++++A Q L A+KP++YVGGG A L+E + A +P +L G Sbjct: 177 --NEVTFPH-AEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALREFLAATKMPATCTLKG 233 Query: 272 LGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHI 331 LGA A + LGMLGMHGT AN + D++ AVG RFDDR T L + P+A+V+H+ Sbjct: 234 LGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDRVTGKLNTFAPHASVIHM 293 Query: 332 DIDPTSISKTVTADIPIVGD 351 DIDP ++K A + + GD Sbjct: 294 DIDPAEMNKLRQAHVALQGD 313 >b0871 pyruvate oxidase (poxB) [1.2.2.2] {Escherichia coli K12-MG1655} Length = 572 Score = 192 bits (489), Expect = 4e-050 Identities = 164/560 (29%), Positives = 253/560 (45%), Gaps = 33/560 (5%) Query: 35 AEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGIGHVLVRHEQAAVHMADGLARATG 94 A + ++L GVK+++G G ++ + D+L+ +G I + RHE+ A A A+ +G Sbjct: 6 AAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSG 65 Query: 95 EVGVVLVTSGPXXXXXXXXXXXXYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVV 154 E+ V + GP + + +P++ ++ + +S IG FQE + R Sbjct: 66 ELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECS 125 Query: 155 KHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI-LNPANKLPYVWPESVSMRSY 213 + LV E IPQVL A A R G VV LP D+ L PA PE +M Y Sbjct: 126 HYCELVSSPEQIPQVLAIAMRKAVLNR-GVSVVVLPGDVALKPA-------PEGATMHWY 177 Query: 214 N---PTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPVVSSLM 270 + P T + ++++ Q L + + G G AG H++L E + P+V +L Sbjct: 178 HAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGC--AGAHKELVEFAGKIKAPIVHALR 235 Query: 271 GLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLH 330 G + +GM G+ G TM NAD + +G +F R A Y +A ++ Sbjct: 236 GKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPYR-----AFYPTDAKIIQ 290 Query: 331 IDIDPTSISKTVTADIPIVGDARQVXXXXXXXXXXXXAHQPLDEIRDWWQQIEQWR-ARQ 389 IDI+P SI D+ +VGD + + LD + +E +R AR+ Sbjct: 291 IDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLD------KALEDYRDARK 344 Query: 390 CL-KYDTHSEK-IKPQAVIETLWRLTKGGAYVTSDVGQHQMFAALYYPFDKPRRWINSGG 447 L SEK I PQ + + + A T DVG ++AA Y + RR + S Sbjct: 345 GLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFN 404 Query: 448 LGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLG 507 G+M +P ALG + PE VV + GDG M + + + +Q +LPV +V NN LG Sbjct: 405 HGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMKLPVKIVVFNNSVLG 464 Query: 508 MVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPQELESKLSEALEQVRNNR 567 V +M G + +F R+AEA G GI++ E++ L A + Sbjct: 465 FVA--MEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFS---IDG 519 Query: 568 LVFVDVTVDGSEHVYPMQIR 587 V VDV V E P QI+ Sbjct: 520 PVLVDVVVAKEELAIPPQIK 539 >b2373 putative enzyme {Escherichia coli K12-MG1655} Length = 564 Score = 153 bits (386), Expect = 4e-038 Identities = 127/556 (22%), Positives = 237/556 (42%), Gaps = 25/556 (4%) Query: 29 MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVG-GIGHVLVRHEQAAVHMAD 87 ++M G ++V +L + ++G G V D+ A H GI ++ RHEQ+A + A Sbjct: 5 LQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDM--ARHAQAEGIRYIGFRHEQSAGYAAA 62 Query: 88 GLARATGEVGVVLVTSGPXXXXXXXXXXXXYMDSIPLVVLSGQVATSLIGYDA--FQECD 145 T + G+ L S P ++ P++++SG +++ ++E D Sbjct: 63 ASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELD 122 Query: 146 MVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWP 205 + ++P K +F V Q +D+ L +A ++ SGRPG V +DLP ++L + Sbjct: 123 QMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALT 182 Query: 206 ESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAITAGCHQQLKETVEALNLPV 265 V + + +P + A+ L A++P++ +G GA + +QL+E +E+ +P Sbjct: 183 TIVKVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPF 242 Query: 266 VSSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPN 325 + M G TH + + + NADV+ VG R + + + + Sbjct: 243 LPMSMAKGILEDTH-------PLSAAAARSFALANADVVMLVGARLNWLLAHGKKGWAAD 295 Query: 326 ATVLHIDIDPTSISKTVTADIPIVGDARQVXXXXXXXXXXXXAHQPL--DEIRDWWQQIE 383 + +DI+P I +P+VGD PL +I + +Q Sbjct: 296 TQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVWRDILNIHKQQN 355 Query: 384 QWRARQCLKYDTHS-EKIKPQAVIETLWRLTKGGAYVTSDVGQHQMFAALYYPFDKPRRW 442 + + L DT + + + R + Y+ ++ A KPRR Sbjct: 356 AQKMHEKLSTDTQPLNYFNALSAVRDVLRENQ-DIYLVNEGANTLDNARNIIDMYKPRRR 414 Query: 443 INSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLN 502 ++ G G MG G+ A+G + VV + GD + + E+ T +Y LPV +V N Sbjct: 415 LDCGTWGVMGIGMGYAIGASVT-SGSPVVAIEGDSAFGFSGMEIETICRYNLPVTIVIFN 473 Query: 503 NR--YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPQELESKLSEAL 560 N Y G D+ +G S + + + +L +A+ VG ++ EL L+ Sbjct: 474 NGGIYRG---DGVDLSGAGAPSPTDLLHHARYDKLMDAFRGVGYNVTTTDELRHALTTG- 529 Query: 561 EQVRNNRLVFVDVTVD 576 +++ + ++V +D Sbjct: 530 --IQSRKPTIINVVID 543 Query= Z0088 acetolactate synthase III, valine sensitive, small subunit (ilvH) {Escherichia coli O157:H7 EDL933} (163 letters) Score E Sequences producing significant alignments: (bits) Value b0078 acetolactate synthase III, valine sensitive, small subunit... 304 2e-084 b3670 acetolactate synthase I, valine sensitive, small subunit (... 49 2e-007 >b0078 acetolactate synthase III, valine sensitive, small subunit (ilvH) [4.1.3.18] {Escherichia coli K12-MG1655} Length = 163 Score = 304 bits (778), Expect = 2e-084 Identities = 161/163 (98%), Positives = 162/163 (99%) Query: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI Sbjct: 1 MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQI 60 Query: 61 EKQLYKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 EKQL+KLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY Sbjct: 61 EKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLY 120 Query: 121 TVQLAGTSDKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163 TVQLAGTS KLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR Sbjct: 121 TVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDKIMR 163 >b3670 acetolactate synthase I, valine sensitive, small subunit (ilvN) [4.1.3.18] {Escherichia coli K12-MG1655} Length = 96 Score = 48.9 bits (115), Expect = 2e-007 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 4 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQ 63 IL + + N G ++ V GLF++R +N+E + P D S + + V D++ LEQ+ Q Sbjct: 10 ILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWL-LVNDDQRLEQMISQ 68 Query: 64 LYKLVDVLRV 73 + KL DV++V Sbjct: 69 IDKLEDVVKV 78 Query= Z0089 fruR leader peptide (fruL) {Escherichia coli O157:H7 EDL933} (28 letters) Score E Sequences producing significant alignments: (bits) Value b0079 fruR leader peptide (fruL) {Escherichia coli K12-MG1655} 64 1e-012 >b0079 fruR leader peptide (fruL) {Escherichia coli K12-MG1655} Length = 28 Score = 64.3 bits (155), Expect = 1e-012 Identities = 28/28 (100%), Positives = 28/28 (100%) Query: 1 MRNLQPNMSRWAFFAKSVGTWNKSSCRS 28 MRNLQPNMSRWAFFAKSVGTWNKSSCRS Sbjct: 1 MRNLQPNMSRWAFFAKSVGTWNKSSCRS 28 Query= Z0090 transcriptional repressor of fru operon and others (fruR) {Escherichia coli O157:H7 EDL933} (334 letters) Score E Sequences producing significant alignments: (bits) Value b0080 transcriptional repressor of fru operon and others (fruR) ... 663 0.0 b3753 regulator for rbs operon (rbsR) {Escherichia coli K12-MG1655} 114 9e-027 b1320 putative LACI-type transcriptional regulator (ycjW) {Esche... 89 3e-019 b1658 transcriptional repressor for pur regulon, glyA, glnB, prs... 83 3e-017 b3934 regulator for deo operon, udp, cdd, tsx, nupC, and nupG (c... 79 4e-016 b2714 ascBF operon repressor (ascG) {Escherichia coli K12-MG1655} 77 2e-015 b4264 L-idonate transcriptional regulator (idnR) {Escherichia co... 75 5e-015 b2837 repressor of galETK operon (galR) {Escherichia coli K12-MG... 68 8e-013 b2151 mgl repressor, galactose operon inducer (galS) {Escherichi... 66 3e-012 b3438 regulator of gluconate (gnt) operon (gntR) {Escherichia co... 64 2e-011 b1620 repressor of malX and Y genes (malI) {Escherichia coli K12... 63 3e-011 b0345 transcriptional repressor of the lac operon (lacI) {Escher... 60 2e-010 b4241 repressor of treA,B,C (treR) {Escherichia coli K12-MG1655} 59 6e-010 b3751 D-ribose periplasmic binding protein (rbsB) {Escherichia c... 48 8e-007 >b0080 transcriptional repressor of fru operon and others (fruR) {Escherichia coli K12-MG1655} Length = 334 Score = 663 bits (1711), Expect = 0.0 Identities = 334/334 (100%), Positives = 334/334 (100%) Query: 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR 60 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR Sbjct: 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR 60 Query: 61 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA 120 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA Sbjct: 61 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA 120 Query: 121 IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE 180 IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE Sbjct: 121 IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE 180 Query: 181 TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ 240 TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ Sbjct: 181 TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ 240 Query: 241 ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV 300 ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV Sbjct: 241 ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV 300 Query: 301 LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS 334 LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS Sbjct: 301 LEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS 334 >b3753 regulator for rbs operon (rbsR) {Escherichia coli K12-MG1655} Length = 330 Score = 114 bits (285), Expect = 9e-027 Identities = 89/321 (27%), Positives = 161/321 (50%), Gaps = 25/321 (7%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 + ++ARLAGVS +T S+VIN K VS+ KV A ++E NY P+A+A L+ +T Sbjct: 4 MKDVARLAGVSTSTVSHVIN---KDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTH 60 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 +IG++I N Y+ + +ER +RGY L++ +E R +E L+Q++VD ++ Sbjct: 61 TIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLL 120 Query: 123 V--STSLPPEHPFYQRWANDPFPIV---ALDRALDREHFTSVVGADQDDAEMLAEELRKF 177 + + + P QR+ P ++ D D S++G D ++ + + Sbjct: 121 LLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRI 180 Query: 178 PAETVLYLGALPELSVSFLREQGFRTAWK------DDPREVHFLYANSYEREAAAQLFEK 231 T G L + + + LR +G+R A K D EV + + +A QL Sbjct: 181 ACIT----GPL-DKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLL-- 233 Query: 232 WLETHPM-PQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVA 290 +HP+ PQA+FT + A+ GV + + ++P D+A+ + D EL F+ P+ + Sbjct: 234 ---SHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIH 290 Query: 291 QRHRDVAERVLEIVLASLDEP 311 Q ++ E +++++ + +P Sbjct: 291 QPKDELGELAIDVLIHRITQP 311 >b1320 putative LACI-type transcriptional regulator (ycjW) {Escherichia coli K12-MG1655} Length = 332 Score = 89.4 bits (220), Expect = 3e-019 Identities = 68/289 (23%), Positives = 135/289 (46%), Gaps = 13/289 (4%) Query: 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSI 64 +IAR+AGVS++T S V+N KQ +S + EKV+ + E Y PN +A L + +I Sbjct: 7 DIARVAGVSKSTVSRVLN---KQTNISPEAREKVLRAIEELQYQPNKLARALTSSGFDAI 63 Query: 65 GLVIPDLENTS-----YTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVD 119 ++ T+ ++ + + + +A + G+ +++ S + ++ +C + Q+ + Sbjct: 64 MVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQTSHNPAEDLQKCESKIKQKMIK 123 Query: 120 AIIVSTSLPPEHPFYQRWANDPFPIVALDRALDR-EHFTSVVGADQDDAEMLAEELRKFP 178 II+ +S P + F+ + P+V + + + H SV + D+ L + L + Sbjct: 124 GIIMLSS-PADESFFAQLDKYDIPVVVIGKVEGQYAHVYSVDTDNFGDSIALTDALIESG 182 Query: 179 AETVLYLGALPELSVSFLREQGFRTAWKDDPREVH--FLYANSYEREAAAQLFEKWLETH 236 + + L A ++ VS R G++ + V ++ Y E A + + L Sbjct: 183 HQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRDEWIVDGGYTHETALKAARQLLSQS 242 Query: 237 PMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCP 285 P+P+A+F T L + ++ +P LA+ + NE L F+ P Sbjct: 243 PLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAVVGY-SNETLSFILTP 290 >b1658 transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (purR) {Escherichia coli K12-MG1655} Length = 341 Score = 82.8 bits (203), Expect = 3e-017 Identities = 74/332 (22%), Positives = 145/332 (43%), Gaps = 8/332 (2%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 + ++A+ A VS TT S+VIN K V+++T V A ++E +Y P+AVA L+ T+ Sbjct: 4 IKDVAKRANVSTTTVSHVIN---KTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK 60 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 SIGL+ E + I +E+ Q+GY L++ + + + + + + Q++VD ++ Sbjct: 61 SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL 120 Query: 123 VSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEE--LRKFPAE 180 V S PE P+V +D + FT V + + +A + + E Sbjct: 121 VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE 180 Query: 181 TVLYLGALPELSVSFLREQGFRTAWKDDPREV--HFLYANSYEREAAAQLFEKWLETHPM 238 + G L E + R GF A ++ +V ++ +E E+ + ++ L Sbjct: 181 IGVIPGPL-ERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHR 239 Query: 239 PQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAE 298 P A+F + G + ++P D+++ + + + + + Q + E Sbjct: 240 PTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGE 299 Query: 299 RVLEIVLASLDEPRKPKPGLTRIKRNLYRRGV 330 ++L + R+ + R + RR V Sbjct: 300 TAFNMLLDRIVNKREEPQSIEVHPRLIERRSV 331 >b3934 regulator for deo operon, udp, cdd, tsx, nupC, and nupG (cytR) {Escherichia coli K12-MG1655} Length = 341 Score = 79.0 bits (193), Expect = 4e-016 Identities = 72/312 (23%), Positives = 137/312 (43%), Gaps = 20/312 (6%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 + ++A A VS T S + K VS T +V RE Y P + ++ +R Sbjct: 12 MKDVALKAKVSTATVSRALMNPDK---VSQATRNRVEKAAREVGYLPQPMGRNVKRNESR 68 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 +I +++PD+ + ++ I +E A GY +LI Q E I+ ++ +Q+D ++ Sbjct: 69 TILVIVPDICDPFFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGML 128 Query: 123 VSTSLPPEHPFYQRWANDPFPIVALDRALDRE----HFTSVVGADQDDAEMLAEELRKFP 178 + S P + N P ++A + A + E H ++ A D L E+ K Sbjct: 129 LLGSRLPFDASIEEQRNLPPMVMANEFAPELELPTVHIDNLTAA-FDAVNYLYEQGHK-- 185 Query: 179 AETVLYLGALPELSVSFLREQGFRTAWKD-----DPREVHFLYANSYEREAAAQLFEKWL 233 + + E+ + R QG+ A + DP+ ++ + EA ++ ++ L Sbjct: 186 --RIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQ---YIARGDFTFEAGSKAMQQLL 240 Query: 234 ETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRH 293 + P A+F S + G + R+ K+P DL+I F + +L F P+ +AQ Sbjct: 241 DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPR 300 Query: 294 RDVAERVLEIVL 305 ++ + ++L Sbjct: 301 YEIGREAMLLLL 312 >b2714 ascBF operon repressor (ascG) {Escherichia coli K12-MG1655} Length = 337 Score = 76.6 bits (187), Expect = 2e-015 Identities = 75/304 (24%), Positives = 133/304 (43%), Gaps = 10/304 (3%) Query: 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSI 64 E+A+ AGVS+ T S V++G VS +T ++V V E Y PN +A L A T+++ Sbjct: 7 EVAKRAGVSKATVSRVLSGNGY---VSQETKDRVFQAVEESGYRPNLLARNLSAKSTQTL 63 Query: 65 GLVIPD--LENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 GLV+ + ++ + + R A ++G QLL+A + + E + I++LL + DAI+ Sbjct: 64 GLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIM 123 Query: 123 VSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETV 182 + PI+ L+R L + SV + + EL + + Sbjct: 124 IYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELINAGHQEI 183 Query: 183 LYLGALPELSVSFLREQGFRTAWKDDPREVH-FLYAN-SYEREAAAQLFEKWLETHPMPQ 240 +L + S R G++ A ++ L AN + + A+ E LE Sbjct: 184 AFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFS 243 Query: 241 ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV 300 AL ++ + G M R +P +++ F D + + V A++ V E + Sbjct: 244 ALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDIAIAPY---TVPALSSVKIPVTEMI 300 Query: 301 LEIV 304 EI+ Sbjct: 301 QEII 304 >b4264 L-idonate transcriptional regulator (idnR) {Escherichia coli K12-MG1655} Length = 332 Score = 75.5 bits (184), Expect = 5e-015 Identities = 78/319 (24%), Positives = 138/319 (43%), Gaps = 25/319 (7%) Query: 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR 60 + L +IA LAGV++ T S I K V+ +T E++ ++ E NY PN L + Sbjct: 6 ISLQDIATLAGVTKMTVSRYIRSPKK---VAKETGERIAKIMEEINYIPNRAPGMLLNAQ 62 Query: 61 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA 120 + ++G++IP +N + I +E + YQ LIA D+E + +LL +D Sbjct: 63 SYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDG 122 Query: 121 IIVSTSLPPEHPF-YQRWANDPFPIVALDRALDREHFTSVVGADQDDA--EMLAEELRKF 177 II+S + R A P+V L + E VG D A +M+ L K Sbjct: 123 IILSEKYHTIRTVKFLRSAT--IPVVEL-MDVQGERLDMEVGFDNRQAAFDMVCTMLEKR 179 Query: 178 PAETVLYLGALPELSVSFLREQGFRTAW--------KDDPREVHFLYANSYEREAAAQLF 229 +LYLG+ + + R QG+ A + +PR + ++ QL Sbjct: 180 VRHKILYLGSKDD-TRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIH-------LGMQLM 231 Query: 230 EKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAV 289 L +P +F T+ + G + + R+ +P ++IA F E+ + + +V Sbjct: 232 RDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASV 291 Query: 290 AQRHRDVAERVLEIVLASL 308 D+ +++L+ + Sbjct: 292 ITPRFDIGRMAAQMLLSKI 310 >b2837 repressor of galETK operon (galR) {Escherichia coli K12-MG1655} Length = 343 Score = 68.2 bits (165), Expect = 8e-013 Identities = 76/324 (23%), Positives = 134/324 (41%), Gaps = 14/324 (4%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 + ++ARLAGVS T S VIN K S V M + +YHPNA A L T Sbjct: 4 IKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESL---SYHPNANARALAQQTTE 60 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 ++GLV+ D+ + + + +E+ A G LLI E + IE L++ + A++ Sbjct: 61 TVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQKERQAIEQLIRHRCAALV 120 Query: 123 VSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETV 182 V + P+ P +V ++R L + D+ A + L + + Sbjct: 121 VHAKMIPDADLASLMKQMP-GMVLINRILPGFENRCIALDDRYGAWLATRHLIQQGHTRI 179 Query: 183 LYLGALPELSVSFLREQGFRTAWKD-----DPREVHFLYANSYEREAAAQLFEKWLETHP 237 YL + +S + R QG+ A + + R V F + Q + L Sbjct: 180 GYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTF---GEPDESGGEQAMTELLGRGR 236 Query: 238 MPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVA 297 A+ + ++ G M V +P ++++ F D + +++ + V +A Sbjct: 237 NFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVLVSRYVRPRLTTVRYPIVTMA 296 Query: 298 ERVLEIVLASLDEPRKPKPGLTRI 321 + E+ LA D +P P +T + Sbjct: 297 TQAAELALALAD--NRPLPEITNV 318 >b2151 mgl repressor, galactose operon inducer (galS) {Escherichia coli K12-MG1655} Length = 346 Score = 66.2 bits (160), Expect = 3e-012 Identities = 71/304 (23%), Positives = 129/304 (42%), Gaps = 8/304 (2%) Query: 5 EIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTRSI 64 ++AR AGVS T S V+N VS T E VM V E +Y PNA A L + +I Sbjct: 6 DVARQAGVSVATVSRVLNNSTL---VSADTREAVMKAVSELDYRPNANAQALATQVSDTI 62 Query: 65 GLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVS 124 G+V+ D+ + + + ++ A+Q +LI S + + E IE L++++ +A+IV Sbjct: 63 GVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVH 122 Query: 125 TSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETVLY 184 + + Q N P +V ++R + V + A M L + + Y Sbjct: 123 SKALSDDELAQFMDNIP-GMVLINRVVPGYAHRCVCLDNLSGARMATRMLLNNGHQRIGY 181 Query: 185 LGALPELSVSFLREQGFRTAWKDD---PREVHFLYANSYEREAAAQLFEKWLETHPMPQA 241 L + + +R+ G+ +A K+ P E ++ A + + + L + A Sbjct: 182 LSSSHGIEDDAMRKAGWMSALKEQDIIPPE-SWIGAGTPDMPGGEAAMVELLGRNLQLTA 240 Query: 242 LFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERVL 301 +F + + G + +P L+I F D + + + V +A+ Sbjct: 241 VFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIPIARYTDPQLTTVRYPIASMAKLAT 300 Query: 302 EIVL 305 E+ L Sbjct: 301 ELAL 304 >b3438 regulator of gluconate (gnt) operon (gntR) {Escherichia coli K12-MG1655} Length = 313 Score = 63.5 bits (153), Expect = 2e-011 Identities = 79/324 (24%), Positives = 141/324 (43%), Gaps = 36/324 (11%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 L ++A GV++ T S + + VS K+ A + E Y PN L +R Sbjct: 8 LQDVADRVGVTKMTVSRFLRNPEQ---VSVALRGKIAAALDELGYIPNRAPDILSNATSR 64 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 +IG+++P L N + + +E GYQ ++A +P+ E +E +L +D +I Sbjct: 65 AIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLI 124 Query: 123 VS--TSLPPEHPFYQRWANDPFPIV--------ALDRALDREHFTSVVGADQDDAEMLAE 172 ++ T P + P+V LD A+ ++F + A Q ++A Sbjct: 125 LTERTHTPRTLKMIEVAG---IPVVELMDSKSPCLDIAVGFDNFEA---ARQMTTAIIAR 178 Query: 173 ELRKFPAETVLYLGA-LPELSVSFLREQGFRTAWKDD---PREVHFLYANSYEREAAAQL 228 R + YLGA L E ++ ++++G+ A D P V ++SY + +L Sbjct: 179 GHRH-----IAYLGARLDERTI--IKQKGYEQAMLDAGLVPYSVMVEQSSSYS--SGIEL 229 Query: 229 FEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQ---CP 285 + +P +F T+ L G R K+P D+AIA F +++ ++ Sbjct: 230 IRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLAS 289 Query: 286 VLAVAQRHRDV-AERVLEIVLASL 308 VL +R + AER + +A+L Sbjct: 290 VLTPRERMGSIGAERCWRVFVANL 313 >b1620 repressor of malX and Y genes (malI) {Escherichia coli K12-MG1655} Length = 342 Score = 62.8 bits (151), Expect = 3e-011 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 3/184 (1%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 + ++A AGVS +T S V++GK R+S T E+V A + E + N A+ LR G++ Sbjct: 9 IHDVALAAGVSVSTVSLVLSGKG---RISTATGERVNAAIEELGFVRNRQASALRGGQSG 65 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 IGL++ DL Y + L +G + + + + LL + VD ++ Sbjct: 66 VIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHGGKDGEQLAQRFSLLLNQGVDGVV 125 Query: 123 VSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAETV 182 ++ + + P++ RA + +V + A++L E L + + + Sbjct: 126 IAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVDTVRPDNMQAAQLLTEHLIRNGHQRI 185 Query: 183 LYLG 186 +LG Sbjct: 186 AWLG 189 >b0345 transcriptional repressor of the lac operon (lacI) {Escherichia coli K12-MG1655} Length = 360 Score = 60.1 bits (144), Expect = 2e-010 Identities = 69/305 (22%), Positives = 128/305 (41%), Gaps = 7/305 (2%) Query: 3 LDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGRTR 62 L ++A AGVS T S V+N + VS KT EKV A + E NY PN VA L ++ Sbjct: 6 LYDVAEYAGVSYQTVSRVVNQAS---HVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSL 62 Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEH-LLQRQVDAI 121 IG+ L + ++I ++ +A Q G ++++ E + H LL ++V + Sbjct: 63 LIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGL 122 Query: 122 IVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAET 181 I++ L + A P + LD D+ S++ + +D + E L + Sbjct: 123 IINYPLDDQDAIAVEAACTNVPALFLD-VSDQTPINSIIFSHEDGTRLGVEHLVALGHQQ 181 Query: 182 V-LYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPMPQ 240 + L G L +S LR G+ + + + + Q + L +P Sbjct: 182 IALLAGPLSSVSAR-LRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPT 240 Query: 241 ALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDNELLDFLQCPVLAVAQRHRDVAERV 300 A+ + + G M ++ +D+++ + D E P+ + Q R + + Sbjct: 241 AMLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTS 300 Query: 301 LEIVL 305 ++ +L Sbjct: 301 VDRLL 305 >b4241 repressor of treA,B,C (treR) {Escherichia coli K12-MG1655} Length = 315 Score = 58.5 bits (140), Expect = 6e-010 Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 8/186 (4%) Query: 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRAGR 60 + + +IARL+GV ++T S V+N ++ VS T E+V AV+ +H + P+ A +R Sbjct: 5 LTIKDIARLSGVGKSTVSRVLNNESG---VSQLTRERVEAVMNQHGFSPSRSARAMRGQS 61 Query: 61 TRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDA 120 + + +++ L++ S + ++GY ++ S+ P + L +R +D Sbjct: 62 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDG 121 Query: 121 IIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVVGADQDDAEMLAEELRKFPAE 180 +++ W + +V L R D + F SV D+ ++L + L Sbjct: 122 VVLFGFTGITEEMLAHWQSS---LVLLAR--DAKGFASVCYDDEGAIKILMQRLYDQGHR 176 Query: 181 TVLYLG 186 + YLG Sbjct: 177 NISYLG 182 >b3751 D-ribose periplasmic binding protein (rbsB) {Escherichia coli K12-MG1655} Length = 296 Score = 48.1 bits (113), Expect = 8e-007 Identities = 46/215 (21%), Positives = 93/215 (43%), Gaps = 7/215 (3%) Query: 63 SIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAII 122 +I LV+ L N + + + +++A + GY L++ S++ P E+ ++ L R ++ Sbjct: 28 TIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILL 87 Query: 123 VSTSLPPEHPFYQRWANDP-FPIVALDRALDREHFTSVVGADQD-DAEMLAEELRKFPAE 180 ++ + + AN P++ LDR + S + +D ++ + + K E Sbjct: 88 INPTDSDAVGNAVKMANQANIPVITLDRQATKGEVVSHIASDNVLGGKIAGDYIAKKAGE 147 Query: 181 --TVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYANSYEREAAAQLFEKWLETHPM 238 V+ L + S + R +GF+ A V ++R + + L HP Sbjct: 148 GAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLNVMQNLLTAHPD 207 Query: 239 PQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATF 273 QA+F + + G + L+ GK SD+ + F Sbjct: 208 VQAVFAQNDEMALGALR-ALQTAGK--SDVMVVGF 239 Query= Z0091 orf, hypothetical protein (yabB) {Escherichia coli O157:H7 EDL933} (152 letters) Score E Sequences producing significant alignments: (bits) Value b0081 orf, hypothetical protein (yabB) {Escherichia coli K12-MG1... 305 7e-085 >b0081 orf, hypothetical protein (yabB) {Escherichia coli K12-MG1655} Length = 152 Score = 305 bits (782), Expect = 7e-085 Identities = 151/152 (99%), Positives = 152/152 (100%) Query: 1 MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPCLLLYPLPEWEIIEQKL 60 MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDI+HPCLLLYPLPEWEIIEQKL Sbjct: 1 MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIYHPCLLLYPLPEWEIIEQKL 60 Query: 61 SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW 120 SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW Sbjct: 61 SRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHAGLTKEVMLVGQFNKFELW 120 Query: 121 DETTWHQQVKEDIDAEQLATGDLSERLQDLSL 152 DETTWHQQVKEDIDAEQLATGDLSERLQDLSL Sbjct: 121 DETTWHQQVKEDIDAEQLATGDLSERLQDLSL 152 Query= Z0092 putative apolipoprotein (yabC) {Escherichia coli O157:H7 EDL933} (313 letters) Score E Sequences producing significant alignments: (bits) Value b0082 putative apolipoprotein (yabC) {Escherichia coli K12-MG1655} 582 e-168 >b0082 putative apolipoprotein (yabC) {Escherichia coli K12-MG1655} Length = 313 Score = 582 bits (1501), Expect = e-168 Identities = 299/313 (95%), Positives = 299/313 (95%) Query: 1 MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA 60 MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA Sbjct: 1 MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQA 60 Query: 61 IAVAKTIDDPRFSIIHGPFSALGEYVAERXXXXXXXXXXXXXXVSSPQLDDAERGFSFMR 120 IAVAKTIDDPRFSIIHGPFSALGEYVAER VSSPQLDDAERGFSFMR Sbjct: 61 IAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMR 120 Query: 121 DGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRT 180 DGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRT Sbjct: 121 DGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRT 180 Query: 181 KELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIIS 240 KELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIIS Sbjct: 181 KELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIIS 240 Query: 241 FHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRA 300 FHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRA Sbjct: 241 FHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQLRALGKLMPGEEEVAENPRA 300 Query: 301 RSSVLRIAERTNA 313 RSSVLRIAERTNA Sbjct: 301 RSSVLRIAERTNA 313 Query= Z0093 cell division protein ingrowth of wall at (ftsL) {Escherichia coli O157:H7 EDL933} (121 letters) Score E Sequences producing significant alignments: (bits) Value b0083 cell division protein; ingrowth of wall at septum (ftsL) {... 198 7e-053 >b0083 cell division protein; ingrowth of wall at septum (ftsL) {Escherichia coli K12-MG1655} Length = 121 Score = 198 bits (504), Expect = 7e-053 Identities = 103/121 (85%), Positives = 103/121 (85%) Query: 1 MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFICIIXXXXXXXXXXXXX 60 MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFICII Sbjct: 1 MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFICIILTAVTVVTTAHHT 60 Query: 61 XXXXXQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ 120 QREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ Sbjct: 61 RLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIATEKLQMQHVDPSQENIVVQ 120 Query: 121 K 121 K Sbjct: 121 K 121 Query= Z0094 septum formation penicillin-binding protein 3; peptidoglycan synthetase (ftsI) {Escherichia coli O157:H7 EDL933} (588 letters) Score E Sequences producing significant alignments: (bits) Value b0084 septum formation; penicillin-binding protein 3; peptidogly... 1120 0.0 b0635 cell elongation, e phase; peptidoglycan synthetase; penici... 135 6e-033 >b0084 septum formation; penicillin-binding protein 3; peptidoglycan synthetase (ftsI) {Escherichia coli K12-MG1655} Length = 588 Score = 1120 bits (2896), Expect = 0.0 Identities = 571/588 (97%), Positives = 571/588 (97%) Query: 1 MKAAAKTQKPKRQEEHANFISWRXXXXXXXXXXXXXXXXXRVAWLQVISPDMLVKEGDMR 60 MKAAAKTQKPKRQEEHANFISWR RVAWLQVISPDMLVKEGDMR Sbjct: 1 MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR 60 Query: 61 SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP 120 SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP Sbjct: 61 SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIP 120 Query: 121 LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG 180 LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG Sbjct: 121 LDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIHLREESRRYYPSGEVTAHLIG 180 Query: 181 FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL 240 FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL Sbjct: 181 FTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVIEDISSTDSQAAHNLALSIDERL 240 Query: 241 QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT 300 QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT Sbjct: 241 QALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMANSPSYNPNNLSGTPKEAMRNRTIT 300 Query: 301 DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS 360 DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS Sbjct: 301 DVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPYRINGHEIKDVARYSELTLTGVLQKSS 360 Query: 361 NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG 420 NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG Sbjct: 361 NVGVSKLALAMPSSALVDTYSRFGLGKATNLGLVGERSGLYPQKQRWSDIERATFSFGYG 420 Query: 421 LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG 480 LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG Sbjct: 421 LMVTPLQLARVYATIGSYGIYRPLSITKVDPPVPGERVFPESIVRTVVHMMESVALPGGG 480 Query: 481 GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY 540 GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY Sbjct: 481 GVKAAIKGYRIAIKTGTAKKVGPDGRYINKYIAYTAGVAPASQPRFALVVVINDPQAGKY 540 Query: 541 YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS 588 YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS Sbjct: 541 YGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKNEFVINQGEGTGGRS 588 >b0635 cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2 (mrdA) {Escherichia coli K12-MG1655} Length = 633 Score = 135 bits (341), Expect = 6e-033 Identities = 148/587 (25%), Positives = 248/587 (42%), Gaps = 102/587 (17%) Query: 62 LRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAGGISVGDRWKALANALNIPL 121 +++ ++ SRG+I DR+G PLA++ + I P++V + V AL + +++ Sbjct: 59 IKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDN-----VQQTLDALRSVVDLTD 113 Query: 122 DQLSA-RINANPKGRFIYLARQVNPDMADY----IKKLKLPGIHLREESRRYYPSGEVTA 176 D ++A R RF + + N + + + PG+ ++ RRYYP G Sbjct: 114 DDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKGYKRRYYPYGSALT 173 Query: 177 HLIGFTN-VDSQGIE--------------------GVEKSFDKWLTGQPGERIVRKDRYG 215 H+IG+ + ++ + +E G+E+ ++ L GQ G V + G Sbjct: 174 HVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVLHGQTGYEEVEVNNRG 233 Query: 216 RVIEDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAM 275 RVI + QA H++ L++D +LQ + L + A + V+ D TG VLA+ Sbjct: 234 RVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRA-------AVVVTDPRTGGVLAL 286 Query: 276 ANSPSYNPN------------NLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVV 323 ++PSY+PN L P + NR V+ P STVKP V ++AL GV+ Sbjct: 287 VSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKPYVAVSALSAGVI 346 Query: 324 RENSVL-NTIPYRINGHE--IKDVAR--YSELTLTGVLQKSSNVGVSKLALAMPSSALVD 378 N+ L + +++ G E +D + + L +T L++S++ ++A M L + Sbjct: 347 TRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFFYQVAYDMGIDRLSE 406 Query: 379 TYSRFGLGKATNLGLVGERSGLYPQ--------KQRWSDIERATFSFGYGL-MVTPLQLA 429 +FG G T + L ERSG P K+ W + G G TP+Q++ Sbjct: 407 WMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIPVGIGQGYWTATPIQMS 466 Query: 430 RVYATIGSYGIYR-----------PLSITKVDPPVPGERVFPESIVRTVVHMMESVA-LP 477 + + + GI + + V P P M VA P Sbjct: 467 KALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIHSGYWELAKDGMYGVANRP 526 Query: 478 GGGGVK-AAIKGYRIAIKTGTAKKVG--PDGRYINKYIA-------YTAGVAPASQPRFA 527 G K A Y+IA K+GTA+ G + Y IA AP + P+ A Sbjct: 527 NGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAERLRDHKLMTAFAPYNNPQVA 586 Query: 528 LVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPDALTTGDKN 574 + +++ + AG P G +M +L D + GD N Sbjct: 587 VAMILENGGAG---------PAVGTLMRQIL-------DHIMLGDNN 617 Query= Z0095 meso-diaminopimelate-adding enzyme (murE) {Escherichia coli O157:H7 EDL933} (495 letters) Score E Sequences producing significant alignments: (bits) Value b0085 meso-diaminopimelate-adding enzyme (murE) {Escherichia col... 872 0.0 >b0085 meso-diaminopimelate-adding enzyme (murE) {Escherichia coli K12-MG1655} Length = 495 Score = 872 bits (2253), Expect = 0.0 Identities = 441/495 (89%), Positives = 441/495 (89%) Query: 1 MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYXXXXXXXXX 60 MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRY Sbjct: 1 MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV 60 Query: 61 XXXXXXXKGEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLXXXXXXXXXXX 120 K EATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNL Sbjct: 61 AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK 120 Query: 121 XXXXQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQDATFC 180 QLLAQWSQLLGE SAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQ ATFC Sbjct: 121 TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC 180 Query: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN Sbjct: 181 AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN 240 Query: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE Sbjct: 241 ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE 300 Query: 301 SHLMGAFNVSNXXXXXXXXXXXXXXXXXXXKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 SHLMGAFNVSN KTAARLQPVCGRMEVFTAPGKPTVVVDYAH Sbjct: 301 SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH 360 Query: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE 420 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE Sbjct: 361 TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE 420 Query: 421 PRAIINDILAGMLDAGHAKVMEDRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD 480 PRAIINDILAGMLDAGHAKVME RAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD Sbjct: 421 PRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD 480 Query: 481 YSDRVTVARLLGVIA 495 YSDRVTVARLLGVIA Sbjct: 481 YSDRVTVARLLGVIA 495 Query= Z0096 D-alanine:D-alanine-adding enzyme (murF) {Escherichia coli O157:H7 EDL933} (452 letters) Score E Sequences producing significant alignments: (bits) Value b0086 D-alanine:D-alanine-adding enzyme (murF) {Escherichia coli... 832 0.0 b0085 meso-diaminopimelate-adding enzyme (murE) {Escherichia col... 46 6e-006 >b0086 D-alanine:D-alanine-adding enzyme (murF) {Escherichia coli K12-MG1655} Length = 452 Score = 832 bits (2148), Expect = 0.0 Identities = 430/452 (95%), Positives = 431/452 (95%) Query: 1 MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAG 60 MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAG Sbjct: 1 MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAG 60 Query: 61 GAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAA 120 GAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAA Sbjct: 61 GAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARVVALTGSSGKTSVKEMTAA 120 Query: 121 ILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIVWTVSLTRPEXXX 180 ILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEI WTVSLTRPE Sbjct: 121 ILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELGANHQGEIAWTVSLTRPEAAL 180 Query: 181 XXXXXXXHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 HLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFS Sbjct: 181 VNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNWQSVIGSRKVWRFS 240 Query: 241 PNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIXXXXXXXXXSMSVGATL 300 PNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNI SMSVGATL Sbjct: 241 PNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIANALAAAALSMSVGATL 300 Query: 301 DAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGD 360 DAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGD Sbjct: 301 DAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGD 360 Query: 361 MAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFAEKTALITRLKSL 420 MAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFA+KTALITRLK L Sbjct: 361 MAELGAESEACHVQVGEAAKAAGIDRVLSVGKQSHAISTASGVGEHFADKTALITRLKLL 420 Query: 421 IAEQQVITILVKGSRSAAMEEVVRALQENGTC 452 IAEQQVITILVKGSRSAAMEEVVRALQENGTC Sbjct: 421 IAEQQVITILVKGSRSAAMEEVVRALQENGTC 452 >b0085 meso-diaminopimelate-adding enzyme (murE) {Escherichia coli K12-MG1655} Length = 495 Score = 45.8 bits (107), Expect = 6e-006 Identities = 67/325 (20%), Positives = 119/325 (36%), Gaps = 34/325 (10%) Query: 24 LDAVTTDTRKLTPGCLFVALKGERFDAHDFADQAKAGGAGALLVSRPLDI---------D 74 L +T D+R G LFVA+ G + D + QA A G A++ + Sbjct: 22 LREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHG 81 Query: 75 LPQLIVKDTRLAFGELAA--WVRQQVPARVVALTGSSGKTSVKEMTA----------AIL 122 +P + + LA + R+V +TG++GKT+ ++ A A++ Sbjct: 82 VPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVM 141 Query: 123 SQCGNTLY-----TAGNLNNDIGVPMTLLRLTPE-YDYAVIELGANHQGEIVWTVSLTRP 176 GN L T + + V L L + + +E+ ++ G + V+ + Sbjct: 142 GTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH--GLVQHRVAALKF 199 Query: 177 EXXXXXXXXXXHLEGFGSLAGVAKAKGEIFSGLPENGIAIMNADNNDWLNW----QSVIG 232 HL+ G + AK ++S G AI+NAD+ W + Sbjct: 200 AASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVA 258 Query: 233 SRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLPLPGRHNIXXXXXXXXX 292 +PN AT ++ G + G ++ L G N+ Sbjct: 259 VSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALAT 318 Query: 293 SMSVGATLDAIKAGLANLKAVPGRL 317 +++G L + A L+ V GR+ Sbjct: 319 LLALGYPLADLLKTAARLQPVCGRM 343 Query= Z0097 phospho-N-acetylmuramoyl-pentapeptide transferase? (mraY) {Escherichia coli O157:H7 EDL933} (360 letters) Score E Sequences producing significant alignments: (bits) Value b0087 phospho-N-acetylmuramoyl-pentapeptide transferase? (mraY) ... 638 0.0 >b0087 phospho-N-acetylmuramoyl-pentapeptide transferase? (mraY) [2.7.8.13] {Escherichia coli K12-MG1655} Length = 360 Score = 638 bits (1645), Expect = 0.0 Identities = 323/360 (89%), Positives = 323/360 (89%) Query: 1 MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRND 60 MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRND Sbjct: 1 MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRMIAHLQKLSFGQVVRND 60 Query: 61 GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYXXXXXXXXXXXXXXXXXDDYRKV 120 GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPY DDYRKV Sbjct: 61 GPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVLVVLVGYGVIGFVDDYRKV 120 Query: 121 VRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATQLVVPFFKDVMPQLGLFYILLA 180 VRKDTKGLIARWKYFWMSVIALGVAFALYL GKDTPATQLVVPFFKDVMPQLGLFYILLA Sbjct: 121 VRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQLVVPFFKDVMPQLGLFYILLA 180 Query: 181 YFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELV 240 YFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELV Sbjct: 181 YFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWATGNMNFASYLHIPYLRHAGELV 240 Query: 241 IVCTAIVGAGLGFLWFNTYPAQVFMXXXXXXXXXXXXXXXXXXXRQEFLLVIMGGVFVVE 300 IVCTAIVGAGLGFLWFNTYPAQVFM RQEFLLVIMGGVFVVE Sbjct: 241 IVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGALGIIAVLLRQEFLLVIMGGVFVVE 300 Query: 301 TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR 360 TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR Sbjct: 301 TLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWPEPRVIVRFWIISLMLVLIGLATLKVR 360 Query= Z0098 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) {Escherichia coli O157:H7 EDL933} (438 letters) Score E Sequences producing significant alignments: (bits) Value b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) [6.3... 773 0.0 b0091 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine lig... 50 4e-007 >b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) [6.3.2.9] {Escherichia coli K12-MG1655} Length = 438 Score = 773 bits (1995), Expect = 0.0 Identities = 397/438 (90%), Positives = 397/438 (90%) Query: 1 MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND 60 MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND Sbjct: 1 MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND 60 Query: 61 EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT 120 EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT Sbjct: 61 EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT 120 Query: 121 TLVGEMAKAAXXXXXXXXXXXLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV 180 TLVGEMAKAA LPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV Sbjct: 121 TLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV 180 Query: 181 TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL 240 TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL Sbjct: 181 TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL 240 Query: 241 NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNXXXXXXXXXXXXXPRASSLKALTTFTGL 300 NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTN PRASSLKALTTFTGL Sbjct: 241 NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGL 300 Query: 301 PHRFEVVLEHNGVRWINDSKATNVGSTEAALNXXXXXXXXXXXXXXXXKSADFSPLARYL 360 PHRFEVVLEHNGVRWINDSKATNVGSTEAALN KSADFSPLARYL Sbjct: 301 PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYL 360 Query: 361 NGDNVRLYCFGRDGVQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF 420 NGDNVRLYCFGRDG QLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF Sbjct: 361 NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF 420 Query: 421 KNFEQRGNEFARLAKELG 438 KNFEQRGNEFARLAKELG Sbjct: 421 KNFEQRGNEFARLAKELG 438 >b0091 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase (murC) [6.3.2.8] {Escherichia coli K12-MG1655} Length = 491 Score = 49.7 bits (117), Expect = 4e-007 Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 13/256 (5%) Query: 66 ADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPI-VAITGSNGKSTVTTLVG 124 A ++V S I+ +P + AA +A I ++ E+ + +AI G++GK+T T +V Sbjct: 79 ASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVS 138 Query: 125 EM-AKAAXXXXXXXXXXXLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNVTED 183 + A+A A + Y++ + + LQ + A + N+ D Sbjct: 139 SIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEAD 198 Query: 184 HMDRYPFGLQQYRAA------KLRIYENAKVCVVNADDALTMPIRGADERCVSFG----V 233 HMD Y + + L Y A +CV + +P G F V Sbjct: 199 HMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADV 258 Query: 234 NMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNXXXXXXXXXXXXXPRASSLKA 293 + DY QG L + ++ + V + G+HN N + L+A Sbjct: 259 RVEDYQQIGPQGHFTLLRQDKEPMRV-TLNAPGRHNALNAAAAVAVATEEGIDDEAILRA 317 Query: 294 LTTFTGLPHRFEVVLE 309 L +F G RF+ + E Sbjct: 318 LESFQGTGRRFDFLGE 333 Query= Z0099 cell division membrane protein involved in shape (ftsW) {Escherichia coli O157:H7 EDL933} (414 letters) Score E Sequences producing significant alignments: (bits) Value b0089 cell division; membrane protein involved in shape determin... 692 0.0 b0634 rod shape-determining membrane protein; sensitivity to rad... 139 3e-034 >b0089 cell division; membrane protein involved in shape determination (ftsW) {Escherichia coli K12-MG1655} Length = 414 Score = 692 bits (1785), Expect = 0.0 Identities = 358/414 (86%), Positives = 358/414 (86%) Query: 1 MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGF 60 MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGF Sbjct: 1 MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMYDRTLLWLTFGLAAIGF 60 Query: 61 IMVTSASMPIGQRLTNDPFFFAKRDGVYXXXXXXXXXXXXXXPMEFWQRYSATMLLGSII 120 IMVTSASMPIGQRLTNDPFFFAKRDGVY PMEFWQRYSATMLLGSII Sbjct: 61 IMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRLPMEFWQRYSATMLLGSII 120 Query: 121 LLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLK 180 LLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLK Sbjct: 121 LLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIANYLVRKGDEVRNNLRGFLK 180 Query: 181 PMGVIXXXXXXXXXQPDLGXXXXXXXXXXXXXXXXGAKLWQFIAIIGMGISAVVLLILAE 240 PMGVI QPDLG GAKLWQFIAIIGMGISAVVLLILAE Sbjct: 181 PMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAKLWQFIAIIGMGISAVVLLILAE 240 Query: 241 PYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIF 300 PYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIF Sbjct: 241 PYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQGLGNSVQKLEYLPEAHTDFIF 300 Query: 301 AIIGEELGYXXXXXXXXXXXXXXXXXMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV 360 AIIGEELGY MSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV Sbjct: 301 AIIGEELGYVGVVLALLMVFFVAFRAMSIGRKALEIDHRFSGFLACSIGIWFSFQALVNV 360 Query: 361 GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR 414 GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR Sbjct: 361 GAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRIDYETRLEKAQAFVRGSR 414 >b0634 rod shape-determining membrane protein; sensitivity to radiation and drugs (mrdB) {Escherichia coli K12-MG1655} Length = 370 Score = 139 bits (350), Expect = 3e-034 Identities = 90/299 (30%), Positives = 150/299 (50%), Gaps = 10/299 (3%) Query: 103 PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYIAN 162 P ++ ++ + + IILL+ V G+ KGA RW+DLG++R QP+E+ K+++ +A Sbjct: 67 PPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVAR 126 Query: 163 YLVRKGDEVRNNLRGFLKPMGVIXXXXXXXXXQPDLGXXXXXXXXXXXXXXXXGAKLWQF 222 ++ R D +L+ + +I QPDLG G W+ Sbjct: 127 FINR--DVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLS-WRL 183 Query: 223 IAIIGMGISAVVLLI---LAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGELWGQ 279 I + + ++A + ++ L Y+ +RV +P DP G+GY + QS +A G G L G+ Sbjct: 184 IGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGK 243 Query: 280 G-LGNSVQKLEYLPEAHTDFIFAIIGEELGYXXXXXXXXXXXXXXXXXMSIGRKALEIDH 338 G L + +LE+LPE HTDFIFA++ EELG + I +A Sbjct: 244 GWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARA---QT 300 Query: 339 RFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIMMLLRI 397 F +A + + VN+G +G+LP G+ LPL+SYGGS+L+++ +++ I Sbjct: 301 TFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSI 359 Query= Z0100 UDP-N-acetylglucosamine:N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) {Escherichia coli O157:H7 EDL933} (355 letters) Score E Sequences producing significant alignments: (bits) Value b0090 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) py... 702 0.0 >b0090 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (murG) {Escherichia coli K12-MG1655} Length = 355 Score = 702 bits (1811), Expect = 0.0 Identities = 353/355 (99%), Positives = 353/355 (99%) Query: 1 MSAQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFI 60 MS QGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFI Sbjct: 1 MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKHGIEIDFI 60 Query: 61 RISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIP 120 RISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIP Sbjct: 61 RISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIP 120 Query: 121 VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGRE 180 VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGRE Sbjct: 121 VVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGNPVRTDVLALPLPQQRLAGRE 180 Query: 181 GPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKV 240 GPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKV Sbjct: 181 GPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQQSVEQAYAEAGQPQHKV 240 Query: 241 TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA 300 TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA Sbjct: 241 TEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEKAGA 300 Query: 301 AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRAARA 355 AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSR ARA Sbjct: 301 AKIIEQPQLSVDAVANTLAGWSRETLLTMAERARAASIPDATERVANEVSRVARA 355 Query= Z0101 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase (murC) {Escherichia coli O157:H7 EDL933} (491 letters) Score E Sequences producing significant alignments: (bits) Value b0091 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine lig... 902 0.0 b4233 putative ligase (yjfG) {Escherichia coli K12-MG1655} 108 6e-025 b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) [6.3... 49 7e-007 >b0091 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase (murC) [6.3.2.8] {Escherichia coli K12-MG1655} Length = 491 Score = 902 bits (2330), Expect = 0.0 Identities = 455/491 (92%), Positives = 456/491 (92%) Query: 1 MNTQQLAKLRSIVPEMRRVRHIHFVXXXXXXXXXXXEVLANEGYQISGSDLAPNPVTQQL 60 MNTQQLAKLRSIVPEMRRVRHIHFV EVLANEGYQISGSDLAPNPVTQQL Sbjct: 1 MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQL 60 Query: 61 MNLGATIYFNHRPENVRDXXXXXXXXXXXXDNPEIVAAHEARIPVIRRAEMLAELMRFRH 120 MNLGATIYFNHRPENVRD DNPEIVAAHEARIPVIRRAEMLAELMRFRH Sbjct: 61 MNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELMRFRH 120 Query: 121 GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDA 180 GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDA Sbjct: 121 GIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDA 180 Query: 181 SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL 240 SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL Sbjct: 181 SFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELL 240 Query: 241 PRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHXXXXXXXX 300 PRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRH Sbjct: 241 PRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPMRVTLNAPGRHNALNAAAA 300 Query: 301 XXXXTEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD 360 TEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD Sbjct: 301 VAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVD 360 Query: 361 ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGA 420 ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGA Sbjct: 361 ATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGEAPIPGA 420 Query: 421 DSRSLCRTIRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL 480 DSRSLCRTIRGRGKIDPILVPDPA+VAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL Sbjct: 421 DSRSLCRTIRGRGKIDPILVPDPARVAEMLAPVLTGNDLILVQGAGNIGKIARSLAEIKL 480 Query: 481 KPQTPEEEQHD 491 KPQTPEEEQHD Sbjct: 481 KPQTPEEEQHD 491 >b4233 putative ligase (yjfG) {Escherichia coli K12-MG1655} Length = 457 Score = 108 bits (271), Expect = 6e-025 Identities = 110/409 (26%), Positives = 168/409 (41%), Gaps = 59/409 (14%) Query: 92 NPEIVAAHEARIPVIRRAEMLAE-LMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTF 150 NP + A E IP + + L + ++R R +A+AGTHGKTTT M + I + G P F Sbjct: 75 NPCVEAVLEKNIPYMSGPQWLHDFVLRDRWVLAVAGTHGKTTTAGMATWILEQCGYKPGF 134 Query: 151 VNGGLVKAAGVHARLGHGRYLIAEADESD-------ASFLHLQPMVAIVTNIEADHMDTY 203 V GG+ V A LG + + EADE D + F+H P I+ N+E DH D + Sbjct: 135 VIGGVPGNFEVSAHLGESDFFVIEADEYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIF 194 Query: 204 QGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDY 263 D + +++ F + + +P GR + +D + +QT G + ++ Sbjct: 195 D-DLKAIQKQFHHLVRIVPGQGRIIWPENDINL--------KQTMAMGCWSEQEL----- 240 Query: 264 QQIGPQGHFTL--LRQDKEPMRVTLNAP----------GRHXXXXXXXXXXXXTEEGIDD 311 +G QGH+ L D V L+ G H G+ Sbjct: 241 --VGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLVGEHNMHNGLMAIAAARHVGVAP 298 Query: 312 EAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAG-W 370 AL SF RR + GE NG + DD+ HHPT + AT+ A R Sbjct: 299 ADAANALGSFINARRRLELRGE-----ANG----VTVYDDFAHHPTAILATLAALRGKVG 349 Query: 371 PDKNLVMLFQPHRFTRTRDL-YDDFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLC-RT 428 ++ + +P T + DD A L + D + +L+ PA P A+ C + Sbjct: 350 GTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQ--PA-HIPWQVAEVAEACVQP 406 Query: 429 IRGRGKIDPILVPDPAQVAEMLAPVLTGNDLILVQGAGNIGKIARSLAE 477 G +D + A+M+ D ILV G G I + L + Sbjct: 407 AHWSGDVDTL--------ADMVVKTAQPGDHILVMSNGGFGGIHQKLLD 447 >b0088 UDP-N-acetylmuramoylalanine-D-glutamate ligase (murD) [6.3.2.9] {Escherichia coli K12-MG1655} Length = 438 Score = 48.9 bits (115), Expect = 7e-007 Identities = 57/254 (22%), Positives = 98/254 (38%), Gaps = 35/254 (13%) Query: 92 NPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFV 151 +P + AA +A I ++ E+ + +AI G++GK+T T +V + AG++ Sbjct: 79 HPSLSAAADAGIEIVGDIELFCREAQAPI-VAITGSNGKSTVTTLVGEMAKAAGVN---- 133 Query: 152 NGGLVKAAGVHARLGHGRYLIAEADESDASFLH-----------LQPMVAIVTNIEADHM 200 GV +G ++ + DE + L LQ + A + N+ DHM Sbjct: 134 -------VGVGGNIGLPALMLLD-DECELYVLELSSFQLETTSSLQAVAATILNVTEDHM 185 Query: 201 DTYQGDFENLKQTFINFLHNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRV 260 D Y + + L Y A +CV + +P G F V + Sbjct: 186 DRYPFGLQQYRAA------KLRIYENAKVCVVNADDALTMPIRGADERCVSFG----VNM 235 Query: 261 EDYQQIGPQGHFTLLRQDKEPMRV-TLNAPGRHXXXXXXXXXXXXTEEGIDDEAILRALE 319 DY QG L + ++ + V + G+H G+ + L+AL Sbjct: 236 GDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALT 295 Query: 320 SFQGTGRRFDFLGE 333 +F G RF+ + E Sbjct: 296 TFTGLPHRFEVVLE 309 Query= Z0102 D-alanine-D-alanine ligase B, affects cell division (ddlB) {Escherichia coli O157:H7 EDL933} (306 letters) Score E Sequences producing significant alignments: (bits) Value b0092 D-alanine-D-alanine ligase B, affects cell division (ddlB)... 597 e-172 b0381 D-alanine-D-alanine ligase A (ddlA) [6.3.2.4] {Escherichia... 173 1e-044 >b0092 D-alanine-D-alanine ligase B, affects cell division (ddlB) [6.3.2.4] {Escherichia coli K12-MG1655} Length = 306 Score = 597 bits (1540), Expect = e-172 Identities = 304/306 (99%), Positives = 305/306 (99%) Query: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI Sbjct: 1 MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI 60 Query: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRV 120 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTR Sbjct: 61 ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRA 120 Query: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE Sbjct: 121 EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE 180 Query: 181 KWLSGPEFTVAILGEEILPSVRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 KWLSGPEFTVAILGEEILPS+RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL Sbjct: 181 KWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL 240 Query: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR Sbjct: 241 VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300 Query: 301 ILELAD 306 ILELAD Sbjct: 301 ILELAD 306 >b0381 D-alanine-D-alanine ligase A (ddlA) [6.3.2.4] {Escherichia coli K12-MG1655} Length = 364 Score = 173 bits (439), Expect = 1e-044 Identities = 98/253 (38%), Positives = 150/253 (59%), Gaps = 9/253 (3%) Query: 58 VFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 117 +F +HG GEDG+LQGML + LP+ GS V+ASA MDK +K L + AGL +AP++ L Sbjct: 102 IFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITL 161 Query: 118 TRVEFEKGLSDKQLAEI-SALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEE 176 TR + AE+ S LGLP+ VKP+ +GSSVG+SKV +E A+ LAF+ D + Sbjct: 162 TRA----NRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHK 217 Query: 177 VLIEKWLSGPEFTVAILGE---EILPSVRIQPSGTFYDYEAKYL-SDETQYFCPAGLEAS 232 V++E+ + G E A+LG + I + FY Y+ KY+ D + PA + Sbjct: 218 VIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPE 277 Query: 233 QEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGM 292 ++A+ ++A+ TLGC G R+DV L + + + E NT PG T+ S+ P + +G+ Sbjct: 278 INDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQASGL 337 Query: 293 SFSQLVVRILELA 305 ++ L+ R++ELA Sbjct: 338 GYTDLITRLIELA 350 Query= Z0103 cell division protein ingrowth of wall at (ftsQ) {Escherichia coli O157:H7 EDL933} (276 letters) Score E Sequences producing significant alignments: (bits) Value b0093 cell division protein; ingrowth of wall at septum (ftsQ) {... 488 e-139 >b0093 cell division protein; ingrowth of wall at septum (ftsQ) {Escherichia coli K12-MG1655} Length = 276 Score = 488 bits (1255), Expect = e-139 Identities = 246/265 (92%), Positives = 247/265 (93%) Query: 1 MSQAALNTRNSEEEVSSRRNNGTRLAGILFXXXXXXXXXXXXXXXXXXMEDAQRLPLSKL 60 MSQAALNTRNSEEEVSSRRNNGTRLAGILF MEDAQRLPLSKL Sbjct: 1 MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWVVLGWMEDAQRLPLSKL 60 Query: 61 VLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELK 120 VLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELK Sbjct: 61 VLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRKQWPDELK 120 Query: 121 IHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPMLYGPEGSANEVLQGYREMGQM 180 IHLVEYVPIARWNDQHMVDAEGNTFSVPP+RTSKQVLPMLYGPEGSANEVLQGYREMGQM Sbjct: 121 IHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPMLYGPEGSANEVLQGYREMGQM 180 Query: 181 LAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKR 240 LAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKR Sbjct: 181 LAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMKRLARFVELYPVLQQQAQTDGKR 240 Query: 241 ISYVDLRYDSGAAVGWAPLPPEEST 265 ISYVDLRYDSGAAVGWAPLPPEEST Sbjct: 241 ISYVDLRYDSGAAVGWAPLPPEEST 265 Query= Z0104 ATP-binding cell division protein, septation process, complexes (ftsA) {Escherichia coli O157:H7 EDL933} (420 letters) Score E Sequences producing significant alignments: (bits) Value b0094 ATP-binding cell division protein, septation process, comp... 828 0.0 >b0094 ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes (ftsA) {Escherichia coli K12-MG1655} Length = 420 Score = 828 bits (2140), Expect = 0.0 Identities = 420/420 (100%), Positives = 420/420 (100%) Query: 1 MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC 60 MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC Sbjct: 1 MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKGGVNDLESVVKC 60 Query: 61 VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR 120 VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR Sbjct: 61 VQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVR 120 Query: 121 VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL 180 VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL Sbjct: 121 VRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGL 180 Query: 181 KVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT 240 KVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT Sbjct: 181 KVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDIAVYTGGALRHTKVIPYAGNVVT 240 Query: 241 SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR 300 SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR Sbjct: 241 SDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRPPRSLQRQTLAEVIEPR 300 Query: 301 YTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 YTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA Sbjct: 301 YTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGA 360 Query: 361 PLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF 420 PLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF Sbjct: 361 PLNITGLTDYAQEPYYSTAVGLLHYGKESHLNGEAEVEKRVTASVGSWIKRLNSWLRKEF 420 Query= Z0105 cell division forms circumferential ring; tubulin-like GTP-binding (ftsZ) {Escherichia coli O157:H7 EDL933} (383 letters) Score E Sequences producing significant alignments: (bits) Value b0095 cell division; forms circumferential ring; tubulin-like GT... 635 0.0 >b0095 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase (ftsZ) {Escherichia coli K12-MG1655} Length = 383 Score = 635 bits (1639), Expect = 0.0 Identities = 337/383 (87%), Positives = 337/383 (87%) Query: 1 MFEPMELTNDAXXXXXXXXXXXXNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI 60 MFEPMELTNDA NAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI Sbjct: 1 MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNTDAQALRKTAVGQTIQI 60 Query: 61 GSGITKGLGAGANPEVGRNXXXXXXXXXXXXXXGADMVFIXXXXXXXXXXXXXXXXXXXX 120 GSGITKGLGAGANPEVGRN GADMVFI Sbjct: 61 GSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAAGMGGGTGTGAAPVVAEVA 120 Query: 121 KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD 180 KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD Sbjct: 121 KDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSLITIPNDKLLKVLGRGISLLD 180 Query: 181 AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA 240 AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA Sbjct: 181 AFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMSEMGYAMMGSGVASGEDRAEEAA 240 Query: 241 EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP 300 EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP Sbjct: 241 EMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFETVGNTIRAFASDNATVVIGTSLDP 300 Query: 301 DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND 360 DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND Sbjct: 301 DMNDELRVTVVATGIGMDKRPEITLVTNKQVQQPVMDRYQQHGMAPLTQEQKPVAKVVND 360 Query: 361 NAPQTAKEPDYLDIPAFLRKQAD 383 NAPQTAKEPDYLDIPAFLRKQAD Sbjct: 361 NAPQTAKEPDYLDIPAFLRKQAD 383 Query= Z0106 UDP-3-O-acyl N-acetylglucosamine deacetylase lipid A biosynthesis (lpxC) {Escherichia coli O157:H7 EDL933} (305 letters) Score E Sequences producing significant alignments: (bits) Value b0096 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A bios... 615 e-177 >b0096 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis (lpxC) {Escherichia coli K12-MG1655} Length = 305 Score = 615 bits (1585), Expect = e-177 Identities = 305/305 (100%), Positives = 305/305 (100%) Query: 1 MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT 60 MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT Sbjct: 1 MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDLNPPVDFPADAKSVRDT 60 Query: 61 MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI 120 MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI Sbjct: 61 MLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIPIMDGSAAPFVYLLLDAGI 120 Query: 121 DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD 180 DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD Sbjct: 121 DELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTIDFNHPAIDSSNQRYAMNFSAD 180 Query: 181 AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM 240 AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM Sbjct: 181 AFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVVDDYRVLNEDGLRFEDEFVRHKM 240 Query: 241 LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP 300 LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP Sbjct: 241 LDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVLAKQEAWEYVTFQDDAELPLAFKAP 300 Query: 301 SAVLA 305 SAVLA Sbjct: 301 SAVLA 305 Query= Z0107 orf, hypothetical protein (yacA) {Escherichia coli O157:H7 EDL933} (195 letters) Score E Sequences producing significant alignments: (bits) Value b0097 orf, hypothetical protein (yacA) {Escherichia coli K12-MG1... 374 e-105 >b0097 orf, hypothetical protein (yacA) {Escherichia coli K12-MG1655} Length = 195 Score = 374 bits (960), Expect = e-105 Identities = 181/195 (92%), Positives = 183/195 (93%) Query: 1 MLWTSGFNDKICALNTFEYDRDGNNVSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALS 60 MLWT+GFNDKICALNTFEYDRDGNNVSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALS Sbjct: 1 MLWTAGFNDKICALNTFEYDRDGNNVSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALS 60 Query: 61 NAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSF 120 NAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSF Sbjct: 61 NAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSF 120 Query: 121 AMAPQTLPVAEESLPLQAQHXXXXXXXXXXXXQEGTPSEKGYRIDYAHFTPQAKFSTPVW 180 AMAPQTLPVAEESLPLQAQH QEGTPSEKGYRIDYAHFTPQAKFSTPVW Sbjct: 121 AMAPQTLPVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVW 180 Query: 181 ISQAQGIRAGPQRLS 195 ISQAQGIRAGPQRL+ Sbjct: 181 ISQAQGIRAGPQRLT 195 Query= Z0108 preprotein translocase secretion protein (secA) {Escherichia coli O157:H7 EDL933} (901 letters) Score E Sequences producing significant alignments: (bits) Value b0098 preprotein translocase; secretion protein (secA) {Escheric... 1726 0.0 b1908 orf, hypothetical protein (yecA) {Escherichia coli K12-MG1... 49 1e-006 >b0098 preprotein translocase; secretion protein (secA) {Escherichia coli K12-MG1655} Length = 901 Score = 1726 bits (4469), Expect = 0.0 Identities = 881/901 (97%), Positives = 881/901 (97%) Query: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL Sbjct: 1 MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELKGKTAEFRARLEKGEVL 60 Query: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA Sbjct: 61 ENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEMRTGEGKTLTATLPAYLNA 120 Query: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN Sbjct: 121 LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNN 180 Query: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN Sbjct: 181 EYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVN 240 Query: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS Sbjct: 241 KIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYS 300 Query: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK Sbjct: 301 PANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAK 360 Query: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR Sbjct: 361 EGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIR 420 Query: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN Sbjct: 421 KDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLN 480 Query: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD Sbjct: 481 AKFHANEAAIVAQAGYPAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKAD 540 Query: 541 WQVRHDAVLAAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 600 WQVRHDAVL AGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS Sbjct: 541 WQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFAS 600 Query: 601 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY 660 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY Sbjct: 601 DRVSGMMRKLGMKPGEAIEHPWVTKAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIY 660 Query: 661 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI 720 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI Sbjct: 661 SQRNELLDVSDVSETINSIREDVFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPI 720 Query: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA 780 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA Sbjct: 721 AEWLDKEPELHEETLRERILAQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLA 780 Query: 781 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 840 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL Sbjct: 781 AMDYLRQGIHLRGYAQKDPKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEEL 840 Query: 841 EQQRRMEAERLAQMXXXXXXXXXXXXXXXXXXXTGERKVGRNDPCPCGSGKKYKQCHGRL 900 EQQRRMEAERLAQM TGERKVGRNDPCPCGSGKKYKQCHGRL Sbjct: 841 EQQRRMEAERLAQMQQLSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRL 900 Query: 901 Q 901 Q Sbjct: 901 Q 901 >b1908 orf, hypothetical protein (yecA) {Escherichia coli K12-MG1655} Length = 221 Score = 49.3 bits (116), Expect = 1e-006 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 828 KVQVRMPEEVEELEQQRRMEAERLAQMXXXXXXXXXXXXXXXXXXXTGERKVGRNDPCPC 887 +V+ PE EE ++A RLA + E K GRNDPCPC Sbjct: 155 RVEKMSPEAFEE-----SVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPC 209 Query: 888 GSGKKYKQC 896 GSGKK+KQC Sbjct: 210 GSGKKFKQC 218 Query= Z0109 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions (mutT) {Escherichia coli O157:H7 EDL933} (132 letters) Score E Sequences producing significant alignments: (bits) Value b0099 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, cau... 266 3e-073 b1759 orf, hypothetical protein {Escherichia coli K12-MG1655} 57 4e-010 >b0099 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions (mutT) [3.6.1.-] {Escherichia coli K12-MG1655} Length = 129 Score = 266 bits (680), Expect = 3e-073 Identities = 126/129 (97%), Positives = 128/129 (99%) Query: 1 MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60 MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI Sbjct: 1 MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60 Query: 61 TPQHFSLFEKLEYEFPDRHITLWFWLVESWEGEPWGKEGQPGKWMSLVGLNADDFPPANE 120 TPQHFSLFEKLEYEFPDRHITLWFWLVE WEGEPWGKEGQPG+WMSLVGLNADDFPPANE Sbjct: 61 TPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPANE 120 Query: 121 PVIAKLKRV 129 PVIAKLKR+ Sbjct: 121 PVIAKLKRL 129 >b1759 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 135 Score = 57.0 bits (136), Expect = 4e-010 Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Query: 1 MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGI 60 MK +++ II + +I + +R A + A EF GGK+E E+ QA+VREL+EE+GI Sbjct: 1 MKMIEVVAAIIERDG-KILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGI 59 Query: 61 TPQHFSLFEKLEYEFPDRHITLWFWLVESWEGEPWGKEGQPGKWMSLVGLNADDFPPANE 120 + E R I L W V + G E Q W S PA+ Sbjct: 60 EATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALVWCSPEEALQYPLAPADI 119 Query: 121 PVI 123 P++ Sbjct: 120 PLL 122 Query= Z0110 orf, hypothetical protein {Escherichia coli O157:H7 EDL933} (44 letters) Score E Sequences producing significant alignments: (bits) Value b0100 orf, hypothetical protein {Escherichia coli K12-MG1655} 89 5e-020 >b0100 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 44 Score = 89.0 bits (219), Expect = 5e-020 Identities = 43/44 (97%), Positives = 44/44 (100%) Query: 1 MAIFPKAMTGAKSQSSDICLMPHVGLIRRGQRRIRHLVQMSDAA 44 MAIFPKAMTGAK+QSSDICLMPHVGLIRRGQRRIRHLVQMSDAA Sbjct: 1 MAIFPKAMTGAKNQSSDICLMPHVGLIRRGQRRIRHLVQMSDAA 44 Query= Z0111 orf, hypothetical protein (yacG) {Escherichia coli O157:H7 EDL933} (65 letters) Score E Sequences producing significant alignments: (bits) Value b0101 orf, hypothetical protein (yacG) {Escherichia coli K12-MG1... 143 2e-036 >b0101 orf, hypothetical protein (yacG) {Escherichia coli K12-MG1655} Length = 65 Score = 143 bits (360), Expect = 2e-036 Identities = 65/65 (100%), Positives = 65/65 (100%) Query: 1 MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS 60 MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS Sbjct: 1 MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEEKRIPSSGDLSESDDWS 60 Query: 61 EEPKQ 65 EEPKQ Sbjct: 61 EEPKQ 65 Query= Z0112 orf, hypothetical protein (yacF) {Escherichia coli O157:H7 EDL933} (247 letters) Score E Sequences producing significant alignments: (bits) Value b0102 orf, hypothetical protein (yacF) {Escherichia coli K12-MG1... 464 e-132 >b0102 orf, hypothetical protein (yacF) {Escherichia coli K12-MG1655} Length = 247 Score = 464 bits (1195), Expect = e-132 Identities = 233/247 (94%), Positives = 233/247 (94%) Query: 1 MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVR 60 MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVR Sbjct: 1 MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFFRNVSELLDVFERGEVR 60 Query: 61 TELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIAL 120 TELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIAL Sbjct: 61 TELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVLISAPRIGQFLREDRLIAL 120 Query: 121 VRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDCQVETWIASLNPLTQALTMVLDLIRQSAP 180 VRQRLSIPGGCCSFDLPTLHIWLHLPQAQRD QVETWIASLNPLTQALTMVLDLIRQSAP Sbjct: 121 VRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIASLNPLTQALTMVLDLIRQSAP 180 Query: 181 FRKQTSLNGFYQDNGGDAXXXXXXXXXXXXXYPQISGHKSRFAIRFMPLDTENGQVPERL 240 FRKQTSLNGFYQDNGGDA YPQISGHKSRFAIRFMPLDTENGQVPERL Sbjct: 181 FRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGHKSRFAIRFMPLDTENGQVPERL 240 Query: 241 DFELACC 247 DFELACC Sbjct: 241 DFELACC 247 Query= Z0113 putative DNA repair protein (yacE) {Escherichia coli O157:H7 EDL933} (206 letters) Score E Sequences producing significant alignments: (bits) Value b0103 putative DNA repair protein (yacE) {Escherichia coli K12-M... 379 e-106 >b0103 putative DNA repair protein (yacE) {Escherichia coli K12-MG1655} Length = 206 Score = 379 bits (972), Expect = e-106 Identities = 196/206 (95%), Positives = 196/206 (95%) Query: 1 MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA 60 MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA Sbjct: 1 MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGAPALHAIADHFGANMIA 60 Query: 61 ADGTLQRRALRERIFANPEEKNWLNALLHPLIXXXXXXXXXXATSPYVLWVVPLLVENSL 120 ADGTLQRRALRERIFANPEEKNWLNALLHPLI ATSPYVLWVVPLLVENSL Sbjct: 61 ADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQATSPYVLWVVPLLVENSL 120 Query: 121 YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPD 180 YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPD Sbjct: 121 YKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNNGAPD 180 Query: 181 AIASDVARLHAHYLQLASQFVSQEKP 206 AIASDVARLHAHYLQLASQFVSQEKP Sbjct: 181 AIASDVARLHAHYLQLASQFVSQEKP 206 Query= Z0114 GMP reductase (guaC) {Escherichia coli O157:H7 EDL933} (347 letters) Score E Sequences producing significant alignments: (bits) Value b0104 GMP reductase (guaC) [1.6.6.8] {Escherichia coli K12-MG1655} 692 0.0 b2508 IMP dehydrogenase (guaB) [1.2.1.14] {Escherichia coli K12-... 146 2e-036 >b0104 GMP reductase (guaC) [1.6.6.8] {Escherichia coli K12-MG1655} Length = 347 Score = 692 bits (1785), Expect = 0.0 Identities = 346/347 (99%), Positives = 347/347 (100%) Query: 1 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTF 60 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTF Sbjct: 1 MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSWSGVPIIAANMDTVGTF 60 Query: 61 SMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILDLN 120 SMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILDLN Sbjct: 61 SMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVSTGTSDADFEKTKQILDLN 120 Query: 121 PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI 180 PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI Sbjct: 121 PALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGI 180 Query: 181 GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIISDGGCTTPGDVAKAFGGGADFVM 240 GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMI+SDGGCTTPGDVAKAFGGGADFVM Sbjct: 181 GPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVSDGGCTTPGDVAKAFGGGADFVM 240 Query: 241 LGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGP 300 LGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGP Sbjct: 241 LGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTVKLPLRGP 300 Query: 301 VENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRIFNNL 347 VENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRIFNNL Sbjct: 301 VENTARDILGGLRSACTYVGASRLKELTKRTTFIRVQEQENRIFNNL 347 >b2508 IMP dehydrogenase (guaB) [1.2.1.14] {Escherichia coli K12-MG1655} Length = 488 Score = 146 bits (369), Expect = 2e-036 Identities = 82/221 (37%), Positives = 117/221 (52%), Gaps = 7/221 (3%) Query: 123 LNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVVTGEMCEELILSGADIVKVGIGP 182 ++ + ID ++G+SE +Q + + R +P I GNV T L +G VKVGIGP Sbjct: 242 VDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGGNVATAAGARALAEAGCSAVKVGIGP 301 Query: 183 GSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIISDGGCTTPGDVAKAFGGGADFVMLG 242 GS+CTTR+ TGVG PQ++AV + +A G G +I+DGG GD+AKA GA VM+G Sbjct: 302 GSICTTRIVTGVGVPQITAVADAVEALEGTGIPVIADGGIRFSGDIAKAIAAGASAVMVG 361 Query: 243 GMLAGHEESGGRIVEENGEKFMLFYGMSSESAMKR-------HVGGVAEYRAAEGKTVKL 295 MLAG EES G I G + + GM S AM + A+ EG ++ Sbjct: 362 SMLAGTEESPGEIELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSDNAADKLVPEGIEGRV 421 Query: 296 PLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIRV 336 +G ++ +GGLRS G + EL + F+R+ Sbjct: 422 AYKGRLKEIIHQQMGGLRSCMGLTGCGTIDELRTKAEFVRI 462 Query= Z0115 orf, hypothetical protein {Escherichia coli O157:H7 EDL933} (35 letters) Score E Sequences producing significant alignments: (bits) Value b0105 orf, hypothetical protein {Escherichia coli K12-MG1655} 63 3e-012 >b0105 orf, hypothetical protein {Escherichia coli K12-MG1655} Length = 35 Score = 63.2 bits (152), Expect = 3e-012 Identities = 31/35 (88%), Positives = 32/35 (91%) Query: 1 MLLHTSVGRLQVVEDAVFLFLHTDKCGALGQFFQA 35 MLLH SVGRLQVVEDAVFLFLHT+K GALGQ FQA Sbjct: 1 MLLHASVGRLQVVEDAVFLFLHTNKRGALGQLFQA 35 Query= Z0116 putative integral membrane protein involved in biogenesis (hofC) {Escherichia coli O157:H7 EDL933} (400 letters) Score E Sequences producing significant alignments: (bits) Value b0106 putative integral membrane protein involved in biogenesis ... 673 0.0 b3327 putative general protein secretion protein (hofF) {Escheri... 97 2e-021 >b0106 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (hofC) {Escherichia coli K12-MG1655} Length = 400 Score = 673 bits (1736), Expect = 0.0 Identities = 342/400 (85%), Positives = 345/400 (86%) Query: 1 MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKS 60 MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKS Sbjct: 1 MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKS 60 Query: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV Sbjct: 61 AEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEV 120 Query: 121 FPPLYQAMIRTGELTGKLDECCFELXXXXXXXXXLTDKVKSALRYPXXXXXXXXXXXXXX 180 FPPLYQAMIRTGELTGKLDECCFEL LTDKVKSALRYP Sbjct: 121 FPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIMVVVAM 180 Query: 181 XHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMRRPTW 240 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEW WLLVLFG +L IANKLLMRRPTW Sbjct: 181 LHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLMRRPTW 240 Query: 241 LIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL 300 LI RQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL Sbjct: 241 LIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL 300 Query: 301 TQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTMXXXX 360 TQIQHDISNG PIWLALKN GEFSPLCLQLVRTGEASGSLDLMLDN+AHHHR+NTM Sbjct: 301 TQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENTMALAD 360 Query: 361 XXXXXXXXXXXXXXXXXXXXXVVAMYLPIFHLGDAMSGMG 400 VVAMYLPIFHLGDAMSGMG Sbjct: 361 NLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSGMG 400 >b3327 putative general protein secretion protein (hofF) {Escherichia coli K12-MG1655} Length = 398 Score = 96.7 bits (239), Expect = 2e-021 Identities = 77/343 (22%), Positives = 150/343 (43%), Gaps = 5/343 (1%) Query: 7 WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGDKSAE---- 62 +R+ +T DG G++ A + L+++ + L ++ + + R + + Sbjct: 3 YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELT 62 Query: 63 -VIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121 QLATL A L L E LA++ +Q +K+ +L + + +G S+AL + +F Sbjct: 63 LFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLF 122 Query: 122 PPLYQAMIRTGELTGKLDECCFELXXXXXXXXXLTDKVKSALRYPXXXXXXXXXXXXXXX 181 LY+ +++ GE +G L +L + K+ +L YP Sbjct: 123 DSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILL 182 Query: 182 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMRRPTWL 241 V+P+ + LP T+ ++ L+D G L+ ++ + L ++R Sbjct: 183 TAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNR 242 Query: 242 IARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLT 301 +LLR+ ++G L+ + L++ QS+G+ L G+ E++ Q L Sbjct: 243 HRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLA 302 Query: 302 QIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLML 344 ++ G+ I L+L+ F P+ L +V +GE SG L ++ Sbjct: 303 NAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLM 345 Query= Z0117 putative integral membrane protein involved in biogenesis (hofB) {Escherichia coli O157:H7 EDL933} (461 letters) Score E Sequences producing significant alignments: (bits) Value b0107 putative integral membrane protein involved in biogenesis ... 910 0.0 b3326 putative general secretion pathway for protein export (GSP... 311 4e-086 b2950 putative protein transport (yggR) {Escherichia coli K12-MG... 120 1e-028 >b0107 putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (hofB) {Escherichia coli K12-MG1655} Length = 461 Score = 910 bits (2351), Expect = 0.0 Identities = 457/461 (99%), Positives = 457/461 (99%) Query: 1 MNIPQLTALCLRYQGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQME 60 MNIPQLTALCLRY GVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQME Sbjct: 1 MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFATTKRIEITCWTRQQME 60 Query: 61 GHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLH 120 GHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLH Sbjct: 61 GHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLH 120 Query: 121 PLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKV 180 PLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKV Sbjct: 121 PLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKV 180 Query: 181 VLRLLQQVSQALDVNTLGMQPLQLAGFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN 240 VLRLLQQV QALDVNTLGMQPLQLA FAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN Sbjct: 181 VLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLN 240 Query: 241 TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAE 300 TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAE Sbjct: 241 TADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAE 300 Query: 301 IAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR 360 IAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR Sbjct: 301 IAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR 360 Query: 361 QQGEPIHIPVNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVES 420 QQGEPIHIP NVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVES Sbjct: 361 QQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGFYGRTALFEVLPITPVIRQLISANTDVES 420 Query: 421 LETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE 461 LETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE Sbjct: 421 LETHARQAGMRTLFENGCLAVEQGLTTFEELIRVLGMPHGE 461 >b3326 putative general secretion pathway for protein export (GSP) (TYPE II TRAFFIC WARDEN ATPASE) (yheG) {Escherichia coli K12-MG1655} Length = 493 Score = 311 bits (798), Expect = 4e-086 Identities = 172/390 (44%), Positives = 243/390 (62%), Gaps = 17/390 (4%) Query: 75 QEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALT 134 ++ P L+ L A+++ ASDIHIE + IR RIDGVL + + L Sbjct: 102 EDSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALLI 161 Query: 135 ARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKVVLRLLQQVSQALDV 194 +R+KV+ LDIAE R+PQDG+ ++ + + R++TLP GE+ VLRLL + S L + Sbjct: 162 SRIKVMARLDIAEKRIPQDGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSL 221 Query: 195 NTLGMQPLQLAGFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVE 254 N LGM + +Q P G++LVTGPTGSGK+ TLY+ L LNT NI +VEDPVE Sbjct: 222 NNLGMTAADKQDLENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVE 281 Query: 255 IPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLS 314 + G+ QTQ++ R ++F LRA+LRQDPDV+M+GEIRD ETA+IA++A+ TGHLVLS Sbjct: 282 YELEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASLTGHLVLS 341 Query: 315 TLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRR------QQGEPI-- 366 TLHTNS + RL+ MGV ++LSS+L +IAQRLVR+LCP CR+ QQ + Sbjct: 342 TLHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKY 401 Query: 367 -HIPVNVWPSPLPHWQAPGCVHCYH-GFYGRTALFEVLPITPVIRQLISANTDVESLETH 424 + V +P+ GC HC+ G+ GR A+ E++ +TP +R I N D ++LE Sbjct: 402 HQLAVTTIGTPV------GCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERL 455 Query: 425 ARQAGMRTLFENGCLAVEQGLTTFEELIRV 454 RQ + L +NG V G T+++E++RV Sbjct: 456 VRQQ-HKALIKNGLQKVISGDTSWDEVMRV 484 >b2950 putative protein transport (yggR) {Escherichia coli K12-MG1655} Length = 341 Score = 120 bits (302), Expect = 1e-028 Identities = 99/272 (36%), Positives = 141/272 (51%), Gaps = 29/272 (10%) Query: 92 ALEQRASDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLP 151 +++ SD+H+ +A+ R RI G + P +PD L L D L Sbjct: 25 SVKHNVSDLHL---CSAWPARWRIRGRMEAAPFDTPDVEELLREWLD-----DDQRAILL 76 Query: 152 QDGQ--FTVELAGNAVSFRIATLPCRGGEKVVLRLLQQVSQALDVNTLGMQPLQLAGFAH 209 ++GQ F V LA N R + R G + LRLL S + LG + Sbjct: 77 ENGQLDFAVSLAENQ-RLRGSAFAQRHGISLALRLLP--SHCPQLEQLGAPTV----LPE 129 Query: 210 ALQQPQGLVLVTGPTGSGKTVTLYSALQKLNT-ADINICSVEDPVEIPIAG----LNQTQ 264 L+ GL+LVTG TGSGK+ TL + + LN AD +I ++EDPVE A + Q + Sbjct: 130 LLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVEYLYASQRCLIQQRE 189 Query: 265 IHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCET 324 I +TF LRA LR+DPDVI++GE+RD ET +A+ AA+TGHLVL+TLHT + Sbjct: 190 IGLHC-MTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQA 248 Query: 325 LVRL------QQMGVARWMLSSALTLVIAQRL 350 + RL Q+ R L+ +L V++Q+L Sbjct: 249 VERLVDSFPAQEKDPVRNQLAGSLRAVLSQKL 280 Query= Z0118 prelipin peptidase dependent protein (ppdD) {Escherichia coli O157:H7 EDL933} (146 letters) Score E Sequences producing significant alignments: (bits) Value b0108 prelipin peptidase dependent protein (ppdD) {Escherichia c... 269 5e-074 >b0108 prelipin peptidase dependent protein (ppdD) {Escherichia coli K12-MG1655} Length = 146 Score = 269 bits (688), Expect = 5e-074 Identities = 133/146 (91%), Positives = 133/146 (91%) Query: 1 MDKQRGFTLIELMVVXXXXXXXXXXXXPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH 60 MDKQRGFTLIELMVV PAYQNYLRKAALTDMLQTFVPYRTAVELCALEH Sbjct: 1 MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEH 60 Query: 61 GGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGW 120 GGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGW Sbjct: 61 GGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGW 120 Query: 121 ARNCNIQSDSALQQACEDVFRFDDAN 146 RNCNIQSDSALQQACEDVFRFDDAN Sbjct: 121 TRNCNIQSDSALQQACEDVFRFDDAN 146 Query= Z0119 quinolinate phosphoribosyltransferase (nadC) {Escherichia coli O157:H7 EDL933} (297 letters) Score E Sequences producing significant alignments: (bits) Value b0109 quinolinate phosphoribosyltransferase (nadC) [2.4.2.19] {E... 550 e-158 >b0109 quinolinate phosphoribosyltransferase (nadC) [2.4.2.19] {Escherichia coli K12-MG1655} Length = 297 Score = 550 bits (1417), Expect = e-158 Identities = 281/297 (94%), Positives = 281/297 (94%) Query: 1 MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATV 60 MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATV Sbjct: 1 MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANNDITAKLLPENSRSHATV 60 Query: 61 ITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQPLFELEGPSRVLLTGERT 120 ITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ LFELEGPSRVLLTGERT Sbjct: 61 ITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQSLFELEGPSRVLLTGERT 120 Query: 121 ALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLS 180 ALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLS Sbjct: 121 ALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLRSALKYAVLCGGGANHRLGLS 180 Query: 181 DAFLIKENHIIASGSVRQAVEKASWLHPDAPXXXXXXXXXXXXXXXKAGADIIMLDNFET 240 DAFLIKENHIIASGSVRQAVEKASWLHPDAP KAGADIIMLDNFET Sbjct: 181 DAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVENLEELDEALKAGADIIMLDNFET 240 Query: 241 EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR 297 EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR Sbjct: 241 EQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVDFISVGALTKHVQALDLSMRFR 297 Query= Z0120 regulates ampC (ampD) {Escherichia coli O157:H7 EDL933} (183 letters) Score E Sequences producing significant alignments: (bits) Value b0110 regulates ampC (ampD) {Escherichia coli K12-MG1655} 386 e-109 b0867 putative regulator {Escherichia coli K12-MG1655} 77 7e-016 >b0110 regulates ampC (ampD) {Escherichia coli K12-MG1655} Length = 183 Score = 386 bits (992), Expect = e-109 Identities = 181/183 (98%), Positives = 181/183 (98%) Query: 1 MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA 60 MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA Sbjct: 1 MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA 60 Query: 61 HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT 120 HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT Sbjct: 61 HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT 120 Query: 121 DTLAYTDAQYQQLAAVTRALIDCYPDIANNMTGHCDIAPDRKTDPGPAFDWARFRALVSK 180 DTLAYTDAQYQQLAAVTRALIDCYPDIA NMTGHCDIAPDRKTDPGPAFDWARFR LVSK Sbjct: 121 DTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPDRKTDPGPAFDWARFRVLVSK 180 Query: 181 ETT 183 ETT Sbjct: 181 ETT 183 >b0867 putative regulator {Escherichia coli K12-MG1655} Length = 276 Score = 77.0 bits (188), Expect = 7e-016 Identities = 50/123 (40%), Positives = 65/123 (52%), Gaps = 16/123 (13%) Query: 65 AEIAHLRVSAHCLI-----RRDGE--IVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIEL 117 A + +VS+H L+ R +G+ I Q VP + AWHAG+S ++G R ND SIGIEL Sbjct: 61 ATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGISAWRGATRLNDTSIGIEL 120 Query: 118 E--------GTDTLA-YTDAQYQQLAAVTRALIDCYPDIANNMTGHCDIAPDRKTDPGPA 168 E G A + AQ Q L + + +I Y N+ H DIAP RK DPGP Sbjct: 121 ENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKPENVVAHADIAPQRKDDPGPL 180 Query: 169 FDW 171 F W Sbjct: 181 FPW 183 Query= Z0121 regulates ampC (ampE) {Escherichia coli O157:H7 EDL933} (284 letters) Score E Sequences producing significant alignments: (bits) Value b0111 regulates ampC (ampE) {Escherichia coli K12-MG1655} 550 e-158 >b0111 regulates ampC (ampE) {Escherichia coli K12-MG1655} Length = 284 Score = 550 bits (1417), Expect = e-158 Identities = 273/284 (96%), Positives = 273/284 (96%) Query: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA Sbjct: 1 MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTLGMTIIAMGVTFLLLRA 60 Query: 61 LQGVLFNVPTXXXXXXXXXXCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 LQGVLFNVPT CIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP Sbjct: 61 LQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRNDSHARATMAGELTMIHGVP 120 Query: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT Sbjct: 121 AGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPVTLMGYAFLRAWQYWLARYQT 180 Query: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFRTSQYQVLTRLA 240 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDF TSQYQVLTRLA Sbjct: 181 PHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKALPAWFASLGDFHTSQYQVLTRLA 240 Query: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV Sbjct: 241 QFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIALLTIYGALV 284 Query= Z0122 aromatic amino acid transport protein (aroP) {Escherichia coli O157:H7 EDL933} (457 letters) Score E Sequences producing significant alignments: (bits) Value b0112 aromatic amino acid transport protein (aroP) {Escherichia ... 839 0.0 b0576 phenylalanine-specific transport system (pheP) {Escherichi... 548 e-157 b0402 proline permease transport protein (proY) {Escherichia col... 343 1e-095 b3795 putative amino acid/amine transport protein (yifK) {Escher... 309 3e-085 b4208 transport of D-alanine, D-serine, and glycine (cycA) {Esch... 304 9e-084 b1453 L-asparagine permease (ansP) {Escherichia coli K12-MG1655} 276 2e-075 b0260 putative amino acid/amine transport protein (ykfD) {Escher... 258 4e-070 b2663 transport permease protein of gamma-aminobutyrate (gabP) {... 253 2e-068 b2156 lysine-specific permease (lysP) {Escherichia coli K12-MG1655} 223 2e-059 b4115 putative amino acid/amine transport protein, cryptic (yjdE... 63 5e-011 b1296 putative amino acid/amine transport protein (ycjJ) {Escher... 63 5e-011 b2014 putative amino acid/amine transport protein (yeeF) {Escher... 61 2e-010 b4132 transport of lysine/cadaverine (cadB) {Escherichia coli K1... 57 2e-009 b0692 putrescine transport protein (potE) {Escherichia coli K12-... 50 4e-007 b4141 putative transport (yjeH) {Escherichia coli K12-MG1655} 48 2e-006 b1492 acid sensitivity protein, putative transporter (xasA) {Esc... 47 3e-006 >b0112 aromatic amino acid transport protein (aroP) {Escherichia coli K12-MG1655} Length = 457 Score = 839 bits (2168), Expect = 0.0 Identities = 425/457 (92%), Positives = 427/457 (93%) Query: 1 MMEGQQHGEQLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAF 60 MMEGQQHGEQLKRGLKNRHIQ SASVIQSAGPGIILGYAIAGFIAF Sbjct: 1 MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAF 60 Query: 61 LIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQF 120 LIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQF Sbjct: 61 LIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQF 120 Query: 121 WYPEIPTWVSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSGNG 180 WYPEIPTWVSAAVFFVVINAINLTNV VFGEMEFWF FGGWLLFSGNG Sbjct: 121 WYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNG 180 Query: 181 GPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ 240 GPQA+VSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ Sbjct: 181 GPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ 240 Query: 241 VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVY 300 VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVY Sbjct: 241 VIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVY 300 Query: 301 NSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFG 360 NSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFG Sbjct: 301 NSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFG 360 Query: 361 LLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIM 420 LLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMA VLVIM Sbjct: 361 LLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIM 420 Query: 421 LMTPGMAISVYLIPVWLVVLGIGYLFKEKTAKAVKAH 457 LMTPGMAISVYLIPVWL+VLGIGYLFKEKTAKAVKAH Sbjct: 421 LMTPGMAISVYLIPVWLIVLGIGYLFKEKTAKAVKAH 457 >b0576 phenylalanine-specific transport system (pheP) {Escherichia coli K12-MG1655} Length = 458 Score = 548 bits (1411), Expect = e-157 Identities = 258/434 (59%), Positives = 327/434 (75%) Query: 11 LKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMV 70 L RGL NRHIQ IQ AGP ++LGY +AG IAFLIMRQLGEMV Sbjct: 19 LHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMV 78 Query: 71 VEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVS 130 VEEPV+GSF+HFAYKYWG FAGF SGWNYWV++VLV MAELTA G Y+Q+W+P++PTW+ Sbjct: 79 VEEPVSGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 Query: 131 AAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSGNGGPQASVSNLW 190 AA FF++INA+NL NV ++GE EFWF FG WLLFSG+GG +AS+ NLW Sbjct: 139 AAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLW 198 Query: 191 DQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYI 250 GGF G+ GL++ +A+IMFSFGGLEL+GITAAEA +PE+SIPKA NQV+YRIL+FYI Sbjct: 199 RYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYI 258 Query: 251 GSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRM 310 GSL VLL+L PW V +++SPFV+IFH L VA+ALN V+L A+LSVYNS VY NSRM Sbjct: 259 GSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRM 318 Query: 311 LFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSAL 370 LFGL+ QGNAPK L V +RGVP+N++++S +T+L VLINYL P+ AFGLLMALVV+ L Sbjct: 319 LFGLSVQGNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATL 378 Query: 371 VINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIMLMTPGMAISV 430 ++NW MI LAH++FR A + QG T+F ALLYP GN++C+ F+ ++L++M M +S Sbjct: 379 LLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSA 438 Query: 431 YLIPVWLVVLGIGY 444 L+PVW+V L + + Sbjct: 439 ILLPVWIVFLFMAF 452 >b0402 proline permease transport protein (proY) {Escherichia coli K12-MG1655} Length = 457 Score = 343 bits (880), Expect = 1e-095 Identities = 180/447 (40%), Positives = 264/447 (59%), Gaps = 11/447 (2%) Query: 10 QLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEM 69 +LKRGL RHI+ SA I+ AGP ++L Y I G A++IMR LGEM Sbjct: 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEM 65 Query: 70 VVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWV 129 V P A SFS +A + G AG+ +GW Y ++VA+A++TA G Y+ W+P +P W+ Sbjct: 66 SVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWI 125 Query: 130 SAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLF--SGNGGPQASVS 187 ++I A+NL +V VFGE+EFWF G ++ GNGG + Sbjct: 126 WVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIH 185 Query: 188 NLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILI 247 NLW GGF +G+ G+VM + ++MF++GG+E++GITA EA +PE+SIP+A N V RIL+ Sbjct: 186 NLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILV 245 Query: 248 FYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCN 307 FY+G+L V++S+ PW +V SPFVL F +G TF A+ LN VVLTA+LS NS V+ Sbjct: 246 FYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 Query: 308 SRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV 367 RML G+A+QG+APK + +RG+P T+LV V +NY+ PE+ F ++ +L Sbjct: 306 GRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLAT 365 Query: 368 SALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWIC-----LLFMAVVLVIMLM 422 A V W MI L+ + FRR + V AL + + + L+F+ ++ ++ Sbjct: 366 FATVWVWIMILLSQIAFRRRLPPEEV----KALKFKVPGGVATTIGGLIFLLFIIGLIGY 421 Query: 423 TPGMAISVYLIPVWLVVLGIGYLFKEK 449 P IS+Y+ W+VVL IG++FK + Sbjct: 422 HPDTRISLYVGFAWIVVLLIGWMFKRR 448 >b3795 putative amino acid/amine transport protein (yifK) {Escherichia coli K12-MG1655} Length = 461 Score = 309 bits (791), Expect = 3e-085 Identities = 154/435 (35%), Positives = 256/435 (58%), Gaps = 4/435 (0%) Query: 10 QLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEM 69 +L+RGL+ RHI+ +AS ++ AGP ++L Y IAG F IMR +GEM Sbjct: 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEM 66 Query: 70 VVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWV 129 + EPV GSF+ +A++Y F G+ + W+YW +++ V ++E+TA+G Y+QFW+PE+ W+ Sbjct: 67 LSLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWI 126 Query: 130 SAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSG--NGGPQASVS 187 A + ++ NL V ++GE+EFWF G ++F G NGG S Sbjct: 127 PALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFS 186 Query: 188 NLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILI 247 NL + GGF G+ G + + I++ S+ G+EL+GITA EA NP+ ++ A +V++RILI Sbjct: 187 NLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILI 246 Query: 248 FYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCN 307 FY+G++ V++++ PW + ++ SPFVL F ++G T A +N VVLTAALS NS +Y Sbjct: 247 FYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSC 306 Query: 308 SRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLA--PESAFGLLMAL 365 RML+ LA+ P A+A V + GVPV + VS + + NY+ P+ F + + Sbjct: 307 GRMLYALAKNRQLPAAMAKVSRHGVPVAGVAVSIAILLIAHAWNYIIPNPQRVFVYVYSA 366 Query: 366 VVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIMLMTPG 425 V ++ W +I ++ ++FRRA + F ++L+P N++ + F+ VL+ M Sbjct: 367 SVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYVTMAFLICVLIGMYFNED 426 Query: 426 MAISVYLIPVWLVVL 440 +S+++ ++++ + Sbjct: 427 TRMSLFVGIIFMLAV 441 >b4208 transport of D-alanine, D-serine, and glycine (cycA) {Escherichia coli K12-MG1655} Length = 470 Score = 304 bits (778), Expect = 9e-084 Identities = 162/450 (36%), Positives = 249/450 (55%), Gaps = 5/450 (1%) Query: 9 EQLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQLGE 68 + L+R L NRHIQ S I AGP II Y I GF+ F +MR +GE Sbjct: 17 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGE 76 Query: 69 MVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTW 128 +++ SFS FA G +AG+ +GW YW +V+ MA++ A+ Y QFW+P++ W Sbjct: 77 LLLSNLEYKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDW 136 Query: 129 VSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLL---FSGNGGPQAS 185 V++ V++ +NL V +FGEMEFWF G ++ F G +AS Sbjct: 137 VASLAVIVLLLTLNLATVKMFGEMEFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEAS 196 Query: 186 VSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRI 245 ++LW+ GG+ P G +G I +F+F G+ELVG TAAE +PE+S+P+A N + RI Sbjct: 197 FAHLWNDGGWFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRI 256 Query: 246 LIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVY 305 ++FY+ +L V++S+ PW+ V + SPFV +F +G A+ +N VVLT+A S NS V+ Sbjct: 257 IMFYVFALIVIMSVTPWSSVVPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVF 316 Query: 306 CNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL 365 SRMLFGLAQ+G APKA A + KR VP + S + V++ Y+ P M Sbjct: 317 STSRMLFGLAQEGVAPKAFAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMIT 376 Query: 366 VVSALVIN--WAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIMLMT 423 VSA++ W +I +++ +R+ + + + L L W+C+ F V+V++ + Sbjct: 377 TVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLE 436 Query: 424 PGMAISVYLIPVWLVVLGIGYLFKEKTAKA 453 ++ + P+W + LG+G+LF K A Sbjct: 437 DDTRQALLVTPLWFIALGLGWLFIGKKRAA 466 >b1453 L-asparagine permease (ansP) {Escherichia coli K12-MG1655} Length = 516 Score = 276 bits (706), Expect = 2e-075 Identities = 146/444 (32%), Positives = 238/444 (53%), Gaps = 6/444 (1%) Query: 7 HGEQLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQL 66 H E + + NR +Q + + +Q AGP + L Y I G +F I+R L Sbjct: 39 HEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRAL 98 Query: 67 GEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFW--YPE 124 GE+V+ P +GSF +A ++ G A + +GW Y++ + + + ++TAV Y+ +W + Sbjct: 99 GELVLHRPSSGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGG 158 Query: 125 IPTWVSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSGN--GGP 182 +P WV A ++ +N+ V F EMEFWF G L SG G Sbjct: 159 VPQWVFALAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGN 218 Query: 183 QASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVI 242 + D GGF PHG ++++ ++F+F +E+VG A E +P+ +PKA N VI Sbjct: 219 TTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVI 278 Query: 243 YRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNS 302 +RI +FY+GS+ +L+ L+PW+ A SPFV F +LG ++ + +NIVVLTAALS NS Sbjct: 279 WRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNS 338 Query: 303 CVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLL 362 +YC R+L +A G+AP +A + ++ VP IL + +V + V +NYL P F ++ Sbjct: 339 GLYCTGRILRSMAMGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIV 398 Query: 363 MALVVSALVINWAMISLAHMKFRRA-KQEQGVVTRFPALLYPLGNWICLLFMAVVLVIML 421 + ++ +WA I + M+ R+A K+ + F P +W+ LLF+ VLV+M Sbjct: 399 LNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMA 458 Query: 422 MT-PGMAISVYLIPVWLVVLGIGY 444 P ++ +P+ ++L IG+ Sbjct: 459 FDYPNGTYTIAALPIIGILLVIGW 482 >b0260 putative amino acid/amine transport protein (ykfD) {Escherichia coli K12-MG1655} Length = 475 Score = 258 bits (660), Expect = 4e-070 Identities = 150/465 (32%), Positives = 234/465 (50%), Gaps = 10/465 (2%) Query: 2 MEGQQHGEQLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGP-GIILGYAIAGFIAF 60 M+ Q LKR +K RH+ + +I + G G +L Y I + + Sbjct: 9 MQTTQQNAPLKRTMKTRHLIMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVW 68 Query: 61 LIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQF 120 L+M+ LGE+ V P G+F +A +Y G G+ W YW+ + + + TA G +Q+ Sbjct: 69 LVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSFTAAGFCMQY 128 Query: 121 WYPEIPTWVSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFS--- 177 W+P++P WV VF +I +N+ + F E EFWF GG +F Sbjct: 129 WFPQVPVWVWCVVFCAIIFGLNVISTRFFAEGEFWFSLVKVVTIIAFIILGGAAIFGFIP 188 Query: 178 -GNGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPK 236 +G P +SN+ +G F PHG ++M M + F+F G EL+GI A E +NP + IP Sbjct: 189 MQDGSPAPGLSNITAEGWF-PHGGLPILMTMVAVNFAFSGTELIGIAAGETENPRKVIPV 247 Query: 237 ATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAA 296 A I R++IF+IG++ VL +L+P +V + SPFVL+F ++G + A+ N V+LTA Sbjct: 248 AIRTTIARLIIFFIGTVFVLAALIPMQQVGVEKSPFVLVFEKVGIPYAADIFNFVILTAI 307 Query: 297 LSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPE 356 LS NS +Y + RML+ L+ + P A V K GVP+ + VS L L + + +AP+ Sbjct: 308 LSAANSGLYASGRMLWSLSNERTLPACFARVTKNGVPLTALSVSMLGGVLALFSSVVAPD 367 Query: 357 SAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVV---TRFPALLYPLGNWICLLFM 413 + F L A+ A+V W I +H FRR +QG + A YPL + + Sbjct: 368 TVFVALSAISGFAVVAVWLSICASHFVFRRRHLQQGKALSELHYRAPWYPLVPVLGFVLC 427 Query: 414 AVVLVIMLMTPGMAISVYL-IPVWLVVLGIGYLFKEKTAKAVKAH 457 V V + P I+++ +P + G +L + + AK H Sbjct: 428 LVACVGLAFDPAQRIALWCGLPFVALCYGAYFLTQPRNAKQEPEH 472 >b2663 transport permease protein of gamma-aminobutyrate (gabP) {Escherichia coli K12-MG1655} Length = 466 Score = 253 bits (645), Expect = 2e-068 Identities = 144/435 (33%), Positives = 222/435 (51%), Gaps = 4/435 (0%) Query: 10 QLKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEM 69 +L GLK+RH+ S+ I AGP ++L Y AG + +IMR L EM Sbjct: 9 ELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEM 68 Query: 70 VVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWV 129 V P GSFS +A K G +AG+ GW YW +VLV E + W P IP W+ Sbjct: 69 AVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWL 128 Query: 130 SAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSGNGGPQAS-VSN 188 + V + + NL +V +GE EFW G + + S +S Sbjct: 129 FSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISR 188 Query: 189 LWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIF 248 LWD GGF+P+GF ++ M I MFSF G E+V I AAE+D PE+ I +ATN VI+RI IF Sbjct: 189 LWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIF 248 Query: 249 YIGSLAVLLSLMPWTRV-TADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCN 307 Y+ S+ V+++L+PW + + L ++ V+L + S NS +Y Sbjct: 249 YLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTA 308 Query: 308 SRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVV 367 SRML+ L+++G+AP + +++ P +L+S L V++NY AP F L+ Sbjct: 309 SRMLYSLSRRGDAPAVMGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSG 368 Query: 368 SALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIMLMTPGMA 427 + ++ + +I+++ ++ R+ + +G R LYP W+ + F+ VLV+ML P Sbjct: 369 AIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQ 428 Query: 428 ISVYLIPVWLVVLGI 442 + V I L+ +GI Sbjct: 429 LEV--ISTGLLAIGI 441 >b2156 lysine-specific permease (lysP) {Escherichia coli K12-MG1655} Length = 489 Score = 223 bits (569), Expect = 2e-059 Identities = 125/392 (31%), Positives = 199/392 (50%), Gaps = 10/392 (2%) Query: 11 LKRGLKNRHIQXXXXXXXXXXXXXXXSASVIQSAGPG-IILGYAIAGFIAFLIMRQLGEM 69 L+R LK RH+ S + I AGPG +L Y + G + + +M LGE+ Sbjct: 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGEL 72 Query: 70 VVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWV 129 PV+GSF+ + Y GFA GWNYW + + +L A + +W+P+ P W+ Sbjct: 73 AAYMPVSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTPGWI 132 Query: 130 SAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGGWLLFSGNGGPQASVSNL 189 +A+F VI +N +V FGE E+WF G ++ G Q + + Sbjct: 133 WSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSN 192 Query: 190 WDQG-GFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIF 248 W G GF ++ + I+ FSF G EL+GI A E+++P ++IP+A QV +RIL+F Sbjct: 193 WTIGEAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLF 252 Query: 249 YIGSLAVLLSLMPWTRVT--------ADTSPFVLIFHELGDTFVANALNIVVLTAALSVY 300 Y+ ++ ++ ++P+T + SPF L+F G A +N V+LTA LS Sbjct: 253 YVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAG 312 Query: 301 NSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFG 360 NS +Y ++RML+ LA G AP+ A + + GVP N + + ++ LC L + ++ + Sbjct: 313 NSGMYASTRMLYTLACDGKAPRIFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYL 372 Query: 361 LLMALVVSALVINWAMISLAHMKFRRAKQEQG 392 L+ I W I+++H +FRR QG Sbjct: 373 WLLNTSGMTGFIAWLGIAISHYRFRRGYVLQG 404 >b4115 putative amino acid/amine transport protein, cryptic (yjdE) {Escherichia coli K12-MG1655} Length = 445 Score = 62.8 bits (151), Expect = 5e-011 Identities = 79/377 (20%), Positives = 149/377 (39%), Gaps = 29/377 (7%) Query: 41 IQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYW 100 + S G I G+ + A + +M +P G +A + +G F G+ + YW Sbjct: 35 LASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYW 94 Query: 101 VLYVLVAMAELTAVGKYIQFWYPEIP-------TWVSAAVFFVVINAINLTNVTVFGEME 153 + + +A + Y+ +++P + T V FV++N + +T ++ Sbjct: 95 LACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMIT---RVQ 151 Query: 154 FWFXXXXXXXXXXXXXFGGWLLFSGNGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFS 213 FG W F G A W+ G G + + + ++S Sbjct: 152 AVATVLALIPIVGIAVFG-WFWFRGETYMAA-----WNVSGLGTFG--AIQSTLNVTLWS 203 Query: 214 FGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPF- 272 F G+E + A NP++++P AT + + Y+ S ++ ++P + SPF Sbjct: 204 FIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFG 263 Query: 273 VLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGV 332 LGDT A ++ L + A G P A V+K G Sbjct: 264 DAARMALGDTAGA-IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGT 322 Query: 333 PVNTILVSALVTALCVLINYLAPESA--FGLLMALVVSALVINW-----AMISLAHMKFR 385 PV +++ ++ + L + ++P + FGL+ ++ V ++ + A++ L H F Sbjct: 323 PVAGLIIVGILMTIFQL-SSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG 381 Query: 386 RAKQEQGVVTRFPALLY 402 +A+ VT A LY Sbjct: 382 KARPAYLAVTTI-AFLY 397 >b1296 putative amino acid/amine transport protein (ycjJ) {Escherichia coli K12-MG1655} Length = 479 Score = 62.8 bits (151), Expect = 5e-011 Identities = 89/397 (22%), Positives = 148/397 (37%), Gaps = 32/397 (8%) Query: 53 AIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELT 112 A+AG + I G++V + P AGS +A K GF GW+ + Y+ + M + Sbjct: 80 ALAGVLFTAI--SYGKLVRQFPEAGSAYTYAQKSINPHVGFMVGWSSLLDYLFLPMINVL 137 Query: 113 AVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXXXFGG 172 Y+ +PE+P WV F ++ A NL +V + F Sbjct: 138 LAKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFNTLFVLVQISIMVVFIFLVV 197 Query: 173 WLLFSGNGGPQASVSNLWDQGGFLPHG--FTGLVMMMAIIMFSFGGLELVGITAAEADNP 230 L G G V +W F+ ++ I+ FSF G + V + E + Sbjct: 198 QGLHKGEG-----VGTVWSLQPFISENAHLIPIITGATIVCFSFLGFDAVTTLSEETPDA 252 Query: 231 EQSIPKAT-NQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALN 289 + IPKA +Y +IF S + L +R + I +G + Sbjct: 253 ARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAALPEIALYVGGKLFQSIFL 312 Query: 290 IVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKAL---ASVDKRGVPVNTILVSALVTAL 346 L+ + SR+L+ + + P+ + R +N I+V + AL Sbjct: 313 CTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVHPKWRTPALNVIMVG--IVAL 370 Query: 347 CVLINYLAPESA---FGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYP 403 L L +A FG L+A + +S+ + +RR + F LL P Sbjct: 371 SALFFDLVTATALINFGALVA-------FTFVNLSVFNHFWRRKGMNKSWKDHFHYLLMP 423 Query: 404 LGN-------WICLLFMAVVLVIMLMTPGMAISVYLI 433 L W+ L ++ L ++ + G A YLI Sbjct: 424 LVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLI 460 >b2014 putative amino acid/amine transport protein (yeeF) {Escherichia coli K12-MG1655} Length = 454 Score = 60.8 bits (146), Expect = 2e-010 Identities = 79/349 (22%), Positives = 135/349 (38%), Gaps = 26/349 (7%) Query: 52 YAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAEL 111 YA A G++V P AGS +A K GF GW+ + Y+ M + Sbjct: 57 YAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSSLLDYLFAPMINI 116 Query: 112 TAVGKYIQFWYPEIPTW---VSAAVFFVVINAINLTNVTVFGEMEFWFXXXXXXXXXXXX 168 Y + P IP+W V+ F N +L +V F + Sbjct: 117 LLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIVVLQVVLIAVILGMV 176 Query: 169 XFGGWLLFSGNG-GPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA 227 +G +F G G G AS W + TG I+ FSF G + + + E Sbjct: 177 VYG---VFEGEGAGTLASTRPFWSGDAHVIPMITG----ATILCFSFTGFDGISNLSEET 229 Query: 228 DNPEQSIPKAT-NQVIYRILIFYIGSLAVLLSLMPWTRV-TADTSPFVLIFHELGDTFVA 285 + E+ IP+A + +IF + + L +R D S ++ + G F Sbjct: 230 KDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEIMLYVAGKAFQV 289 Query: 286 NAL---NIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKAL---ASVDKRGVPVNTILV 339 AL I VL + ++ + +R+++ + + G PK+ R +N ILV Sbjct: 290 GALIFSTITVLASGMAAHAGV----ARLMYVMGRDGVFPKSFFGYVHPKWRTPAMNIILV 345 Query: 340 SALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK 388 A+ + IN+ + + +V+ +N ++IS ++ +R K Sbjct: 346 GAIA---LLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNK 391 >b4132 transport of lysine/cadaverine (cadB) {Escherichia coli K12-MG1655} Length = 444 Score = 57.4 bits (137), Expect = 2e-009 Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 1/152 (0%) Query: 203 LVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPW 262 ++ + + +++F G+E ++ NP++++P AT I YI + VL + P Sbjct: 189 IIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIVYIAATQVLSGMYPS 248 Query: 263 TRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPK 322 + + A +PF + + + A ++ A L+ S + + A GN PK Sbjct: 249 SVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPK 308 Query: 323 ALASVDKRGVPVNTILVSAL-VTALCVLINYL 353 VD G+P +L++A+ +TAL +LI + Sbjct: 309 VYGEVDSNGIPKKGLLLAAVKMTALMILITLM 340 >b0692 putrescine transport protein (potE) {Escherichia coli K12-MG1655} Length = 439 Score = 49.7 bits (117), Expect = 4e-007 Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 14/209 (6%) Query: 172 GWLLFSGNGGPQASVSNLWDQGGFLPHG---FTGLVMMMAIIMFSFGGLELVGITAAEAD 228 GW FS P V + W+ PH F+ + +A+ +++F GLE + Sbjct: 168 GWFWFS----PTLYVDS-WN-----PHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVE 217 Query: 229 NPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANAL 288 NPE+++P A + YI S V+ ++P + T+PF L F ++ V + Sbjct: 218 NPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKVI 277 Query: 289 NIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPVNTILVSALV-TALC 347 +++ + + +++ + +G PK + V K PV +L ++ + L Sbjct: 278 MALMVMSCCGSLLGWQFTIAQVFKSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQSGLA 337 Query: 348 VLINYLAPESAFGLLMALVVSALVINWAM 376 ++ + S F +L+ L V +I + + Sbjct: 338 LMTISPSLNSQFNVLVNLAVVTNIIPYIL 366 >b4141 putative transport (yjeH) {Escherichia coli K12-MG1655} Length = 418 Score = 47.8 bits (112), Expect = 2e-006 Identities = 53/236 (22%), Positives = 101/236 (42%), Gaps = 27/236 (11%) Query: 201 TGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLM 260 TGL ++++ + F GLE A+E NPE+ P+A + + Y G V+L Sbjct: 184 TGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWGCTVVVLHFD 243 Query: 261 PW---TRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQ 317 + A V+ +G ++A + + A+L++Y + +R+++ AQ Sbjct: 244 AYGEKMAAAASLPKIVVQLFGVGALWIACVIGYLACFASLNIY---IQSFARLVWSQAQH 300 Query: 318 GNAPKALASVDKRGVP---VNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINW 374 N LA + R +P +N +L +V+ L + A E L+ ++ + Sbjct: 301 -NPDHYLARLSSRHIPNNALNAVLGCCVVSTLVI----HALEINLDALIIYANGIFIMIY 355 Query: 375 AMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVV----LVIMLMTPGM 426 + LA K + + LL +G +C+L +A+V L ++M G+ Sbjct: 356 LLCMLAGCKLLQGRYR---------LLAVVGGLLCVLLLAMVGWKSLYALIMLAGL 402 >b1492 acid sensitivity protein, putative transporter (xasA) {Escherichia coli K12-MG1655} Length = 511 Score = 46.6 bits (109), Expect = 3e-006 Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 34/248 (13%) Query: 203 LVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKA-TNQVIYRILIFYIGSLAVLLSLMP 261 LV+ +A I+ S+ G+E E NP + P A ++ I + +G L++ + ++P Sbjct: 204 LVVFVAFIL-SYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAM-VIP 261 Query: 262 WTRVTADTSPF----VLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQ 316 + VL+ H + + ++ ++L L+ S + SR ++ AQ Sbjct: 262 GNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQ 321 Query: 317 QGNAPKALASVDKRGVPVNTILVSALVTALCVLI-------NYLAPESAFGLLMALVVSA 369 + P A A ++K GVPV ++ ++T++ ++I N ++ A L + + + A Sbjct: 322 KNLLPAAFAKMNKNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCA 381 Query: 370 ---LVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAVVLVIMLMTPGM 426 L I + ++ L H +R P G + L VV ++ L+T M Sbjct: 382 YFMLFIGYIVLVLKHPDLKR------------TFNIPGGKGVKL----VVAIVGLLTSIM 425 Query: 427 AISVYLIP 434 A V +P Sbjct: 426 AFIVSFLP 433 Query= Z0123 transcriptional regulator for pyruvate dehydrogenase complex (pdhR) {Escherichia coli O157:H7 EDL933} (254 letters) Score E Sequences producing significant alignments: (bits) Value b0113 transcriptional regulator for pyruvate dehydrogenase compl... 445 e-126 b3604 transcriptional regulator (lldR) {Escherichia coli K12-MG1... 146 2e-036 b2980 transcriptional activator for glc operon (glcC) {Escherich... 100 7e-023 b4324 regulator for uxu operon (uxuR) {Escherichia coli K12-MG1655} 91 6e-020 b3226 putative FADA-type transcriptional regulator (yhcK) {Esche... 67 9e-013 b3094 negative regulator of exu regulon, exuT, uxaAC, and uxuB (... 62 5e-011 b3375 putative transcriptional regulator (yhfR) {Escherichia col... 59 4e-010 b0730 transcriptional regulator of succinylCoA synthetase operon... 47 1e-006 b4102 putative transcriptional regulator (phnF) {Escherichia col... 47 2e-006 b1187 negative regulator for fad regulon, and positive activator... 46 2e-006 b3872 putative transcriptional regulator (yihL) {Escherichia col... 45 4e-006 b3684 putative transcriptional regulator (yidP) {Escherichia col... 45 6e-006 >b0113 transcriptional regulator for pyruvate dehydrogenase complex (pdhR) {Escherichia coli K12-MG1655} Length = 254 Score = 445 bits (1144), Expect = e-126 Identities = 228/228 (100%), Positives = 228/228 (100%) Query: 1 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA 60 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA Sbjct: 1 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA 60 Query: 61 KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRST 120 KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRST Sbjct: 61 KGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRST 120 Query: 121 DEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN 180 DEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN Sbjct: 121 DEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQN 180 Query: 181 VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFI 228 VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFI Sbjct: 181 VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFI 228 >b3604 transcriptional regulator (lldR) {Escherichia coli K12-MG1655} Length = 258 Score = 146 bits (368), Expect = 2e-036 Identities = 84/223 (37%), Positives = 134/223 (60%), Gaps = 8/223 (3%) Query: 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69 +LSD + ++ LI E L G KLP ER+LA Q VSR SLREA+ +L ++G+LL R+G Sbjct: 7 RLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRG 66 Query: 70 GGTFV--QSSLW--QSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKE 125 GGTF+ + W Q+ PL L++D P+ +D+LE R+A+E A++AA+R+T DKE Sbjct: 67 GGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDILEARYAIEASTAWHAAMRATPGDKE 126 Query: 126 RIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185 +I+ A S D D S A +++ +A+ EA+HN+VLL +R +L +V+ + Sbjct: 127 KIQLCFE----ATLSEDPDIASQADVRFHLAIAEASHNIVLLQTMRGFFDVLQSSVKHSR 182 Query: 186 ELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFI 228 + +Y + ++ + +AI AG + AR+A HL+F+ Sbjct: 183 QRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAMMAHLSFV 225 >b2980 transcriptional activator for glc operon (glcC) {Escherichia coli K12-MG1655} Length = 254 Score = 100 bits (250), Expect = 7e-023 Identities = 64/222 (28%), Positives = 114/222 (51%), Gaps = 4/222 (1%) Query: 7 RQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLR 66 R+P + +V+ + +E LI++G L+ G+ LP ER L ++ SR +LRE + L +G++ Sbjct: 5 RRP-ICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIET 63 Query: 67 RQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKER 126 QG + V + PL+ L S P + YDLL+ R LEG +A AA T D Sbjct: 64 AQGRDSRVARLNRVQDTSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLGTQADFVV 123 Query: 127 IRELHHAIELAQQSG-DLDAESNAVLQ--YQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQ 183 I + + A ++ ++ +A L + +A+ +A+HN VL+ L+ + ++ +V Sbjct: 124 ITRCYEKMLAASENNKEISLIEHAQLDHAFHLAICQASHNQVLVFTLQSLTDLMFNSVFA 183 Query: 184 NFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225 + LY R + + RI+ A++ P A+ A+ H+ Sbjct: 184 SVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHV 225 >b4324 regulator for uxu operon (uxuR) {Escherichia coli K12-MG1655} Length = 257 Score = 91.3 bits (225), Expect = 6e-020 Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 3/151 (1%) Query: 22 LILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV-QSSLWQ 80 LI++ PGE+LPPERE+A+ DV+R +REA+ LE KGL+ R+G G +V +S Q Sbjct: 21 LIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRGAGIYVLDNSGSQ 80 Query: 81 SFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQS 140 + P + +D ++LL+ R LE A +AAL++T ED ++R+ E S Sbjct: 81 NTDSPDANVCND--AGPFELLQARQLLESNIAEFAALQATREDIVKMRQALQLEERELAS 138 Query: 141 GDLDAESNAVLQYQIAVTEAAHNVVLLHLLR 171 + + +Q+ +A+ EA HN +L+ L R Sbjct: 139 SAPGSSESGDMQFHLAIAEATHNSMLVELFR 169 >b3226 putative FADA-type transcriptional regulator (yhcK) {Escherichia coli K12-MG1655} Length = 263 Score = 67.4 bits (163), Expect = 9e-013 Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 11/225 (4%) Query: 6 IRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLL 65 + + KLS+++E++LE +I GE+LP EREL F+V RPS+REA+ L+ KGL+ Sbjct: 27 LARKKLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQ 86 Query: 66 RRQGGGTFVQSSLWQSFSDPLVELLSD---HPESQYDLLETRHALEGIAAYYAALRSTDE 122 G V + L + D HP + R E YAA +TD Sbjct: 87 INNGERARVSRPSADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATD- 145 Query: 123 DKERIRELHHAIELAQQSGDLDAE-SNAVLQYQIAVTEAAHNVVLLHL-LRCMEPMLAQN 180 E+I L A+E+ QS D +A + + + + E N + + + + ++ ++A Sbjct: 146 --EQIDLLAKALEINSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAAR 203 Query: 181 VRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225 + L+ + I +AI P+EA A HL Sbjct: 204 PTVTDQALHEHNN---VSYQQHIAIVDAIRRHDPDEADRALQSHL 245 >b3094 negative regulator of exu regulon, exuT, uxaAC, and uxuB (exuR) {Escherichia coli K12-MG1655} Length = 263 Score = 61.6 bits (148), Expect = 5e-011 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 14/229 (6%) Query: 2 AYSKIRQPK-LSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA 60 A+ +I +P+ L + L+ I +G G+KLP ER +A + +VSR +REAI LE Sbjct: 4 AHMEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEV 63 Query: 61 KGLLLRRQGGGTFVQSS--LWQSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALR 118 +G + R+G G V S+ Q +D +E + P ++LL+ R +E A +AA + Sbjct: 64 EGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGP---FELLQARQLIESNIAEFAATQ 120 Query: 119 STDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLA 178 T +D ++ AI+ + +S LQ+ I V A N L ++ M + Sbjct: 121 VTKQDIMKLM----AIQEQARGEQCFRDSEWDLQFHIQVALATQNSALAAIVEKMWTQRS 176 Query: 179 QNV--RQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225 N ++ E + SR + +I +A++ P A+ A +HL Sbjct: 177 HNPYWKKLHEHIDSR--TVDNWCDDHDQILKALIRKDPHAAKLAMWQHL 223 >b3375 putative transcriptional regulator (yhfR) {Escherichia coli K12-MG1655} Length = 265 Score = 58.5 bits (140), Expect = 4e-010 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 9/76 (11%) Query: 1 MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEA 60 + Y+ +RQ L D I +G + G+++P E EL Q++VSR ++R+AI L A Sbjct: 33 LLYATVRQRLLDD---------IAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVA 83 Query: 61 KGLLLRRQGGGTFVQS 76 G+L+R QG GTFVQS Sbjct: 84 DGVLIRWQGKGTFVQS 99 >b0730 transcriptional regulator of succinylCoA synthetase operon (farR) {Escherichia coli K12-MG1655} Length = 240 Score = 47.0 bits (110), Expect = 1e-006 Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 4/66 (6%) Query: 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69 +++D I +Q I G L+PG+ LP E L +F VSR ++R+A+++L + +L QG Sbjct: 9 QIADRIREQ----IARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQG 64 Query: 70 GGTFVQ 75 GT+V+ Sbjct: 65 SGTYVK 70 >b4102 putative transcriptional regulator (phnF) {Escherichia coli K12-MG1655} Length = 241 Score = 46.6 bits (109), Expect = 2e-006 Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 3/58 (5%) Query: 29 RPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPL 86 R G+ LP E++LA +F+V+R +LR AI +L KG + RRQG G V L + F PL Sbjct: 30 RCGDYLPAEQQLAARFEVNRHTLRRAIDQLVEKGWVQRRQGVGVLV---LMRPFDYPL 84 >b1187 negative regulator for fad regulon, and positive activator of fabA (fadR) {Escherichia coli K12-MG1655} Length = 239 Score = 46.2 bits (108), Expect = 2e-006 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 6/120 (5%) Query: 30 PGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVEL 89 PG LP EREL++ V+R +LRE +QRL G L + G T V ++ W++ ++E Sbjct: 27 PGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV-NNFWETSGLNILET 85 Query: 90 LS--DH---PESQYDLLETRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLD 144 L+ DH P+ +LL R + I A + D+ +E + + + A +LD Sbjct: 86 LARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELD 145 >b3872 putative transcriptional regulator (yihL) {Escherichia coli K12-MG1655} Length = 236 Score = 45.4 bits (106), Expect = 4e-006 Identities = 22/59 (37%), Positives = 36/59 (61%) Query: 16 EQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV 74 +++L+ + +G PG KLP EREL + + R +LR+A+ LEA+ + R+ G FV Sbjct: 12 KEKLDRWLKDGITTPGGKLPSERELGELLGIKRMTLRQALLNLEAESKIFRKDRKGWFV 70 >b3684 putative transcriptional regulator (yidP) {Escherichia coli K12-MG1655} Length = 238 Score = 44.7 bits (104), Expect = 6e-006 Identities = 21/41 (51%), Positives = 32/41 (78%) Query: 34 LPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFV 74 LP E++LA++F VSR ++R+AI L A GL++RR G GT++ Sbjct: 25 LPGEKKLAEEFAVSRMTIRKAIDLLVAWGLVVRRHGSGTYL 65 Query= Z0124 pyruvate dehydrogenase (decarboxylase component) (aceE) {Escherichia coli O157:H7 EDL933} (887 letters) Score E Sequences producing significant alignments: (bits) Value b0114 pyruvate dehydrogenase (decarboxylase component) (aceE) [1... 1799 0.0 b2935 transketolase 1 isozyme (tktA) [2.2.1.1] {Escherichia coli... 48 3e-006 >b0114 pyruvate dehydrogenase (decarboxylase component) (aceE) [1.2.4.1] {Escherichia coli K12-MG1655} Length = 887 Score = 1799 bits (4660), Expect = 0.0 Identities = 887/887 (100%), Positives = 887/887 (100%) Query: 1 MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNY 60 MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNY Sbjct: 1 MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEARKGGVNVAAGTGISNY 60 Query: 61 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDV 120 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDV Sbjct: 61 INTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDV 120 Query: 121 CFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPH 180 CFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPH Sbjct: 121 CFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPH 180 Query: 181 PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK 240 PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK Sbjct: 181 PKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESK 240 Query: 241 GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD 300 GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD Sbjct: 241 GAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWD 300 Query: 301 ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL 360 ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL Sbjct: 301 ELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWAL 360 Query: 361 NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRH 420 NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRH Sbjct: 361 NRGGHDPKKIYAAFKKAQETKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRH 420 Query: 421 IRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQ 480 IRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQ Sbjct: 421 IRDRFNVPVSDADIEKLPYITFPEGSEEHTYLHAQRQKLHGYLPSRQPNFTEKLELPSLQ 480 Query: 481 DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS 540 DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS Sbjct: 481 DFGALLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYS 540 Query: 541 PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY 600 PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY Sbjct: 541 PNGQQYTPQDREQVAYYKEDEKGQILQEGINELGAGCSWLAAATSYSTNNLPMIPFYIYY 600 Query: 601 SMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD 660 SMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD Sbjct: 601 SMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYD 660 Query: 661 PAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI 720 PAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI Sbjct: 661 PAYAYEVAVIMHDGLERMYGEKQENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETI 720 Query: 721 EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHP 780 EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHP Sbjct: 721 EGSKGKVQLLGSGSILRHVREAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHP 780 Query: 781 LETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH 840 LETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH Sbjct: 781 LETPRVPYIAQVMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRH 840 Query: 841 HFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA 887 HFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA Sbjct: 841 HFEVDASYVVVAALGELAKRGEIDKKVVADAIAKFNIDADKVNPRLA 887 >b2935 transketolase 1 isozyme (tktA) [2.2.1.1] {Escherichia coli K12-MG1655} Length = 663 Score = 47.8 bits (112), Expect = 3e-006 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 21/222 (9%) Query: 80 RRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQ----DGG 135 + + +AIR ++ V +A GH + A I +V + F + + D Sbjct: 5 KELANAIRALSMDAVQKAKS------GHPGAPMGMADIAEVLWRDFLKHNPQNPSWADRD 58 Query: 136 DLVYFQGHISPGVYARAFLEGR-LTQEQLDNFRQEVHGNGLSSYPHPKL-MPEFWQFPTV 193 V GH S +Y+ L G L E+L NFRQ +H + HP++ + T Sbjct: 59 RFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQ-LHSK---TPGHPEVGYTAGVETTTG 114 Query: 194 SMGLGPIGAIYQA---KFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREK 250 +G G A+ A K L +R D YAF+GDG M E S ++A K Sbjct: 115 PLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLK 174 Query: 251 LDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIK 292 L L+ + N +DG V G ++ FE GW+VI+ Sbjct: 175 LGKLIAFYDDNGISIDGHV--EGWFTDDTAMRFEAYGWHVIR 214 Query= Z0125 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) (aceF) {Escherichia coli O157:H7 EDL933} (630 letters) Score E Sequences producing significant alignments: (bits) Value b0115 pyruvate dehydrogenase (dihydrolipoyltransacetylase compon... 943 0.0 b0727 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase ... 152 8e-038 >b0115 pyruvate dehydrogenase (dihydrolipoyltransacetylase component) (aceF) [2.3.1.12] {Escherichia coli K12-MG1655} Length = 630 Score = 943 bits (2438), Expect = 0.0 Identities = 513/630 (81%), Positives = 513/630 (81%) Query: 1 MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS 60 MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS Sbjct: 1 MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGIVKEIKVS 60 Query: 61 VGDKTQTGALIMIFDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNVPDIGSDEVEV 120 VGDKTQTGALIMIFDS VNVPDIGSDEVEV Sbjct: 61 VGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAAAAAKDVNVPDIGSDEVEV 120 Query: 121 TEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNTGDKVSTGSLIMVFXXX 180 TEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVN GDKVSTGSLIMVF Sbjct: 121 TEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVSTGSLIMVFEVA 180 Query: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT 240 NVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT Sbjct: 181 GEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDEVEVTEVMVKVGDKVAAEQSLIT 240 Query: 241 VEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGXXXXXXXXXXXXXXXXXX 300 VEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG Sbjct: 241 VEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQEAAAPAPA 300 Query: 301 XXXXXXXXXXXXXXXGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILRED 360 GKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILRED Sbjct: 301 AKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIRRLAREFGVNLAKVKGTGRKGRILRED 360 Query: 361 VQAYVXXXXXXXXXXXXXXXXXXXXMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNW 420 VQAYV MLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNW Sbjct: 361 VQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSKFGEIEEVELGRIQKISGANLSRNW 420 Query: 421 VMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSS 480 VMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSS Sbjct: 421 VMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLDVKITPVVFIMKAVAAALEQMPRFNSS 480 Query: 481 LSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTA 540 LSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTA Sbjct: 481 LSEDGQRLTLKKYINIGVAVDTPNGLVVPVFKDVNKKGIIELSRELMTISKKARDGKLTA 540 Query: 541 GEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLS 600 GEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLS Sbjct: 541 GEMQGGCFTISSIGGLGTTHFAPIVNAPEVAILGVSKSAMEPVWNGKEFVPRLMLPISLS 600 Query: 601 FDHRVIDGADGARFITIINNTLSDIRRLVM 630 FDHRVIDGADGARFITIINNTLSDIRRLVM Sbjct: 601 FDHRVIDGADGARFITIINNTLSDIRRLVM 630 >b0727 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) (sucB) {Escherichia coli K12-MG1655} Length = 405 Score = 152 bits (383), Expect = 8e-038 Identities = 119/424 (28%), Positives = 197/424 (46%), Gaps = 32/424 (7%) Query: 211 VPDIGGDEVEVTEVM--VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 268 VPD+ + T K GD V ++ L+ +E DK +EVPA G++ + + G Sbjct: 8 VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 67 Query: 269 VKTGSLIMIFEVEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKSEFAENDAYVH 328 V + ++ EG E NDA Sbjct: 68 VTSRQILGRLR-EGNSAGKETSAKSEEKASTPAQRQQ----------ASLEEQNNDAL-- 114 Query: 329 ATPLIRRLAREFGVNLAKVKGTGRKGRILREDVQAYVXXXXXXXXXXXXXXXXXXXXMLP 388 +P IRRL E ++ + +KGTG GR+ REDV+ ++ + Sbjct: 115 -SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAA 173 Query: 389 WPKVDFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEA 448 + + V + R++K L +T F++ ++ + RKQ E Sbjct: 174 RSE---------KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAF 224 Query: 449 AKRKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV 508 KR +++ + F +KAV AL++ P N+S+ DG + Y ++ +AV TP GLV Sbjct: 225 EKRH-GIRLGFMSFYVKAVVEALKRYPEVNASI--DGDDVVYHNYFDVSMAVSTPRGLVT 281 Query: 509 PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAP 568 PV +DV+ G+ ++ +++ ++ K RDGKLT ++ GG FTI++ G G+ PI+N P Sbjct: 282 PVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPP 341 Query: 569 EVAILGVSKSAMEPV-WNGK-EFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIR 626 + AILG+ P+ NG+ E +P M+ ++LS+DHR+IDG + F+ I L D Sbjct: 342 QSAILGMHAIKDRPMAVNGQVEILP--MMYLALSYDHRLIDGRESVGFLVTIKELLEDPT 399 Query: 627 RLVM 630 RL++ Sbjct: 400 RLLL 403 Query= Z0126 lipoamide dehydrogenase (NADH) component of 2-oxodehydrogenase and (lpdA) {Escherichia coli O157:H7 EDL933} (474 letters) Score E Sequences producing significant alignments: (bits) Value b0116 lipoamide dehydrogenase (NADH); component of 2-oxodehydrog... 907 0.0 b0304 putative oxidoreductase (ykgC) {Escherichia coli K12-MG1655} 184 1e-047 b3962 putative oxidoreductase (udhA) [1.-.-.-] {Escherichia coli... 166 4e-042 b3500 glutathione oxidoreductase (gor) [1.6.4.2] {Escherichia co... 146 3e-036 b3365 nitrite reductase (NAD(P)H) subunit (nirB) [1.6.6.4] {Esch... 54 2e-008 b0606 alkyl hydroperoxide reductase, F52a subunit; detoxificatio... 46 6e-006 b2711 putative oxidoreductase (ygbD) {Escherichia coli K12-MG1655} 45 8e-006 >b0116 lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex (lpdA) [1.8.1.4] {Escherichia coli K12-MG1655} Length = 474 Score = 907 bits (2344), Expect = 0.0 Identities = 459/474 (96%), Positives = 459/474 (96%) Query: 1 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA 60 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA Sbjct: 1 MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVA 60 Query: 61 KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT 120 KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT Sbjct: 61 KVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFT 120 Query: 121 GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV 180 GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV Sbjct: 121 GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV 180 Query: 181 MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA 240 MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA Sbjct: 181 MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA 240 Query: 241 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ 300 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ Sbjct: 241 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ 300 Query: 301 LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV 360 LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV Sbjct: 301 LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWV 360 Query: 361 GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNXXX 420 GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTN Sbjct: 361 GLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGE 420 Query: 421 XXXXXXXXXXXXCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK 474 CDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK Sbjct: 421 LLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEVFEGSITDLPNPKAKKK 474 >b0304 putative oxidoreductase (ykgC) {Escherichia coli K12-MG1655} Length = 450 Score = 184 bits (466), Expect = 1e-047 Identities = 127/454 (27%), Positives = 221/454 (48%), Gaps = 30/454 (6%) Query: 6 KTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTL-GGVCLNVGCIPSKALLHVAKVIE 64 K Q V++G G AG + A A G ++E+ N + GG C+N+GCIP+K L+H A+ Sbjct: 12 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQ--- 68 Query: 65 EAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTG-GLAGMAKGRKVKVVNGLGKFTGAN 123 +H TD + K +V+N L +A + V++G +F + Sbjct: 69 ------QH--------TDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNH 114 Query: 124 TLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPH--EDPRIWDSTDALELKEVPERLLVM 181 +L V G I+ + I G++ + +P IP P ++DST L LKE+P L ++ Sbjct: 115 SLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYDSTGLLNLKELPGHLGIL 173 Query: 182 GGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIV-KVFTKRISKKFNLMLETKVTA 240 GGG IG+E +++ GS++ ++E +P D+DI + T + +++L V Sbjct: 174 GGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVER 233 Query: 241 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQ 300 + E+ + V E + DA+L+A GR P +L AG+ V++RG I VDK+ Sbjct: 234 ISHHENQVQVHSEHAQLAV-----DALLIASGRQPATASLHPENAGIAVNERGAIVVDKR 288 Query: 301 LRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVI--AGKKHYFDPKVIPSIAYTEPEVA 358 L T +I+A+GD+ G + + + + + + GK+ D K +P + P ++ Sbjct: 289 LHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLS 348 Query: 359 WVGLTEKEAKEKGISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNX 418 VG+TE++A+E G + T P AA RA + G+ K I D ++ R++G +++ + Sbjct: 349 RVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRMLGASLLCVDS 408 Query: 419 XXXXXXXXXXXXXXCDAEDIALTIHAHPTLHESV 452 + I HP++ ES+ Sbjct: 409 HEMINIVKMVMDAGLPYSILRDQIFTHPSMSESL 442 >b3962 putative oxidoreductase (udhA) [1.-.-.-] {Escherichia coli K12-MG1655} Length = 444 Score = 166 bits (419), Expect = 4e-042 Identities = 107/389 (27%), Positives = 193/389 (49%), Gaps = 15/389 (3%) Query: 29 GLETVIVERYNTLGGVCLNVGCIPSKALLH-VAKVIE--EAKALAEHGIVFGEPKTDIDK 85 G ++ERY +GG C + G IPSKAL H V+++IE + ++H + DI Sbjct: 7 GARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADI-- 64 Query: 86 IRTWKEKVINQLTGGLAGMAKGRKVKVVNGLGKFTGANTLEVEGENGKT-VINFDNAIIA 144 + VINQ T G + +++ G +F +TL ++ +G + + +IA Sbjct: 65 -LNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHTLALDCPDGSVETLTAEKFVIA 123 Query: 145 AGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVV 204 GSRP + PRI+DS L + P +L+ G G+IG E +++ + ++D++ Sbjct: 124 CGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLI 183 Query: 205 EMFDQVIPAADKDIVKVFTKRI-SKKFNLMLETKVTAVEAKEDGIYVTME-GKKAPAEPQ 262 D+++ D+++ + + + + +E +DG+ + ++ GKK A Sbjct: 184 NTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKA--- 240 Query: 263 RYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAH 322 D +L A GR N +L G+E D RG ++V+ +T PH++A+GD++G P LA Sbjct: 241 --DCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLAS 298 Query: 323 KGVHEGHVAAE-VIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPW 381 +G +AA+ ++ G+ + IP+ YT PE++ VG TE++ + YE + Sbjct: 299 AAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQF 358 Query: 382 AASGRAIASDCADGMTKLIFDKESHRVIG 410 RA G K++F +E+ ++G Sbjct: 359 KHLARAQIVGMNVGTLKILFHRETKEILG 387 >b3500 glutathione oxidoreductase (gor) [1.6.4.2] {Escherichia coli K12-MG1655} Length = 450 Score = 146 bits (369), Expect = 3e-036 Identities = 120/451 (26%), Positives = 204/451 (45%), Gaps = 24/451 (5%) Query: 10 VVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGVCLNVGCIPSKALLHVAKVIEEAKAL 69 + +G G G ++ R A G + ++E LGG C+NVGC+P K + H A++ E A+ Sbjct: 8 IAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTCVNVGCVPKKVMWHAAQIRE---AI 63 Query: 70 AEHGIVFGEPKTDIDKIRTWKEKV------INQLTGGLAGMAKGRKVKVVNGLGKFTGAN 123 +G +G T I+K W+ + I+++ + V V+ G +F A Sbjct: 64 HMYGPDYGFDTT-INKFN-WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAK 121 Query: 124 TLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLVMGG 183 TLEV GE I D+ +IA G RP P IP + I DS L +PER+ V+G Sbjct: 122 TLEVNGET----ITADHILIATGGRPSH-PDIPGVEYGI-DSDGFFALPALPERVAVVGA 175 Query: 184 GIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTAVEA 243 G I +E+ V + LG++ + + + D I + + ++ + + + Sbjct: 176 GYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVMNAEGPQLHTNAIPKAVV 235 Query: 244 KEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDKQLRT 303 K +T+E + +E D ++ AIGR P N++ AGV+ +++G+I VDK T Sbjct: 236 KNTDGSLTLELEDGRSET--VDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNT 293 Query: 304 NVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK--HYFDPKVIPSIAYTEPEVAWVG 361 N+ I+A+GD G L V G +E + K + D IP++ ++ P + VG Sbjct: 294 NIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVG 353 Query: 362 LTEKEAKEKGISYETATF--PWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNXX 419 LTE +A+E+ + + + A A+ + KL+ +++G +G Sbjct: 354 LTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMD 413 Query: 420 XXXXXXXXXXXXXCDAEDIALTIHAHPTLHE 450 +D T+ HPT E Sbjct: 414 EMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444 >b3365 nitrite reductase (NAD(P)H) subunit (nirB) [1.6.6.4] {Escherichia coli K12-MG1655} Length = 847 Score = 53.9 bits (128), Expect = 2e-008 Identities = 55/228 (24%), Positives = 97/228 (42%), Gaps = 15/228 (6%) Query: 127 VEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP------RIWDSTDALE-LKEVPERLL 179 + G+TV +D I+A GS P +P I D R + +A+E +R Sbjct: 92 IHSSAGRTVF-YDKLIMATGSYP-WIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGA 149 Query: 180 VMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVT 239 V+GGG++GLE LG + V+E ++ + +R + + + T Sbjct: 150 VVGGGLLGLEAAGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKN 209 Query: 240 AVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIRVDK 299 +E ++G+ + A D ++ + G P K A + G++V RG I ++ Sbjct: 210 TLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPRDKL--ATQCGLDVAPRGGIVIND 267 Query: 300 QLRTNVPHIFAIGDIVGQPM----LAHKGVHEGHVAAEVIAGKKHYFD 343 +T+ P I+AIG+ L G VA + I G ++ F+ Sbjct: 268 SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFE 315 >b0606 alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (ahpF) {Escherichia coli K12-MG1655} Length = 531 Score = 45.8 bits (107), Expect = 6e-006 Identities = 78/322 (24%), Positives = 126/322 (39%), Gaps = 55/322 (17%) Query: 9 VVVLGAGPAGYSAAFRCADLGLETVIV-ERYNTLGGVCLNVGCIPSKALLHVAKVIEEAK 67 V+++G+GPAG +AA A G+ T ++ ER+ GG L+ I + + + + A Sbjct: 225 VLIVGSGPAGAAAAIYSARKGIRTGLMGERF---GGQILDTVDIENYISVPKTEGQKLAG 281 Query: 68 ALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGL-------AGMAKGRKVKVVNGLGKFT 120 AL H E D+ ++ + + + GGL + K R + V G K+ Sbjct: 282 ALKVH---VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATG-AKWR 337 Query: 121 GANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDPRIWDSTDALELKEVPERLLV 180 N V GE+ R + + PH D ++ +R+ V Sbjct: 338 NMN---VPGED--------------QYRTKGVTYCPHCDGPLFKG----------KRVAV 370 Query: 181 MGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDIVKVFTKRISKKFNLMLETKVTA 240 +GGG G+E + + ++E P D V R K +++L + T Sbjct: 371 IGGGNSGVEAAIDLAGIVEHVTLLEF----APEMKADQVLQDKLRSLKNVDIILNAQTT- 425 Query: 241 VEAKEDGIYVT----MEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGFIR 296 E K DG V + + V IG +PN L+ VE + G I Sbjct: 426 -EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLE---GAVERNRMGEII 481 Query: 297 VDKQLRTNVPHIFAIGDIVGQP 318 +D + TNV +FA GD P Sbjct: 482 IDAKCETNVKGVFAAGDCTTVP 503 >b2711 putative oxidoreductase (ygbD) {Escherichia coli K12-MG1655} Length = 377 Score = 45.4 bits (106), Expect = 8e-006 Identities = 35/139 (25%), Positives = 76/139 (54%), Gaps = 10/139 (7%) Query: 177 RLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPA-ADKDIVKVFTKRISKK-FNLML 234 R+L++GGG+IG E+ + G + +++ ++ + ++ R+++ +L+L Sbjct: 143 RVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLL 202 Query: 235 ETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGKAGVEVDDRGF 294 ++++ +E + GI T++ ++ DAV+ A G P + A +AG+ + +RG Sbjct: 203 KSQLQGLEKTDSGIQATLDRQR----NIEVDAVIAATGLRP--ETALARRAGLTI-NRG- 254 Query: 295 IRVDKQLRTNVPHIFAIGD 313 + VD L+T+ I+A+GD Sbjct: 255 VCVDSYLQTSNTDIYALGD 273 Query= Z0127 putative membrane protein (yacH) {Escherichia coli O157:H7 EDL933} (617 letters) Score E Sequences producing significant alignments: (bits) Value b0117 putative membrane protein (yacH) {Escherichia coli K12-MG1... 979 0.0 >b0117 putative membrane protein (yacH) {Escherichia coli K12-MG1655} Length = 617 Score = 979 bits (2531), Expect = 0.0 Identities = 507/617 (82%), Positives = 508/617 (82%) Query: 1 MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAPVETQSTQLAVSDXXXXXXXXXXX 60 MKMTLPFKPHVLALICSAGLCAAS GLYIKSRTVEAPVE QSTQLAVSD Sbjct: 1 MKMTLPFKPHVLALICSAGLCAASTGLYIKSRTVEAPVEPQSTQLAVSDAAAVTFPATVS 60 Query: 61 XXXXXXXXXKSAFSTAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQ 120 KSAFSTAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQ Sbjct: 61 APPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTYPTNVAQAVQWSHDNPLKQ 120 Query: 121 GDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQ 180 GDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQ Sbjct: 121 GDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDSVQRLRQ 180 Query: 181 LAQQTGSLKSSTEXXXXXXXXXXXXXXXXXXXXXXXSNTVSTANPVITEPATTVISIEPG 240 LAQQTGSLKSSTE SNTV TANPVITEPATTVISIEP Sbjct: 181 LAQQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSNTVLTANPVITEPATTVISIEPA 240 Query: 241 NPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFVDSFVRGFGYSMGVATTYALFSS 300 NPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFVDSFVRGFGYSMGVATTYALFSS Sbjct: 241 NPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEPFVDSFVRGFGYSMGVATTYALFSS 300 Query: 301 IXXXXXXXXXXXXXXXXXXXXXXXXXXXNGWQHNGDNINIDVNNFNRITGEHLTDKNMAW 360 I NGWQHNGDNINIDVNNFNRITGEHLTDKNMAW Sbjct: 301 IDWDDDDHDHHHHDNDDYHHHDGGHRDGNGWQHNGDNINIDVNNFNRITGEHLTDKNMAW 360 Query: 361 RHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDXXXXXXXXXXXXXTHAAPV 420 RHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRD THAAPV Sbjct: 361 RHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDSQRQAAANQFQQRTHAAPV 420 Query: 421 ITRDTQRQAAAQRFNEAEHYGSYDDFRDFSRRQPLTQQQKDAARQRYQSASPEQRQAVHE 480 ITRDTQRQAAAQRFNEAEHYGSYDDF DFSRRQPLTQQQKDAARQRYQSASPEQRQAV E Sbjct: 421 ITRDTQRQAAAQRFNEAEHYGSYDDFHDFSRRQPLTQQQKDAARQRYQSASPEQRQAVRE 480 Query: 481 KMQTXXXXXXXXXXXXXXXXXASPEQRQAVREKMQTNPQIQQRRDAARERIQSASPEQRQ 540 +MQT ASPEQRQAVREKMQTNPQ QQRRDAARERIQSASPEQRQ Sbjct: 481 RMQTNPKIQQRREAARERIQSASPEQRQAVREKMQTNPQNQQRRDAARERIQSASPEQRQ 540 Query: 541 VFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTARLNNEQR 600 VFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHT RLNNEQR Sbjct: 541 VFKEKVQQRPLNQQQRDNARQRVQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQR 600 Query: 601 SAVRERLSERGARRLER 617 SAV ERLSERGARRLER Sbjct: 601 SAVCERLSERGARRLER 617 Query= Z0128 aconitate hydrase B (acnB) {Escherichia coli O157:H7 EDL933} (865 letters) Score E Sequences producing significant alignments: (bits) Value b0118 aconitate hydrase B (acnB) [4.2.1.3] {Escherichia coli K12... 1630 0.0 b0072 3-isopropylmalate isomerase (dehydratase) subunit (leuC) [... 70 8e-013 >b0118 aconitate hydrase B (acnB) [4.2.1.3] {Escherichia coli K12-MG1655} Length = 865 Score = 1630 bits (4221), Expect = 0.0 Identities = 820/865 (94%), Positives = 821/865 (94%) Query: 1 MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA 60 MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA Sbjct: 1 MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEFLLDLLTNRVPPGVDEA 60 Query: 61 AYVKAGFLAAVAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS 120 AYVKAGFLAA+AKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS Sbjct: 61 AYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPLIDALDDAKLAPIAAKALS 120 Query: 121 HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD 180 HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD Sbjct: 121 HTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRPALAEKLTVTVFKVTGETNTD 180 Query: 181 DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV 240 DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV Sbjct: 181 DLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVGPIKQIEALQQKGFPLAYVGDVV 240 Query: 241 GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN 300 GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN Sbjct: 241 GTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGGKIAPIFFNTMEDAGALPIEVDVSN 300 Query: 301 LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAXXXXXXXXXXXXTTKAREA 360 LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRA TTKAREA Sbjct: 301 LNMGDVIDVYPYKGEVRNHETGELLATFELKTDVLIDEVRAGGRIPLIIGRGLTTKAREA 360 Query: 361 LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM 420 LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM Sbjct: 361 LGLPHSDVFRQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPM 420 Query: 421 TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH 480 TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH Sbjct: 421 TRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRPGDGVIH 480 Query: 481 SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM 540 SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM Sbjct: 481 SWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKM 540 Query: 541 QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA 600 QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA Sbjct: 541 QPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASA 600 Query: 601 ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWXXXXXXXXX 660 ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKW Sbjct: 601 ERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEA 660 Query: 661 XXXXXXXXXXXIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA 720 IDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA Sbjct: 661 DADAEYAAVIDIDLADIKEPILCAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAA 720 Query: 721 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA 780 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA Sbjct: 721 GKLLDAHKGQLPTRLWVAPPTRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVA 780 Query: 781 DGATVVSTSTRNFPNRLGTGANVFXXXXXXXXXXXXIGKLPTPEEYQTYVAQVDKTAVDT 840 DGATVVSTSTRNFPNRLGTGANVF IGKLPTPEEYQTYVAQVDKTAVDT Sbjct: 781 DGATVVSTSTRNFPNRLGTGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDT 840 Query: 841 YRYLNFNQLSQYTEKADGVIFQTAV 865 YRYLNFNQLSQYTEKADGVIFQTAV Sbjct: 841 YRYLNFNQLSQYTEKADGVIFQTAV 865 >b0072 3-isopropylmalate isomerase (dehydratase) subunit (leuC) [4.2.1.33] {Escherichia coli K12-MG1655} Length = 466 Score = 69.7 bits (169), Expect = 8e-013 Identities = 85/353 (24%), Positives = 132/353 (37%), Gaps = 42/353 (11%) Query: 474 PGDGVIHSW--LNRMLLPDTVGTGGDSHTRFPIG---ISFPAGSGLVAFAAATGVMPLDM 528 P G++H + LP GDSHT ++F G+ V AT + Sbjct: 103 PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQGR 162 Query: 529 PESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEI--EGLPD 586 +++ + +GK PGIT +D+V AI + K G +G ++E E + D Sbjct: 163 AKTMKIEVQGKAAPGITAKDIVLAI-----------IGKTGSAG-GTGHVVEFCGEAIRD 210 Query: 587 LKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEGYGDRRTLERRIQ 646 L +E L + + E A + + E Y+ + K + + D + +Q Sbjct: 211 LSMEGRMTLCNMAIEMGAKAGLVAPD-ETTFNYVKGRLHAPK---GKDFDDAVAYWKTLQ 266 Query: 647 GMEKWXXXXXXXXXXXXXXXXXXXXIDLADIKEPILCAPNDPDDARPLSAVQGEK----- 701 E + + P+ A P+ EK Sbjct: 267 TDEGATFDTVVTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYM 326 Query: 702 ------------IDEVFIGSCMTN-IGHFRAAGKLLDAHKGQLPTRLWVAPPTRMDAAQL 748 ID+VFIGSC + I RAA ++ K + V P + AQ Sbjct: 327 GLKPGIPLTEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQA 386 Query: 749 TEEGYYSVFGKSGARIEIPGCSLCMG-NQARVADGATVVSTSTRNFPNRLGTG 800 EG +F ++G +PGCS+C+ N R+ G STS RNF R G G Sbjct: 387 EAEGLDKIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRG 439 Query= Z0129 orf, hypothetical protein (yacL) {Escherichia coli O157:H7 EDL933} (136 letters) Score E Sequences producing significant alignments: (bits) Value b0119 orf, hypothetical protein (yacL) {Escherichia coli K12-MG1... 282 6e-078 >b0119 orf, hypothetical protein (yacL) {Escherichia coli K12-MG1655} Length = 136 Score = 282 bits (721), Expect = 6e-078 Identities = 136/136 (100%), Positives = 136/136 (100%) Query: 1 MAQCDFGALPGAEEHTMDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ 60 MAQCDFGALPGAEEHTMDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ Sbjct: 1 MAQCDFGALPGAEEHTMDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ 60 Query: 61 AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVE 120 AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVE Sbjct: 61 AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCGVE 120 Query: 121 DFLQVVAAYRNFVQQK 136 DFLQVVAAYRNFVQQK Sbjct: 121 DFLQVVAAYRNFVQQK 136 Query= Z0130 S-adenosylmethionine decarboxylase (speD) {Escherichia coli O157:H7 EDL933} (264 letters) Score E Sequences producing significant alignments: (bits) Value b0120 S-adenosylmethionine decarboxylase (speD) [4.1.1.50] {Esch... 543 e-156 >b0120 S-adenosylmethionine decarboxylase (speD) [4.1.1.50] {Escherichia coli K12-MG1655} Length = 264 Score = 543 bits (1399), Expect = e-156 Identities = 264/264 (100%), Positives = 264/264 (100%) Query: 1 MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIG 60 MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIG Sbjct: 1 MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYNANRLTEILSETCSIIG 60 Query: 61 ANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYP 120 ANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYP Sbjct: 61 ANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLPETVVAHLDKSHICVHTYP 120 Query: 121 ESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHF 180 ESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHF Sbjct: 121 ESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDIVTIDYRVRGFTRDINGMKHF 180 Query: 181 IDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSE 240 IDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSE Sbjct: 181 IDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKMLLKEFDLKHYMFHTKPEDLTDSE 240 Query: 241 RQEITAALWKEMREIYYGRNMPAV 264 RQEITAALWKEMREIYYGRNMPAV Sbjct: 241 RQEITAALWKEMREIYYGRNMPAV 264 Query= Z0131 spermidine synthase = putrescine aminopropyltransferase (speE) {Escherichia coli O157:H7 EDL933} (288 letters) Score E Sequences producing significant alignments: (bits) Value b0121 spermidine synthase = putrescine aminopropyltransferase (s... 597 e-172 >b0121 spermidine synthase = putrescine aminopropyltransferase (speE) [2.5.1.16] {Escherichia coli K12-MG1655} Length = 288 Score = 597 bits (1538), Expect = e-172 Identities = 287/288 (99%), Positives = 288/288 (100%) Query: 1 MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE 60 MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE Sbjct: 1 MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFGRVMALDGVVQTTERDE 60 Query: 61 FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120 FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY Sbjct: 61 FIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQY 120 Query: 121 LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR 180 LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR Sbjct: 121 LPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKR 180 Query: 181 CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND 240 CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND Sbjct: 181 CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWATDND 240 Query: 241 ALRHLSTEIIQARFLASGLKCRYYNPAVHTAAFALPQYLQDALASQPS 288 ALRHLSTEIIQARFLASGLKCRYYNPA+HTAAFALPQYLQDALASQPS Sbjct: 241 ALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALPQYLQDALASQPS 288 Query= Z0132 orf Unknown function (yacC) {Escherichia coli O157:H7 EDL933} (156 letters) Score E Sequences producing significant alignments: (bits) Value b0122 orf, hypothetical protein (yacC) {Escherichia coli K12-MG1... 310 4e-086 >b0122 orf, hypothetical protein (yacC) {Escherichia coli K12-MG1655} Length = 156 Score = 310 bits (793), Expect = 4e-086 Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MSIVLPLTGRSSRRHNLIDNNGRRLARSVLTFIFFKPLVEAMKTFFRTVLFGSLMAVCAN 60 MSIVLPLTGRSSRRHNLIDNNGRRLARSVLTFIFFKPLVEAMKTFFRTVLFGSLMAVCAN Sbjct: 1 MSIVLPLTGRSSRRHNLIDNNGRRLARSVLTFIFFKPLVEAMKTFFRTVLFGSLMAVCAN 60 Query: 61 SYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMK 120 SYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMK Sbjct: 61 SYALSESEAEDMADLTAVFVFLKNDCGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMK 120 Query: 121 ALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK 156 ALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK Sbjct: 121 ALGEDSYRDLSGIGIPVAKKCKALARDSLSLLAYVK 156 Query= Z0133 orf, hypothetical protein (yacK) {Escherichia coli O157:H7 EDL933} (516 letters) Score E Sequences producing significant alignments: (bits) Value b0123 orf, hypothetical protein (yacK) {Escherichia coli K12-MG1... 944 0.0 b3017 suppressor of ftsI (sufI) {Escherichia coli K12-MG1655} 223 3e-059 >b0123 orf, hypothetical protein (yacK) {Escherichia coli K12-MG1655} Length = 516 Score = 944 bits (2441), Expect = 0.0 Identities = 470/516 (91%), Positives = 471/516 (91%) Query: 1 MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG 60 MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG Sbjct: 1 MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG 60 Query: 61 EKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXXX 120 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVD Sbjct: 61 GKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDGGPQGIIP 120 Query: 121 XXXKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD 180 KRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD Sbjct: 121 PGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDD 180 Query: 181 VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN 240 VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN Sbjct: 181 VPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGCN 240 Query: 241 ARSLNFATSDNRPLYVIASDGGLLPEPVKVNELPVLMGERFEVLVEVNDNKPFDLVTLPV 300 ARSLNFATSDNRPLYVIASDGGLLPEPVKV+ELPVLMGERFEVLVEVNDNKPFDLVTLPV Sbjct: 241 ARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVLMGERFEVLVEVNDNKPFDLVTLPV 300 Query: 301 SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSXXXXXX 360 SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLS Sbjct: 301 SQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLSSLPALPSLEGLTVRKLQLSMDPMLD 360 Query: 361 XXXXXXXXEKYGDQAMVGMDHSQXXXXXXXXXXXXXXXXXKFDFHHANKINGQAFDMNKP 420 EKYGDQAM GMDHSQ KFDFHHANKINGQAFDMNKP Sbjct: 361 MMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAFDMNKP 420 Query: 421 MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS 480 MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS Sbjct: 421 MFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVEGNVS 480 Query: 481 EVLVKFNHDAPKERAYMAHCHLLEHEDTGMMLGFTV 516 EVLVKFNHDAPKE AYMAHCHLLEHEDTGMMLGFTV Sbjct: 481 EVLVKFNHDAPKEHAYMAHCHLLEHEDTGMMLGFTV 516 >b3017 suppressor of ftsI (sufI) {Escherichia coli K12-MG1655} Length = 470 Score = 223 bits (567), Expect = 3e-059 Identities = 159/515 (30%), Positives = 239/515 (46%), Gaps = 64/515 (12%) Query: 1 MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDARNRIQLTIGAGQSTFG 60 + RR F++ S A A+PL +A A ++ LP+P LL + + +T+ +F Sbjct: 3 LSRRQFIQASGIALCAGAVPL--KASAAGQQQPLPVPPLLESRRGQPLFMTVQRAHWSFT 60 Query: 61 EKT-ATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVPGEVDXXXXXXX 119 T A+ WG NG LGP +++ +G V + N+LTE ++ GL+VPG + Sbjct: 61 PGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMM 120 Query: 120 XXXXKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGID 179 + L + Q AAT W+H + +T +QV GLAG+ ++ED+ L +P +G+D Sbjct: 121 SPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVD 180 Query: 180 DVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAIYPQHAAPRGWLRLRLLNGC 239 D PVI+QDK+ G +Y + G+ GDTLL NG P RGW+RLRLLN Sbjct: 181 DFPVIIQDKRLDNFGTPEYN---EPGSGGFVGDTLLVNGVQSPYVEVSRGWVRLRLLNAS 237 Query: 240 NARSLNFATSDNRPLYVIASDGGLLPEPVKVNELPVLMGERFEVLVEVNDNKPFDLVTLP 299 N+R +D RPL+VI+ D G LP PV V +L + GER E+LV++++ + Sbjct: 238 NSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILVDMSNGDEVSITCGE 297 Query: 300 VSQMGMAIAPFDKPHPVM-RIQPIAISASGALPDTLSSLP--ALPS--LEGLTVRKLQLS 354 + + I F +P ++ + + +G LP SLP LP+ + G +R +S Sbjct: 298 AASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTDSLPMRLLPTEIMAGSPIRSRDIS 357 Query: 355 XXXXXXXXXXXXXXEKYGDQAMVGMDHSQXXXXXXXXXXXXXXXXXKFDFHHANKINGQA 414 GD INGQ Sbjct: 358 ----------------LGDDP---------------------------------GINGQL 368 Query: 415 FDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVK 474 +D+N+ A +G +ERW + FHI G F+I + NG P GWKDTV Sbjct: 369 WDVNRIDVTAQQGTWERWTVRADEP---QAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVW 425 Query: 475 VEGNVSEVLVKFNHDAPKERAYMAHCHLLEHEDTG 509 V+G V E+LV F + + + LE D G Sbjct: 426 VDGQV-ELLVYFGQPSWAHFPFYFNSQTLEMADRG 459 Query= Z0134 glucose dehydrogenase (gcd) {Escherichia coli O157:H7 EDL933} (796 letters) Score E Sequences producing significant alignments: (bits) Value b0124 glucose dehydrogenase (gcd) [1.1.99.17] {Escherichia coli ... 1534 0.0 >b0124 glucose dehydrogenase (gcd) [1.1.99.17] {Escherichia coli K12-MG1655} Length = 796 Score = 1534 bits (3972), Expect = 0.0 Identities = 745/796 (93%), Positives = 745/796 (93%) Query: 1 MAINNTGSRRXXXXXXXXXXXXCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS 60 MAINNTGSRR CGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS Sbjct: 1 MAINNTGSRRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYPIAGLVMLGVAWMLWRS 60 Query: 61 KRXXXXXXXXXXXGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGX 120 KR GTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASG Sbjct: 61 KRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGIWLILPFVWRRLVIPASGA 120 Query: 121 XXXXXXXXXISGSILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF 180 ISG ILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF Sbjct: 121 VAALVVALLISGGILTWAGFNDPQEINGTLSADATPAEAISPVADQDWPAYGRNQEGQRF 180 Query: 181 SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD 240 SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD Sbjct: 181 SPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEVTPIKVGDTLYLCTAHQRLFALD 240 Query: 241 AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI 300 AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI Sbjct: 241 AASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAETASPEVMADCPRRIILPVNDGRLI 300 Query: 301 AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE 360 AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE Sbjct: 301 AINAENGKLCETFANKGVLNLQSNMPDTKPGLYEPTSPPIITDKTIVMAGSVTDNFSTRE 360 Query: 361 TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM 420 TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM Sbjct: 361 TSGVIRGFDVNTGELLWAFDPGAKDPNAIPSDEHTFTFNSPNSWAPAAYDAKLDLVYLPM 420 Query: 421 GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV 480 GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV Sbjct: 421 GVTTPDIWGGNRTPEQERYASSILALNATTGKLAWSYQTVHHDLWDMDLPAQPTLADITV 480 Query: 481 NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT 540 NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT Sbjct: 481 NGQKVPVIYAPAKTGNIFVLDRRNGELVVPAPEKPVPQGAAKGDYVTPTQPFSELSFRPT 540 Query: 541 KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN 600 KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN Sbjct: 541 KDLSGADMWGATMFDQLVCRVMFHQMRYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPN 600 Query: 601 REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF 660 REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF Sbjct: 601 REVAIANPMALPFVSKLIPRGPGNPMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPF 660 Query: 661 GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSXXXXXXXXXXXXXXXXXLGGPISTAG 720 GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDS LGGPISTAG Sbjct: 661 GLPCKQPAWGYISALDLKTNEVVWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAG 720 Query: 721 NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT 780 NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT Sbjct: 721 NVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGT 780 Query: 781 KMGDYIVAYALPDDVK 796 KMGDYIVAYALPDDVK Sbjct: 781 KMGDYIVAYALPDDVK 796 Query= Z0136 hypoxanthine phosphoribosyltransferase (hpt) {Escherichia coli O157:H7 EDL933} (182 letters) Score E Sequences producing significant alignments: (bits) Value b0125 hypoxanthine phosphoribosyltransferase (hpt) [2.4.2.8] {Es... 357 e-100 b0238 guanine-hypoxanthine phosphoribosyltransferase (gpt) [2.4.... 44 5e-006 >b0125 hypoxanthine phosphoribosyltransferase (hpt) [2.4.2.8] {Escherichia coli K12-MG1655} Length = 182 Score = 357 bits (915), Expect = e-100 Identities = 182/182 (100%), Positives = 182/182 (100%) Query: 1 MVRDMKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREV 60 MVRDMKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREV Sbjct: 1 MVRDMKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREV 60 Query: 61 QVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILS 120 QVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILS Sbjct: 61 QVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILS 120 Query: 121 LREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILL 180 LREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILL Sbjct: 121 LREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVILL 180 Query: 181 DE 182 DE Sbjct: 181 DE 182 >b0238 guanine-hypoxanthine phosphoribosyltransferase (gpt) [2.4.2.22] {Escherichia coli K12-MG1655} Length = 152 Score = 44.3 bits (103), Expect = 5e-006 Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 10/113 (8%) Query: 27 RQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKI 86 R++ R S ++ + RG + A L RE+ + H VD + SSY R++K+ Sbjct: 17 RKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRH-VDTVCISSYDH--DNQRELKV 73 Query: 87 LKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRR 139 LK + D G+ ++++D++D+G T +RE+ PK+ + T+ KP+ R Sbjct: 74 LKRAEGD--GEGFIVIDDLVDTGGTAVAIREMY----PKAHFV-TIFAKPAGR 119 Query= Z0137 putative carbonic anhdrase (EC 4.2.1.1) (yadF) {Escherichia coli O157:H7 EDL933} (220 letters) Score E Sequences producing significant alignments: (bits) Value b0126 putative carbonic anhdrase (EC 4.2.1.1) (yadF) {Escherichi... 421 e-119 b0339 carbonic anhydrase (cynT) [4.2.1.1] {Escherichia coli K12-... 62 2e-011 >b0126 putative carbonic anhdrase (EC 4.2.1.1) (yadF) {Escherichia coli K12-MG1655} Length = 220 Score = 421 bits (1083), Expect = e-119 Identities = 207/220 (94%), Positives = 207/220 (94%) Query: 1 MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEL 60 MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEL Sbjct: 1 MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGEL 60 Query: 61 FVHRNVANLVIHTDLNCLSVVQYAVDVLEVEXXXXXXXXXXXXVQAAVENPELGLINNWL 120 FVHRNVANLVIHTDLNCLSVVQYAVDVLEVE VQAAVENPELGLINNWL Sbjct: 61 FVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPELGLINNWL 120 Query: 121 LHIRDIWFKHSSLLDEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA 180 LHIRDIWFKHSSLL EMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA Sbjct: 121 LHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWA 180 Query: 181 YGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK 220 YGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK Sbjct: 181 YGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHANHK 220 >b0339 carbonic anhydrase (cynT) [4.2.1.1] {Escherichia coli K12-MG1655} Length = 219 Score = 62.4 bits (150), Expect = 2e-011 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 10/174 (5%) Query: 26 FEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSV---VQ 82 F++LA Q PR L+I CSDSR+ E +T EPG+LFV RN N+V V V+ Sbjct: 23 FKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYGPEPGGVSASVE 82 Query: 83 YAVDVLEVEXXXXXXXXXXXXVQAAVE---NPELGLINNWLLHIRDIWFKHSSL-LDEMP 138 YAV L V + A + +++WL + + + ++P Sbjct: 83 YAVAALRVSDIVICGHSNCGAMTAIASCQCMDHMPAVSHWLRYADSARVVNEARPHSDLP 142 Query: 139 QERRLDTLCELNVMEQVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLD 192 + + NV+ Q+ NL ++ A + G ++ +HGW Y I G + D Sbjct: 143 S--KAAAMVRENVIAQLANLQTHPSVRLALEEG-RIALHGWVYDIESGSIAAFD 193 Query= Z0138 putative ATP-binding component of a transport system (yadG) {Escherichia coli O157:H7 EDL933} (308 letters) Score E Sequences producing significant alignments: (bits) Value b0127 putative ATP-binding component of a transport system (yadG... 599 e-173 b0794 putative ATP-binding component of a transport system (ybhF... 137 9e-034 b0879 putative ATP-binding component of a transport system (ybjZ... 127 9e-031 b0199 ATP-binding component of a transporter (abc) {Escherichia ... 126 2e-030 b1917 putative ATP-binding component of a transport system (yecC... 116 2e-027 b1441 putative ATP-binding component of a transport system {Esch... 115 4e-027 b0864 ATP-binding component of 3rd arginine transport system (ar... 115 4e-027 b3271 putative ATP-binding component of a transport system (yhdZ... 114 8e-027 b0809 ATP-binding component of glutamine high-affinity transport... 114 1e-026 b3486 putative ATP-binding component of a transport system, frag... 108 3e-025 b3201 putative ATP-binding component of a transport system (yhbG... 101 7e-023 b0855 ATP-binding component of putrescine transport system (potG... 101 7e-023 b2422 ATP-binding component of sulfate permease A protein; chrom... 100 1e-022 b0366 taurine ATP-binding component of a transport system (tauB)... 100 1e-022 b0652 ATP-binding protein of glutamate/aspartate transport syste... 99 5e-022 b4106 ATP-binding component of phosphonate transport (phnC) {Esc... 98 6e-022 b2306 ATP-binding component of histidine transport (hisP) {Esche... 98 6e-022 b2129 putative ATP-binding component of a transport system (yehX... 98 6e-022 b3749 ATP-binding component of D-ribose high-affinity transport ... 97 1e-021 b1126 ATP-binding component of spermidine/putrescine transport (... 97 1e-021 b0262 putative ATP-binding component of a transport system (afuC... 96 3e-021 b3463 ATP-binding component of a membrane-associated complex inv... 96 4e-021 b3480 ATP-binding protein of nickel transport system (nikE) {Esc... 93 2e-020 b0914 ATP-binding transport protein; multicopy suppressor of htr... 93 2e-020 b4228 putative ATP-binding component of a transport system (ytfR... 93 3e-020 b0495 putative ATP-binding component of a transport system (ybbA... 92 4e-020 b0886 ATP-binding component of cytochrome-related transport (cyd... 92 6e-020 b3450 ATP-binding component of sn-glycerol 3-phosphate transport... 91 7e-020 b4035 ATP-binding component of transport system for maltose (mal... 91 1e-019 b3454 ATP-binding component of leucine transport (livF) {Escheri... 91 1e-019 b2677 ATP-binding component of transport system for glycine, bet... 91 1e-019 b1484 putative ATP-binding component of a transport system {Esch... 90 2e-019 b2149 ATP-binding component of methyl-galactoside transport and ... 88 6e-019 b1117 putative ATP-binding component of a transport system (ycfV... 88 6e-019 b4087 putative ATP-binding component of a transport system (yjcW... 87 1e-018 b0933 putative ATP-binding component of a transport system (ycbE... 87 2e-018 b1513 putative ATP-binding component of a transport system {Esch... 86 3e-018 b1318 putative ATP-binding component of a transport system (ycjV... 86 3e-018 b2547 putative ATP-binding component of a transport system (yphE... 82 3e-017 b1900 ATP-binding component of high-affinity L-arabinose transpo... 82 5e-017 b1858 putative ATP-binding component of a transport system (yebM... 82 5e-017 b2180 putative ATP-binding component of a transport system (yejF... 82 6e-017 b3540 putative ATP-binding component of dipeptide transport syst... 81 8e-017 b0588 ATP-binding component of ferric enterobactin transport (fe... 81 1e-016 b4287 ATP-binding component of citrate-dependent iron(III) trans... 79 5e-016 b3567 putative ATP-binding protein of xylose transport system (x... 78 7e-016 b0066 putative ATP-binding component of a transport system (yabJ... 78 9e-016 b1246 homolog of Salmonella ATP-binding protein of oligopeptide ... 77 1e-015 b1247 homolog of Salmonella ATP-binding protein of oligopeptide ... 77 2e-015 b3455 ATP-binding component of high-affinity branched-chain amin... 76 2e-015 b3725 ATP-binding component of high-affinity phosphate-specific ... 75 4e-015 b1483 putative ATP-binding component of a transport system {Esch... 75 4e-015 b0829 putative ATP-binding component of a transport system {Esch... 75 6e-015 b1290 putative ATP-binding protein of peptide transport system (... 74 2e-014 b0765 ATP-binding component of molybdate transport (modC) {Esche... 74 2e-014 b4097 ATP-binding component of phosphonate transport (phnK) {Esc... 72 4e-014 b3541 putative ATP-binding component of dipeptide transport syst... 71 8e-014 b1756 putative ATP-binding component of a transport system {Esch... 70 2e-013 b0760 ATP-binding component of molybdate transport system (modF)... 69 5e-013 b0949 putative ATP-binding component of a transport system (uup)... 68 7e-013 b0820 putative ATP-binding component of a transport system (ybiT... 67 2e-012 b0151 ATP-binding component of hydroxymate-dependent iron transp... 67 2e-012 b3479 ATP-binding protein of nickel transport system (nikD) {Esc... 65 4e-012 b1682 putative ATP-binding component of a transport system (ynhD... 64 1e-011 b0449 putative ATP-binding component of a transport system (mdlB... 63 2e-011 b0448 ATP-binding component of a transport system (mdlA) {Escher... 62 6e-011 b3195 putative ATP-binding component of a transport system (yrbF... 61 8e-011 b3352 putative ATP-binding component of a transport system (yheS... 59 5e-010 b0490 putative ATP-binding component of a transport system (ybbL... 58 7e-010 b4391 putative ATP-binding component of a transport system (yjjK... 58 9e-010 b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia... 58 9e-010 b1291 putative ATP-binding protein of peptide transport system (... 58 9e-010 b2211 putative ATP-binding component of a transport system (yojI... 57 2e-009 b4096 ATP-binding component of phosphonate transport (phnL) {Esc... 57 2e-009 >b0127 putative ATP-binding component of a transport system (yadG) {Escherichia coli K12-MG1655} Length = 308 Score = 599 bits (1544), Expect = e-173 Identities = 307/308 (99%), Positives = 307/308 (99%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 MTIALELQQLKK YPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG Sbjct: 1 MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 Query: 61 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY Sbjct: 61 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK Sbjct: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKS 240 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKS Sbjct: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKS 240 Query: 241 PLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLV 300 PLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLV Sbjct: 241 PLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVSLV 300 Query: 301 NEKQGDRA 308 NEKQGDRA Sbjct: 301 NEKQGDRA 308 >b0794 putative ATP-binding component of a transport system (ybhF) {Escherichia coli K12-MG1655} Length = 583 Score = 137 bits (345), Expect = 9e-034 Identities = 80/225 (35%), Positives = 134/225 (59%), Gaps = 8/225 (3%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 +E ++L K + G A ++ V+ G+ + LLGPNGAGKSTT ++ L+ TSG+ V Sbjct: 335 IEAKELTKKF-GDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALV 393 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G DL++ A++ LG + Q+F+ TV+Q + +G YG+ + ++EK + Sbjct: 394 LGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRA---QNEKISRMS 450 Query: 125 DLWGKRNERARM---LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKD 181 + +G ++ + L G K+RL +A +LMHEP +L LDEPT+GVD RR W + Sbjct: 451 EAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINS 510 Query: 182 LNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAK 226 + +KG T+++TTH+++EAE C IG++ G+L+ + + L A+ Sbjct: 511 MVEKGVTVMVTTHFMDEAE-YCDRIGLVYRGKLIASGTPDDLKAQ 554 Score = 122 bits (306), Expect = 3e-029 Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 8/234 (3%) Query: 5 LELQQLKKNYPG-GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63 + L L+K +PG A+ +D + AG L+GP+GAGK+T + +++ L+ SG + Sbjct: 11 ITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDSGSAT 70 Query: 64 VFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQ---IVVNQAGYYGVERKEAYIRSEKY 120 V G+D K+ LG +PQ+F TV + + + G RK+ + R ++ Sbjct: 71 VIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFARLLEF 130 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 G+ A LSGGMK++L +A L+ EPK+L+LDEP GVD RR +W + Sbjct: 131 TSLGPFTGRL---AGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMVH 187 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFIL 234 +L +G I+ +T YL+EAE CR++ ++ GEL+ KAL + +F++ Sbjct: 188 ELAGEGMLILWSTSYLDEAEQ-CRDVLLMNEGELLYQGEPKALTQTMAGRSFLM 240 >b0879 putative ATP-binding component of a transport system (ybjZ) {Escherichia coli K12-MG1655} Length = 648 Score = 127 bits (319), Expect = 9e-031 Identities = 80/225 (35%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 1 MTIALELQQLKKNYPGG---VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNK 57 MT LEL+ ++++YP G V+ L+GI L + AG+ A++G +G+GKST + I+ L Sbjct: 1 MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKA 60 Query: 58 TSGRVSVFGYDLEKDVVNAKRQL-----GLVPQEFNFNPFETVQQIVVNQAGYYGVERKE 112 TSG V G D+ +A QL G + Q ++ T +Q V A Y G+ERK+ Sbjct: 61 TSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQ 120 Query: 113 AYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELR 172 +R+++ L++L L + LSGG ++R+ IARALM+ ++++ DEPT +D Sbjct: 121 RLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 Query: 173 RSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVEN 217 + L L D+G T+I+ TH + A R I I+ GE+V N Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIE-IRDGEIVRN 224 >b0199 ATP-binding component of a transporter (abc) {Escherichia coli K12-MG1655} Length = 343 Score = 126 bits (316), Expect = 2e-030 Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 5 LELQQLKKNYPGG---VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGR 61 ++L + K + G +QAL + L V AG Y ++G +GAGKST I ++ L T G Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61 Query: 62 VSVFGYDL----EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRS 117 V V G +L E ++ A+RQ+G++ Q FN TV V + E R Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121 Query: 118 EKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 + L + L K + LSGG K+R+ IARAL PK+L+ DE T+ +D RS+ Sbjct: 122 TELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILE 181 Query: 178 FLKDLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKS 229 LKD+N + G TI+L TH ++ + +C + +I +GEL+E ++ + + K+ Sbjct: 182 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 234 >b1917 putative ATP-binding component of a transport system (yecC) {Escherichia coli K12-MG1655} Length = 250 Score = 116 bits (290), Expect = 2e-027 Identities = 74/232 (31%), Positives = 125/232 (53%), Gaps = 11/232 (4%) Query: 4 ALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63 A+E++ L K + G L GIDL+V+ G+ A++GP+G+GK+T + I+ L +G ++ Sbjct: 3 AIEVKNLVKKFHGQT-VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTIT 61 Query: 64 VFGYDLE--------KDVVNAKRQ-LGLVPQEFNFNPFETV-QQIVVNQAGYYGVERKEA 113 V ++ K ++ RQ +G V Q FN P TV + I+ G ++EA Sbjct: 62 VGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA 121 Query: 114 YIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRR 173 R+ + L ++ L GK R LSGG ++R+ IARAL P++++ DEPT+ +D EL Sbjct: 122 TARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVG 181 Query: 174 SMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 + ++ L + T+++ TH + A + + G +VE + KAL A Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGAAKALFA 233 >b1441 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 337 Score = 115 bits (288), Expect = 4e-027 Identities = 67/224 (29%), Positives = 125/224 (55%), Gaps = 3/224 (1%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 MT A+E + + Y G V+A+ G+ + ++ G+F+++LGP+G+GK+T + +I+ + G Sbjct: 1 MTYAVEFDNVSRLY-GDVRAVDGVSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGG 59 Query: 61 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120 +S+FG ++ +R + V Q++ P ++ V GV +K+ + +++ Sbjct: 60 AISIFGKPAS-NLPPWERDVNTVFQDYALFPHMSILDNVAYGLMVKGVNKKQRHAMAQEA 118 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L+++ L + LSGG ++R+ IARAL++EP++L+LDEP +D++LR M LK Sbjct: 119 LEKVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELK 178 Query: 181 DLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKAL 223 L G T I TH EA + + + +G + + S + L Sbjct: 179 KLQQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIEQVDSPRDL 222 >b0864 ATP-binding component of 3rd arginine transport system (artP) {Escherichia coli K12-MG1655} Length = 242 Score = 115 bits (288), Expect = 4e-027 Identities = 70/209 (33%), Positives = 119/209 (56%), Gaps = 8/209 (3%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFG--YDL---- 69 G QAL I L G+ LLGP+GAGKS+ + +++ L SG +++ G +D Sbjct: 13 GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTP 72 Query: 70 -EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ-AGYYGVERKEAYIRSEKYLKQLDLW 127 +K + + +R +G+V Q++N P TVQQ ++ G+ + +A R+EK L++L L Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK 132 Query: 128 GKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGT 187 + LSGG ++R+ IARALM EP++L+ DEPTA +D E+ + +++L + Sbjct: 133 PYSDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETNI 192 Query: 188 TIILTTHYLEEAEMLCRNIGIIQHGELVE 216 T ++ TH +E A + +++G +VE Sbjct: 193 TQVIVTHEVEVARKTASRVVYMENGHIVE 221 >b3271 putative ATP-binding component of a transport system (yhdZ) {Escherichia coli K12-MG1655} Length = 252 Score = 114 bits (285), Expect = 8e-027 Identities = 73/230 (31%), Positives = 124/230 (53%), Gaps = 5/230 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 + L+ + K Y G L+ I+L V+ G+ L GP+G+GKSTTI I+ L GR+ V Sbjct: 13 ITLENVNKWY-GQFHVLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVV 71 Query: 65 FGYDLEKDVVNAKR---QLGLVPQEFNFNPFETV-QQIVVNQAGYYGVERKEAYIRSEKY 120 G +L +D+ N +R ++G+V Q FN P TV Q + + +KEA + Y Sbjct: 72 DGIELNEDIRNIERVRQEVGMVFQHFNLFPHLTVLQNCTLAPIWVRKMPKKEAEDLAVHY 131 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L+++ + ++ +SGG ++R+ IAR+L +PK+++ DEPT+ +D E+ + + + Sbjct: 132 LERVRIAEHAHKFPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMI 191 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSE 230 L G T++ TH + A + + + GE+VE + A KSE Sbjct: 192 GLAQSGMTMLCVTHEMGFARTVADRVIFMDRGEIVEQAAPDEFFAHPKSE 241 >b0809 ATP-binding component of glutamine high-affinity transport system (glnQ) {Escherichia coli K12-MG1655} Length = 240 Score = 114 bits (284), Expect = 1e-026 Identities = 68/230 (29%), Positives = 127/230 (55%), Gaps = 5/230 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 +E + + K++ G Q L IDL + G+ ++GP+G+GKST + I+ L TSG + V Sbjct: 2 IEFKNVSKHF-GPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 Query: 65 FGYDLEKDVVNAK---RQLGLVPQEFNFNPFET-VQQIVVNQAGYYGVERKEAYIRSEKY 120 G + V+ + ++ G+V Q+F P T ++ ++ G ++EA + + Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGANKEEAEKLAREL 120 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L ++ L + + LSGG ++R+ IARAL +PK+++ DEPT+ +D ELR + ++ Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ 180 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSE 230 DL ++G T+++ TH + AE + + I G + E+ + + L+ S+ Sbjct: 181 DLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIKNPPSQ 230 >b3486 putative ATP-binding component of a transport system, fragment 1 (yhiH) {Escherichia coli K12-MG1655} Length = 894 Score = 108 bits (271), Expect = 3e-025 Identities = 67/226 (29%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 3 IALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRV 62 IA+E + L + G A+ ++ ++ G+ + LG NG GKSTT+ +++ L+ + G Sbjct: 258 IAIEARDLTMRF-GSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEA 316 Query: 63 SVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLK 122 +FG ++ ++ +R++G + Q F+ TV+Q + A + + E R + + Sbjct: 317 WLFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMSE 376 Query: 123 QLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL 182 + L + L G+++RL +A A++H P++LILDEPT+GVD R W + DL Sbjct: 377 RFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDL 436 Query: 183 N--DKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAK 226 + DK TI ++TH++ EAE C I ++ G+++ + + + L+ K Sbjct: 437 SRQDK-VTIFISTHFMNEAER-CDRISLMHAGKVLASGTPQELVEK 480 Score = 97.8 bits (242), Expect = 8e-022 Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 10/234 (4%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLE--KDV 73 G AL I L + A L+GP+G GKS+ + +IS G V V G D+ K Sbjct: 6 GKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVMVLGGDMRDPKHR 65 Query: 74 VNAKRQLGLVPQEFNFNPFET--VQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRN 131 + ++ +PQ N + T V + V A +G ++ E +R + L L R+ Sbjct: 66 RDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRD 125 Query: 132 ERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK--GTTI 189 A LSGGMK++L + AL+H+P+LLILDEPT GVD R W + + + ++ Sbjct: 126 RPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRSQFWDLIDSIRQRQSNMSV 185 Query: 190 ILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETF---ILDLAPKS 240 ++ T Y+EEAE + + GE++ S + L + +S T ++L P++ Sbjct: 186 LVATAYMEEAERFDWLVA-MNAGEVLATGSAEELRQQTQSATLEEAFINLLPQA 238 >b3201 putative ATP-binding component of a transport system (yhbG) {Escherichia coli K12-MG1655} Length = 241 Score = 101 bits (251), Expect = 7e-023 Identities = 65/230 (28%), Positives = 123/230 (53%), Gaps = 18/230 (7%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L + L K Y G + + + L V +G+ LLGPNGAGK+TT ++ +V + +G + + Sbjct: 4 LTAKNLAKAYKGR-RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 Query: 65 FGYDLEKDVVNAK--RQLGLVPQEFNF----NPFETVQQIVVNQAGYYGVERKEAYIRSE 118 D+ ++A+ R +G +PQE + + ++ + ++ + +R++ R+ Sbjct: 63 DDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED---RAN 119 Query: 119 KYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVD----IELRRS 174 + +++ + R+ + LSGG +RR+ IARAL PK ++LDEP AGVD I+++R Sbjct: 120 ELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR- 178 Query: 175 MWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALL 224 ++ L D G +++T H + E +C I+ G L+ + + +L Sbjct: 179 ---IIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225 >b0855 ATP-binding component of putrescine transport system (potG) {Escherichia coli K12-MG1655} Length = 404 Score = 101 bits (251), Expect = 7e-023 Identities = 65/217 (29%), Positives = 115/217 (52%), Gaps = 3/217 (1%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 +T LE++ L K+Y G A+ + L + G+ +ALLG +G GKST + +++ ++G Sbjct: 43 LTPLLEIRNLTKSYDGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAG 101 Query: 61 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120 ++ + G DL + V R + ++ Q + P TV+Q + + + E R + Sbjct: 102 QIMLDGVDLSQ-VPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEM 160 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L + + + LSGG ++R+ +AR+L PKLL+LDEP +D +LR M + Sbjct: 161 LGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVV 220 Query: 181 DLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 D+ ++ G T ++ TH EEA + I I+ G+ V+ Sbjct: 221 DILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 257 >b2422 ATP-binding component of sulfate permease A protein; chromate resistance (cysA) {Escherichia coli K12-MG1655} Length = 365 Score = 100 bits (249), Expect = 1e-022 Identities = 69/220 (31%), Positives = 125/220 (56%), Gaps = 13/220 (5%) Query: 3 IALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRV 62 +++E+ +KK++ G Q L I L + +G ALLGP+G+GK+T + II+ L ++TSG + Sbjct: 1 MSIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59 Query: 63 SVFGYDLEKDVVNAK-RQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKE----AYIRS 117 G D+ + ++A+ R++G V Q + TV + G + R+E A I++ Sbjct: 60 RFHGTDVSR--LHARDRKVGFVFQHYALFRHMTVFDNIA--FGLTVLPRRERPNAAAIKA 115 Query: 118 E--KYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSM 175 + K L+ + L + LSGG K+R+ +ARAL EP++L+LDEP +D ++R+ + Sbjct: 116 KVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKEL 175 Query: 176 WGFLKDLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGEL 214 +L+ L+++ T + TH EEA + + ++ G + Sbjct: 176 RRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNI 215 >b0366 taurine ATP-binding component of a transport system (tauB) {Escherichia coli K12-MG1655} Length = 255 Score = 100 bits (249), Expect = 1e-022 Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 6/209 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L++ L +Y GG AL I+L +E+G+ +LGP+G GK+T + +I+ V G + + Sbjct: 2 LQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQL 60 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G K + + G+V Q P+ VQ V G+E+ + + + LK++ Sbjct: 61 AG----KRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEKMQRLEIAHQMLKKV 116 Query: 125 DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-N 183 L G LSGG ++R+ IARAL P+LL+LDEP +D R M L L Sbjct: 117 GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQ 176 Query: 184 DKGTTIILTTHYLEEAEMLCRNIGIIQHG 212 + G ++L TH +EEA + + ++ G Sbjct: 177 ETGKQVLLITHDIEEAVFMATELVLLSSG 205 >b0652 ATP-binding protein of glutamate/aspartate transport system (gltL) {Escherichia coli K12-MG1655} Length = 241 Score = 98.6 bits (244), Expect = 5e-022 Identities = 62/230 (26%), Positives = 119/230 (51%), Gaps = 5/230 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 + L+ + K Y G Q L +V+ G+ + GP+G+GKST I ++ L G ++V Sbjct: 2 ITLKNVSKWY-GHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITV 60 Query: 65 FGY---DLEKDVVNAKRQLGLVPQEFNFNP-FETVQQIVVNQAGYYGVERKEAYIRSEKY 120 G D + D+ + ++G+V Q F P ++ + + Q ++ A ++ K Sbjct: 61 DGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVKVLKRDKAPAREKALKL 120 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L+++ L N+ LSGG ++R+ IARAL +P ++ DEPT+ +D E+ + + Sbjct: 121 LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSE 230 +L ++G T+++ TH + A + + + G++VE++ A KS+ Sbjct: 181 ELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDSPKDAFFDDPKSD 230 >b4106 ATP-binding component of phosphonate transport (phnC) {Escherichia coli K12-MG1655} Length = 262 Score = 98.2 bits (243), Expect = 6e-022 Identities = 64/235 (27%), Positives = 123/235 (52%), Gaps = 25/235 (10%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVN---K 57 M + +++L K + QAL +DL + G+ ALLGP+G+GKST + +S L+ Sbjct: 1 MQTIIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKS 59 Query: 58 TSGRVSVFGYDLEK------DVVNAKRQLGLVPQEFNF-NPFETVQQIVVNQAG------ 104 + + G +++ D+ ++ G + Q+FN N ++ +++ G Sbjct: 60 VGSHIELLGRTVQREGRLARDIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR 119 Query: 105 ----YYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL 160 ++ E+K+ R+ + L ++ + ++R LSGG ++R+ IARALM + K+++ Sbjct: 120 TCFSWFTGEQKQ---RALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILA 176 Query: 161 DEPTAGVDIELRRSMWGFLKDLN-DKGTTIILTTHYLEEAEMLCRNIGIIQHGEL 214 DEP A +D E R + L+D+N + G T+++T H ++ A C I ++ G + Sbjct: 177 DEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 >b2306 ATP-binding component of histidine transport (hisP) {Escherichia coli K12-MG1655} Length = 257 Score = 98.2 bits (243), Expect = 6e-022 Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 25/245 (10%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L + L K Y G + L+G+ LQ AGD +++G +G+GKST + I+ L + G + V Sbjct: 6 LNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVV 64 Query: 65 FGYDL----EKD---VVNAKRQLGL-------VPQEFNFNPFETVQQIVVNQA-GYYGVE 109 G + +KD V K QL L V Q FN TV + V+ G+ Sbjct: 65 NGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 124 Query: 110 RKEAYIRSEKYLKQLDLWGKRNERAR-----MLSGGMKRRLMIARALMHEPKLLILDEPT 164 ++EA R+ KYL ++ + +ERA+ LSGG ++R+ IARAL EP++L+ DEPT Sbjct: 125 KQEARERAVKYLAKVGI----DERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPT 180 Query: 165 AGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALL 224 + +D EL + ++ L ++G T+++ TH + A + ++ + G++ E + + L Sbjct: 181 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQLF 240 Query: 225 AKLKS 229 +S Sbjct: 241 GNPQS 245 >b2129 putative ATP-binding component of a transport system (yehX) {Escherichia coli K12-MG1655} Length = 308 Score = 98.2 bits (243), Expect = 6e-022 Identities = 64/225 (28%), Positives = 117/225 (52%), Gaps = 4/225 (1%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 +E + K + G +A+ ++L + G F L+G +G+GKSTT+ +I+ LV SG + Sbjct: 2 IEFSHVSKLF-GAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGEIRF 60 Query: 65 FGYDLEK-DVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQ 123 G ++ V+ +R++G Q P +V Q + R R ++ + Sbjct: 61 AGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQLQKWSRARIDDRIDELMAL 120 Query: 124 LDLWGKRNER-ARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL 182 L L ER LSGG ++R+ +ARAL +P++L++DEP +D R ++ + + Sbjct: 121 LGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRI 180 Query: 183 ND-KGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAK 226 + G TI+L TH ++EA L ++ ++ HGE+V+ + +L + Sbjct: 181 HRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGNPLTMLTR 225 >b3749 ATP-binding component of D-ribose high-affinity transport system (rbsA) {Escherichia coli K12-MG1655} Length = 501 Score = 97.1 bits (240), Expect = 1e-021 Identities = 81/305 (26%), Positives = 152/305 (49%), Gaps = 24/305 (7%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 M L+L+ + K +PG V+AL G L V G AL+G NGAGKST + +++ + + +G Sbjct: 1 MEALLQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG 59 Query: 61 RVSVFGYDLEKDVVNAKRQ--LGLVPQEFNFNPFETVQQIV------VNQAGYYGVERKE 112 + G + + ++ +G++ QE N P T+ + + VN+ G ++ K Sbjct: 60 TLLWLGKETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGK--IDWKT 117 Query: 113 AYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELR 172 Y ++K L +L+L K ++ LS G ++ + IA+ L E K++I+DEPT + Sbjct: 118 MYAEADKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTET 177 Query: 173 RSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETF 232 S++ +++L +G I+ +H ++E +C ++ + + G+ + + +L +E Sbjct: 178 ESLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQFIAEREVASL-----TEDS 232 Query: 233 ILDLAPKSPLPKLDGYQYRLVDTA----TLEVEVLREQGINSVFTQLSEQGIQVLSMRNK 288 ++++ L QY +D A L+V+ L G+N V L + I +S Sbjct: 233 LIEMMVGRKLED----QYPHLDKAPGDIRLKVDNLCGPGVNDVSFTLRKGEILGVSGLMG 288 Query: 289 ANRLE 293 A R E Sbjct: 289 AGRTE 293 Score = 61.2 bits (147), Expect = 8e-011 Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 18/206 (8%) Query: 24 IDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDL-----EKDVVNA-- 76 + + G+ + G GAG++ + ++ + +TSG V++ G+++ + + N Sbjct: 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 Query: 77 -----KRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRS--EKYLKQLDLWGK 129 +++ GLV + E + + G K A + +++ ++ Sbjct: 331 YISEDRKRDGLV---LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTP 387 Query: 130 RNERA-RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTT 188 E+A +LSGG ++++ IAR LM PK+LILDEPT GVD+ ++ ++ + G + Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLS 447 Query: 189 IILTTHYLEEAEMLCRNIGIIQHGEL 214 IIL + + E + I ++ G L Sbjct: 448 IILVSSEMPEVLGMSDRIIVMHEGHL 473 >b1126 ATP-binding component of spermidine/putrescine transport (potA) {Escherichia coli K12-MG1655} Length = 378 Score = 97.1 bits (240), Expect = 1e-021 Identities = 64/214 (29%), Positives = 110/214 (51%), Gaps = 2/214 (0%) Query: 17 GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 G + + +DL + G+F LLGP+G GK+T + +I+ L SGR+ + D+ V Sbjct: 29 GKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITH-VPAE 87 Query: 77 KRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARM 136 R + V Q + P TV + V E R + L+ + L + Sbjct: 88 NRYVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQ 147 Query: 137 LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTIILTTHY 195 LSGG ++R+ IARA++++P+LL+LDE + +D +LR+ M LK L K G T + TH Sbjct: 148 LSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD 207 Query: 196 LEEAEMLCRNIGIIQHGELVENTSMKALLAKLKS 229 EEA + I +++ G + ++ + + + + K+ Sbjct: 208 QEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 241 >b0262 putative ATP-binding component of a transport system (afuC) {Escherichia coli K12-MG1655} Length = 352 Score = 95.9 bits (237), Expect = 3e-021 Identities = 60/213 (28%), Positives = 113/213 (53%), Gaps = 3/213 (1%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 +EL+ + K + G + I+L + G LLGP+G GK+T + +++ L + G++ + Sbjct: 11 VELRNVTKRF-GSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFI 69 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G D+ + +R + +V Q + P ++ + V GV R E R ++ L + Sbjct: 70 DGEDVTHRSIQ-QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPRAELKARVKEALAMV 128 Query: 125 DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLND 184 DL G + +SGG ++R+ +ARAL+ +PK+L+ DEP + +D LRRSM +++L Sbjct: 129 DLEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIRELQK 188 Query: 185 K-GTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 + T + TH EA + + ++ G +++ Sbjct: 189 QFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQ 221 >b3463 ATP-binding component of a membrane-associated complex involved in cell division (ftsE) {Escherichia coli K12-MG1655} Length = 222 Score = 95.5 bits (236), Expect = 4e-021 Identities = 56/194 (28%), Positives = 101/194 (52%), Gaps = 4/194 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 + + + K Y GG QAL+G+ ++ G+ L G +GAGKST + +I + ++G++ Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 Query: 65 FGYDL----EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY 120 G+D+ ++V +RQ+G++ Q+ + TV V G + R Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA 121 Query: 121 LKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 L ++ L K LSGG ++R+ IARA++++P +L+ DEPT +D L + + Sbjct: 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181 Query: 181 DLNDKGTTIILTTH 194 + N G T+++ TH Sbjct: 182 EFNRVGVTVLMATH 195 >b3480 ATP-binding protein of nickel transport system (nikE) {Escherichia coli K12-MG1655} Length = 268 Score = 93.2 bits (230), Expect = 2e-020 Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 13/207 (6%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA---- 76 L + L +++G+ ALLG +G GKST ++ L + G +S G L K +N Sbjct: 28 LNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAK--LNRAQRK 85 Query: 77 --KRQLGLVPQEF--NFNPFETVQQIVVNQAGYY-GVERKEAYIRSEKYLKQLDLWGK-R 130 +R + +V Q+ NP +TV++I+ + +++ E R+ + LK +DL Sbjct: 86 AFRRDIQMVFQDSISAVNPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVL 145 Query: 131 NERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTI 189 ++R LSGG +R+ +ARAL EPKLLILDE + +D+ L+ + LK L + GT Sbjct: 146 DKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTAC 205 Query: 190 ILTTHYLEEAEMLCRNIGIIQHGELVE 216 + TH L E C+ + ++ +G++VE Sbjct: 206 LFITHDLRLVERFCQRVMVMDNGQIVE 232 >b0914 ATP-binding transport protein; multicopy suppressor of htrB (msbA) {Escherichia coli K12-MG1655} Length = 582 Score = 93.2 bits (230), Expect = 2e-020 Identities = 69/227 (30%), Positives = 117/227 (51%), Gaps = 9/227 (3%) Query: 5 LELQQLKKNYPG-GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63 +E + + YPG V ALR I+L++ AG AL+G +G+GKST +I+ + G + Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401 Query: 64 VFGYDL-EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIR---SEK 119 + G+DL E + + + Q+ LV Q + I + Y E+ E R + Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMD 461 Query: 120 YLKQLD--LWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 ++ ++D L E +LSGG ++R+ IARAL+ + +LILDE T+ +D E R++ Sbjct: 462 FINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQA 521 Query: 178 FLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALL 224 L +L T++++ H L E I +++ G +VE + LL Sbjct: 522 ALDELQKNRTSLVI-AHRLSTIEK-ADEIVVVEDGVIVERGTHNDLL 566 >b4228 putative ATP-binding component of a transport system (ytfR) {Escherichia coli K12-MG1655} Length = 417 Score = 92.8 bits (229), Expect = 3e-020 Identities = 64/216 (29%), Positives = 109/216 (50%), Gaps = 6/216 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L + L K +PG V+AL +D + G+ ALLG NGAGKST I ++ + + G + + Sbjct: 10 LRTEGLSKFFPG-VKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWL 68 Query: 65 FGYDLEKDVVNAKRQLGL--VPQEFNFNPFETVQQ--IVVNQAGYYGV-ERKEAYIRSEK 119 G + +QLG+ V QE N P +V + + +G+ RKE R+ + Sbjct: 69 EGQAISPKNTAHAQQLGIGTVYQEVNLLPNMSVADNLFIGREPKRFGLLRRKEMEKRATE 128 Query: 120 YLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL 179 + E S M++ + I RA+ K+LILDEPTA +D + ++ + Sbjct: 129 LMASYGFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLDTQEVELLFDLM 188 Query: 180 KDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELV 215 + L D+G ++I TH+L++ + I ++++G V Sbjct: 189 RQLRDRGVSLIFVTHFLDQVYQVSDRITVLRNGSFV 224 >b0495 putative ATP-binding component of a transport system (ybbA) {Escherichia coli K12-MG1655} Length = 228 Score = 92.0 bits (227), Expect = 4e-020 Identities = 71/221 (32%), Positives = 114/221 (51%), Gaps = 10/221 (4%) Query: 5 LELQQLKKNYPGG---VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGR 61 +E+ LKK+ G + L G++L V+ G+ AL+G +G+GKST + I++ L + +SG Sbjct: 7 VEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGESGSGKSTLLAILAGLDDGSSGE 66 Query: 62 VSVFGYDLEKDVVNAKRQL-----GLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIR 116 VS+ G L A+ +L G V Q F P + V A G E+ Sbjct: 67 VSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSAESRNG 126 Query: 117 SEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMW 176 ++ L+QL L + + LSGG ++R+ +ARA P +L DEPT +D + + Sbjct: 127 AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186 Query: 177 GFLKDLN-DKGTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 L LN + GTT+I+ TH L+ A R + ++ +G+L E Sbjct: 187 DLLFSLNREHGTTLIMVTHDLQLAARCDRCLRLV-NGQLQE 226 >b0886 ATP-binding component of cytochrome-related transport (cydC) {Escherichia coli K12-MG1655} Length = 573 Score = 91.7 bits (226), Expect = 6e-020 Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 6/228 (2%) Query: 3 IALELQQLKKNYPG-GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGR 61 ++L L+ ++ YP QAL+GI LQV AG+ A+LG G GKST + ++ + G Sbjct: 337 VSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGE 396 Query: 62 VSVFGYDLEKDVVNAKRQ-LGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRS--E 118 + + + A RQ + +VPQ + +++ G E R E Sbjct: 397 ILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLE 456 Query: 119 KYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGF 178 K L+ L E R LSGG RRL IARAL+H+ L++LDEPT G+D + Sbjct: 457 KLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILEL 516 Query: 179 LKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAK 226 L ++ + T+++ TH L + I ++ +G+++E + LLA+ Sbjct: 517 LAEMM-REKTVLMVTHRLRGLSRF-QQIIVMDNGQIIEQGTHAELLAR 562 >b3450 ATP-binding component of sn-glycerol 3-phosphate transport system (ugpC) {Escherichia coli K12-MG1655} Length = 369 Score = 91.3 bits (225), Expect = 7e-020 Identities = 57/209 (27%), Positives = 112/209 (53%), Gaps = 2/209 (0%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L+LQ + K++ G Q ++ + L V G+F ++GP+G GKST + +++ L T G + + Sbjct: 17 LKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGDIWI 76 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 + ++ R + +V Q + P +V++ + G+ +++ R ++ + L Sbjct: 77 NDQRVT-EMEPKDRGIAMVFQNYALYPHMSVEENMAWGLKIRGMGKQQIAERVKEAARIL 135 Query: 125 DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLND 184 +L G R R LSGG ++R+ + RA++ +P + + DEP + +D +LR M L+ L+ Sbjct: 136 ELDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHR 195 Query: 185 K-GTTIILTTHYLEEAEMLCRNIGIIQHG 212 + TT + TH EA L + + ++ G Sbjct: 196 RLKTTSLYVTHDQVEAMTLAQRVMVMNGG 224 >b4035 ATP-binding component of transport system for maltose (malK) {Escherichia coli K12-MG1655} Length = 371 Score = 90.9 bits (224), Expect = 1e-019 Identities = 80/297 (26%), Positives = 140/297 (47%), Gaps = 8/297 (2%) Query: 4 ALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63 +++LQ + K + G V + I+L + G+F +GP+G GKST + +I+ L TSG + Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61 Query: 64 VFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQ 123 + G D A+R +G+V Q + P +V + + G +++ R + + Sbjct: 62 I-GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120 Query: 124 LDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLN 183 L L + + + LSGG ++R+ I R L+ EP + +LDEP + +D LR M + L+ Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLH 180 Query: 184 DK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPL 242 + G T+I TH EA L I ++ G V L ++ F+ Sbjct: 181 KRLGRTMIYVTHDQVEAMTLADKIVVLDAGR-VAQVGKPLELYHYPADRFVAGFIGS--- 236 Query: 243 PKLDGYQYRLVDTATLEVEV-LREQGINSVFTQLSEQGIQVLSMRNKANRLEELFVS 298 PK++ ++ TA +V+V L V+ + + +QV + + R E L S Sbjct: 237 PKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLPS 293 >b3454 ATP-binding component of leucine transport (livF) {Escherichia coli K12-MG1655} Length = 241 Score = 90.9 bits (224), Expect = 1e-019 Identities = 66/231 (28%), Positives = 122/231 (52%), Gaps = 16/231 (6%) Query: 3 IALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRV 62 + L ++ +Y G +QAL + L + G+ L+G NGAGK+T +G + TSGR+ Sbjct: 8 VMLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 66 Query: 63 SVFGYDLEKDVVN------AKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIR 116 VF +KD+ + + + +VP+ TV++ + G++ ++ + Sbjct: 67 -VFD---DKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA-MGGFFA--ERDQFQE 119 Query: 117 SEKYLKQL--DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRS 174 K++ +L L +R +RA +SGG ++ L I RALM P+LL+LDEP+ G+ + + Sbjct: 120 RIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQ 179 Query: 175 MWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 ++ ++ L ++G TI L +A L ++++G +V + + ALLA Sbjct: 180 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLA 230 >b2677 ATP-binding component of transport system for glycine, betaine and proline (proV) {Escherichia coli K12-MG1655} Length = 400 Score = 90.9 bits (224), Expect = 1e-019 Identities = 60/203 (29%), Positives = 109/203 (53%), Gaps = 8/203 (3%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA---- 76 ++ L +E G+ + ++G +G+GKST + +++ L+ T G+V + G D+ K + +A Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAK-ISDAELRE 102 Query: 77 --KRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERA 134 ++++ +V Q F P TV G+ +E ++ L+Q+ L + Sbjct: 103 VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP 162 Query: 135 RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTIILTT 193 LSGGM++R+ +ARAL P +L++DE + +D +R M L L K TI+ + Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 Query: 194 HYLEEAEMLCRNIGIIQHGELVE 216 H L+EA + I I+Q+GE+V+ Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVVQ 245 >b1484 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 328 Score = 90.1 bits (222), Expect = 2e-019 Identities = 66/237 (27%), Positives = 124/237 (52%), Gaps = 28/237 (11%) Query: 5 LELQQLKKNYPG---GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTS-- 59 L++QQL ++PG V AL + LQ+ G+ L+G +G+GKS T +I L+ S Sbjct: 6 LDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYC 65 Query: 60 ---GRVSVFGYDLEKDVVNAKRQ---------LGLVPQE--FNFNPFETVQQIVVNQAGY 105 G++S+ G +DV+NA+ + + ++ QE NP + +++ + Sbjct: 66 VHRGQISLLG----EDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRH 121 Query: 106 YG-VERKEAYIRSEKYLKQLDLWGKRNERARM---LSGGMKRRLMIARALMHEPKLLILD 161 + + R+EA ++ L+++ + +R LSGGM++R+MIA A EP+L+I D Sbjct: 122 HQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCEPQLIIAD 181 Query: 162 EPTAGVDIELRRSMWGFLK-DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVEN 217 EPT +D+ ++ + LK GT ++ +H + LC ++ ++ G ++E+ Sbjct: 182 EPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIES 238 >b2149 ATP-binding component of methyl-galactoside transport and galactose taxis (mglA) {Escherichia coli K12-MG1655} Length = 506 Score = 88.2 bits (217), Expect = 6e-019 Identities = 62/230 (26%), Positives = 117/230 (50%), Gaps = 18/230 (7%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 LE+ + K++PG V+AL ++L+V +AL+G NGAGKST + + + K SG + Sbjct: 14 LEMSGINKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILF 72 Query: 65 FGYDLEKDVVNAKRQL----GLVPQEFNFNPFETVQQIVVNQA--GYYG-----VERKEA 113 G ++ D +AK L +V QE N +Q+ V++ G Y V++ + Sbjct: 73 QGKEI--DFHSAKEALENGISMVHQELNL----VLQRSVMDNMWLGRYPTKGMFVDQDKM 126 Query: 114 YIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRR 173 Y ++ +LD+ R LS + + IA+A + K++I+DEPT+ + + Sbjct: 127 YRETKAIFDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVN 186 Query: 174 SMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKAL 223 ++ ++ L ++G I+ +H +EE LC + +++ G+ + + L Sbjct: 187 HLFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGL 236 Score = 56.6 bits (135), Expect = 2e-009 Identities = 47/227 (20%), Positives = 101/227 (44%), Gaps = 26/227 (11%) Query: 11 KKNYPGGV------------QALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKT 58 K+N PG V ++R + + G+ + G GA ++ + + + K+ Sbjct: 257 KENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS 316 Query: 59 SGRVSVFGYDLEKD------------VVNAKRQLGLVPQ-EFNFNPFETVQQIVVNQAGY 105 +G +++ G + V +R G+ + FN + + N+ G Sbjct: 317 AGTITLHGKQINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGL 376 Query: 106 YGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTA 165 R ++ + ++ G R + LSGG +++++I R L+ +P++L+LDEPT Sbjct: 377 LDNSRMKSDTQWVIDSMRVKTPGHRTQIGS-LSGGNQQKVIIGRWLLTQPEILMLDEPTR 435 Query: 166 GVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHG 212 G+D+ + ++ + +L KG II+ + + E + I ++ +G Sbjct: 436 GIDVGAKFEIYQLIAELAKKGKGIIIISSEMPELLGITDRILVMSNG 482 >b1117 putative ATP-binding component of a transport system (ycfV) {Escherichia coli K12-MG1655} Length = 228 Score = 88.2 bits (217), Expect = 6e-019 Identities = 67/218 (30%), Positives = 110/218 (50%), Gaps = 9/218 (4%) Query: 11 KKNYPGGVQA--LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYD 68 K+ G VQ L + V G+ A++G +G+GKST + ++ L TSG V G Sbjct: 8 KRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQP 67 Query: 69 LEKDVVNAK-----RQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQ 123 + K AK ++LG + Q + P T + V + E R+ + LK Sbjct: 68 MSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLKA 127 Query: 124 LDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLN 183 + L + N R LSGG ++R+ IARAL++ P+L++ DEPT +D S++ L +LN Sbjct: 128 VGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELN 187 Query: 184 D-KGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSM 220 +GT ++ TH L+ A+ + R + ++ G L S+ Sbjct: 188 RLQGTAFLVVTHDLQLAKRMSRQLE-MRDGRLTAELSL 224 >b4087 putative ATP-binding component of a transport system (yjcW) {Escherichia coli K12-MG1655} Length = 510 Score = 87.0 bits (214), Expect = 1e-018 Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 9/209 (4%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV--FGYDLEKDV 73 G V AL+ ++L V G+ +ALLG NGAGKST + ++S + T G +++ Y+ Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHK 75 Query: 74 VNAKRQLGLVPQEFNFNPFETV-------QQIVVNQAGYYGVERKEAYIRSEKYLKQLDL 126 + A+ +G++ QE + TV + + G ++ +E +R+ L ++ L Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGL 135 Query: 127 WGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKG 186 +E+ LS K+ L IA+ LM + K++I+DEPT+ + + ++ + L +G Sbjct: 136 KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEG 195 Query: 187 TTIILTTHYLEEAEMLCRNIGIIQHGELV 215 T I+ +H L E +C +++ G V Sbjct: 196 TAIVYISHKLAEIRRICDRYTVMKDGSSV 224 Score = 59.7 bits (143), Expect = 2e-010 Identities = 45/217 (20%), Positives = 95/217 (43%), Gaps = 27/217 (12%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKD-------- 72 +R I V G+ G G+G++ + + + + G + + G D+ Sbjct: 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKK 338 Query: 73 ----VVNAKRQLGLVPQEFNFNPFETVQQIVVNQA----GYYGVERKEAYIRSEKYLK-Q 123 + ++R G P F Q + ++++ GY G + ++ + Q Sbjct: 339 GMAYITESRRDNGFFPN------FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQ 392 Query: 124 LDLWGKR----NERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL 179 +L + N+ LSGG +++++I++ L P+++I DEPT G+D+ + ++ + Sbjct: 393 RELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452 Query: 180 KDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 + L D G I++ + L E +C I + G L + Sbjct: 453 RQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 >b0933 putative ATP-binding component of a transport system (ycbE) {Escherichia coli K12-MG1655} Length = 255 Score = 86.7 bits (213), Expect = 2e-018 Identities = 82/277 (29%), Positives = 126/277 (45%), Gaps = 35/277 (12%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L L + K+Y + L +DL + AG F A++G +G GKST + +++ L T+G V Sbjct: 12 LLLNAVSKHYAENI-VLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVLA 70 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 L + + ++ Q+ P+++V V G G R A + L + Sbjct: 71 GTTPLAE----IQEDTRMMFQDARLLPWKSVIDNV--GLGLKGQWRDAA----RRALAAV 120 Query: 125 DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-N 183 L + E LSGG K+R+ +ARAL+H P LL+LDEP +D R M + L Sbjct: 121 GLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQDLIVSLWQ 180 Query: 184 DKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAPKSPLP 243 + G T++L TH + EA + + +I+ G++ LDL P P Sbjct: 181 EHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG------------------LDLTVDIPRP 222 Query: 244 KLDGYQYRLVDTATLEVEVL-REQGINSVFTQLSEQG 279 + G V A LE EVL R T+L +QG Sbjct: 223 RRLG----SVRLAELEAEVLQRVMQRGESETRLRKQG 255 >b1513 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 511 Score = 85.9 bits (211), Expect = 3e-018 Identities = 65/229 (28%), Positives = 114/229 (49%), Gaps = 20/229 (8%) Query: 17 GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 GV L+GID + G+ +ALLG NGAGKST + II+ + SG + + G + + Sbjct: 23 GVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVH 82 Query: 77 KRQLG--LVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLK-----QLDLWGK 129 QLG LVPQE P ++++ ++ +G+ +K+ ++ K L Q DL Sbjct: 83 AHQLGIYLVPQEPLLFPSLSIKENIL-----FGLAKKQLSMQKMKNLLAALGCQFDL--- 134 Query: 130 RNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTI 189 + A L ++ + I R LM + ++LILDEPTA + ++ L++L G I Sbjct: 135 -HSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQELLATGVGI 193 Query: 190 ILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSETFILDLAP 238 + +H L E + I +++ G + ++ ++L ++ I + P Sbjct: 194 VFISHKLPEIRQIADRISVMRDGTI----ALSGKTSELSTDDIIQAITP 238 Score = 82.8 bits (203), Expect = 3e-017 Identities = 53/209 (25%), Positives = 104/209 (49%), Gaps = 11/209 (5%) Query: 19 QALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKR 78 + R + L + AG+ L G GAG++ + L GR+ + G ++ K + Sbjct: 277 EGFRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERL 336 Query: 79 QLGLV--PQEFNFNPFE-------TVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDL-WG 128 GLV P++ + V + N G++ K+ E+Y + L++ + Sbjct: 337 LRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDN-ATLERYRRALNIKFN 395 Query: 129 KRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTT 188 + + AR LSGG +++++IA+ L P++LI+DEPT GVD+ R ++ L+ + + Sbjct: 396 QPEQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQNVA 455 Query: 189 IILTTHYLEEAEMLCRNIGIIQHGELVEN 217 ++L + LEE E++ + ++ GE+ + Sbjct: 456 VLLISSDLEEIELMADRVYVMHQGEITHS 484 >b1318 putative ATP-binding component of a transport system (ycjV) {Escherichia coli K12-MG1655} Length = 322 Score = 85.9 bits (211), Expect = 3e-018 Identities = 61/212 (28%), Positives = 105/212 (49%), Gaps = 8/212 (3%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L LQ ++K Y V ++ +L++ +F +GP+G GKSTT+ +I+ L + G + + Sbjct: 4 LSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKSTTLRMIAGLEEISGGDLLI 63 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G + DV R + +V Q + P TV N A +++ + E+ Sbjct: 64 DGKRM-NDVPAKARNIAMVFQNYALYPHMTVYD---NMAFGLKMQKIAKEVIDERVNWAA 119 Query: 125 DLWGKRNERAR---MLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKD 181 + G R R LSGG ++R+ + RA++ E + ++DEP + +D +LR M + Sbjct: 120 QILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFLMDEPLSNLDAKLRVQMRAEISK 179 Query: 182 LNDK-GTTIILTTHYLEEAEMLCRNIGIIQHG 212 L+ K TT+I TH EA + I I++ G Sbjct: 180 LHQKLNTTMIYVTHDQTEAMTMATRIVIMKDG 211 >b2547 putative ATP-binding component of a transport system (yphE) {Escherichia coli K12-MG1655} Length = 503 Score = 82.4 bits (202), Expect = 3e-017 Identities = 72/271 (26%), Positives = 126/271 (46%), Gaps = 29/271 (10%) Query: 12 KNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEK 71 K YPG V AL ++ + G+ ALLG NGAGKST I +++ SG + + LE Sbjct: 18 KRYPG-VVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEG 76 Query: 72 DVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYG--------VERKEAYIRSEKYLKQ 123 D R+ + + V+ + V + G ++ + +++ L+ Sbjct: 77 DEATLTRRAAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQA 136 Query: 124 LDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPT---AGVDIELRRSMWGFLK 180 L + + LS K+ + IAR + EP+++ILDEPT A ++EL S +K Sbjct: 137 LGVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSLASAEVELVISA---VK 193 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGE-----LVENTSMKALLAKLKSETFILD 235 ++ G +I +H +EE + +++ G+ ++ENTS +++ + + D Sbjct: 194 KMSALGVAVIYVSHRMEEIRRIASCATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHV-D 252 Query: 236 LAPKSPLPKLDGYQYRLVDTATLEVEVLREQ 266 +AP +P +VD A LEV LR + Sbjct: 253 IAPVAP--------QEIVDQAVLEVRALRHK 275 Score = 67.8 bits (164), Expect = 9e-013 Identities = 51/203 (25%), Positives = 100/203 (49%), Gaps = 11/203 (5%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVN--AKR 78 L I + G+ + G GAG+S + I L G + + G + + KR Sbjct: 278 LEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKR 337 Query: 79 QLGLVPQ---EFNFNPFETVQQIVV----NQAGYYGVERKEAYIR-SEKYLKQLDLWGKR 130 +G P+ E P+ V + V + GV + R +E+ ++++ + Sbjct: 338 GIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMTVKAAS 397 Query: 131 NERA-RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTI 189 +E LSGG +++++I R + ++L+LDEPT GVDIE ++ ++ +++L +G ++ Sbjct: 398 SETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVRELAAEGKSV 457 Query: 190 ILTTHYLEEAEMLCRNIGIIQHG 212 + + +EE ++C I ++QHG Sbjct: 458 VFISSEVEELPLVCDRILLLQHG 480 >b1900 ATP-binding component of high-affinity L-arabinose transport system (araG) {Escherichia coli K12-MG1655} Length = 504 Score = 82.0 bits (201), Expect = 5e-017 Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 6/217 (2%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L + + K +PG V+AL I AG +AL+G NGAGKST + I+S T+G V + Sbjct: 8 LSFRGIGKTFPG-VKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVI 66 Query: 65 FGYDLEKDVVNAKRQLG--LVPQEFNFNPFETV-QQIVVNQAGYYG--VERKEAYIRSEK 119 G ++ A G ++ QE + P TV + I + Q + G V R + Sbjct: 67 NGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGL 126 Query: 120 YLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL 179 LK L + + + LS G + + IA+AL K++ DEPT+ + +++ + Sbjct: 127 QLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLSAREIDNLFRVI 186 Query: 180 KDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 ++L +G I+ +H +EE L I + + G V+ Sbjct: 187 RELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVK 223 Score = 50.8 bits (120), Expect = 1e-007 Identities = 44/207 (21%), Positives = 92/207 (44%), Gaps = 20/207 (9%) Query: 24 IDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGY--DLEKDVVNAKRQLG 81 I L V +G+ L G GAG+S + + T+G+V + D+ K + Sbjct: 275 ISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM 334 Query: 82 LVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYI-------------RSEKYLKQLDLWG 128 L P++ V + N + + ++ ++ +++ L++ Sbjct: 335 LCPEDRKAEGIIPVHSVRDN----INISARRKHVLGGCVINNGWEENNADHHIRSLNIKT 390 Query: 129 KRNERARM-LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGT 187 E+ M LSGG +++ ++ R L E K+++LDEPT G+D+ + ++ + L +G Sbjct: 391 PGAEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV 450 Query: 188 TIILTTHYLEEAEMLCRNIGIIQHGEL 214 ++ + L E + I +++ GE+ Sbjct: 451 AVLFASSDLPEVLGVADRIVVMREGEI 477 >b1858 putative ATP-binding component of a transport system (yebM) {Escherichia coli K12-MG1655} Length = 251 Score = 82.0 bits (201), Expect = 5e-017 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 24/212 (11%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG 60 MT + L+ + ++ G + L + L+++ G LLGPNGAGKST + ++ LV G Sbjct: 1 MTSLVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEG 59 Query: 61 RVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ-AGYYGVERKEAYIRSEK 119 + N K ++G VPQ+ +T + VN+ KE + + Sbjct: 60 VIKR----------NGKLRIGYVPQKLYL---DTTLPLTVNRFLRLRPGTHKEDILPA-- 104 Query: 120 YLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL 179 LK++ N + LSGG +R+++ARAL++ P+LL+LDEPT GVD+ + +++ + Sbjct: 105 -LKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 Query: 180 KDL-NDKGTTIILTTHYL-----EEAEMLCRN 205 L + +++ +H L + E+LC N Sbjct: 164 DQLRRELDCGVLMVSHDLHLVMAKTDEVLCLN 195 >b2180 putative ATP-binding component of a transport system (yejF) {Escherichia coli K12-MG1655} Length = 529 Score = 81.6 bits (200), Expect = 6e-017 Identities = 68/221 (30%), Positives = 106/221 (47%), Gaps = 21/221 (9%) Query: 24 IDLQVEAGDFYALLGPNGAGKSTTIGIISSL-----VNKTSGRVSVFGYDLEKDVVNAKR 78 + LQ+EAG+ AL+G +G+GKS T I L V SG + G L R Sbjct: 28 VSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLR 87 Query: 79 -----QLGLVPQE--FNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRN 131 ++ ++ QE + NP T+++ + + R+EA R E L LD G R Sbjct: 88 GVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREA-ARGE-ILNCLDRVGIRQ 145 Query: 132 ERARM------LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-ND 184 R+ LSGG ++R+MIA AL+ P+LLI DEPT +D+ ++ + L++L + Sbjct: 146 AAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGE 205 Query: 185 KGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 ++ TH L L + ++Q+G VE L A Sbjct: 206 LNMGMLFITHNLSIVRKLAHRVAVMQNGRCVEQNYAATLFA 246 Score = 76.3 bits (186), Expect = 2e-015 Identities = 63/223 (28%), Positives = 111/223 (49%), Gaps = 17/223 (7%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLE----KDVVNA 76 ++ I + AG+ L+G +G+GKSTT + L+N + G + G L+ + ++ Sbjct: 302 VKNISFTLRAGETLGLVGESGSGKSTTGLALLRLIN-SQGSIIFDGQPLQNLNRRQLLPI 360 Query: 77 KRQLGLVPQEFN--FNPFETVQQIV-----VNQAGYYGVERKEAYIRSEKYLKQLDLWGK 129 + ++ +V Q+ N NP V QI+ V+Q +R++ I + ++ L + Sbjct: 361 RHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA---VMHEVGLDPE 417 Query: 130 RNER-ARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GT 187 R SGG ++R+ IARAL+ +P L+ILDEPT+ +D ++ + LK L K Sbjct: 418 TRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQL 477 Query: 188 TIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLAKLKSE 230 + +H L LC + I++ GE+VE + A + E Sbjct: 478 AYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARVFATPQQE 520 >b3540 putative ATP-binding component of dipeptide transport system (dppF) {Escherichia coli K12-MG1655} Length = 334 Score = 81.3 bits (199), Expect = 8e-017 Identities = 66/232 (28%), Positives = 107/232 (46%), Gaps = 22/232 (9%) Query: 5 LELQQLKKNYPGG---------VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLV 55 L+ LKK+YP V+AL G+ +E G A++G +G GKST +++ + Sbjct: 13 LQAIDLKKHYPVKKGMFAPERLVKALDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIE 72 Query: 56 NKTSGRVSVFGYDLEKDVVNAKR------QLGLVPQEFNFNPFETVQQIVVNQAGYYGVE 109 T G + G DL K A++ Q+ + NP + V QI+ Sbjct: 73 MPTGGELYYQGQDLLKHDPQAQKLRRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL 132 Query: 110 RKEAYIRSEKYLKQLDLWGKRNER----ARMLSGGMKRRLMIARALMHEPKLLILDEPTA 165 KE R EK L + G + E M SGG ++R+ IAR LM +P ++I DEP + Sbjct: 133 SKEQ--RREKALSMMAKVGLKTEHYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVS 190 Query: 166 GVDIELRRSMWGFLKDLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 +D+ +R + + DL + G + + +H L E + + ++ G VE Sbjct: 191 ALDVSVRAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVE 242 >b0588 ATP-binding component of ferric enterobactin transport (fepC) {Escherichia coli K12-MG1655} Length = 271 Score = 80.9 bits (198), Expect = 1e-016 Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%) Query: 8 QQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGY 67 +QL Y G + +++ G F A++GPNG GKST + +S L+ G V + G Sbjct: 11 EQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE 69 Query: 68 DLE----KDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVE------RKEAYIRS 117 ++ K+V R++GL+ Q TVQ++V G Y + RKE Sbjct: 70 HIQHYASKEVA---RRIGLLAQNATTPGDITVQELVAR--GRYPHQPLFTRWRKEDEEAV 124 Query: 118 EKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 K ++ + ++ LSGG ++R IA L E +++LDEPT +DI + + Sbjct: 125 TKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLE 184 Query: 178 FLKDLN-DKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALL 224 L +LN +KG T+ H L +A ++ ++ G++V + K ++ Sbjct: 185 LLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232 >b4287 ATP-binding component of citrate-dependent iron(III) transport protein (fecE) {Escherichia coli K12-MG1655} Length = 255 Score = 78.6 bits (192), Expect = 5e-016 Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 10/220 (4%) Query: 3 IALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRV 62 + L + L +Y G + L + L + G AL+GPNG GKST + S L+ SG Sbjct: 1 MTLRTENLTVSY-GTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSG-- 57 Query: 63 SVFGYDLEKDVVNAK---RQLGLVPQEFNFNPFETVQQIVVNQAG----YYGVERKEAYI 115 +VF D ++++++ R+L L+PQ TVQ++V +G E Sbjct: 58 TVFLGDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNA 117 Query: 116 RSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSM 175 R + Q + R LSGG ++R +A L +++LDEPT +DI + + Sbjct: 118 RVNVAMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDL 177 Query: 176 WGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELV 215 + +L +G T++ H L +A C + ++ +G ++ Sbjct: 178 MRLMGELRTQGKTVVAVLHDLNQASRYCDQLVVMANGHVM 217 >b3567 putative ATP-binding protein of xylose transport system (xylG) {Escherichia coli K12-MG1655} Length = 513 Score = 78.2 bits (191), Expect = 7e-016 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 8/220 (3%) Query: 1 MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTS- 59 M LE++ + K + G V+A+ + L++ AG+ +L G NG+GKST + ++ + S Sbjct: 1 MPYLLEMKNITKTF-GSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSY 59 Query: 60 -GRVSVFGYDLEKDVVN--AKRQLGLVPQEFNFNPFETVQQIVV--NQAGYYGVERKEAY 114 G + G +++ + ++ + ++ QE TV + + N+ + G+ + Sbjct: 60 EGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLM 119 Query: 115 -IRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRR 173 +R +K L Q+ L + R L G ++ + IA+AL + +LLILDEPTA + + Sbjct: 120 TLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASLTEQETS 179 Query: 174 SMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGE 213 + ++DL G I +H L E + + I +I+ G+ Sbjct: 180 ILLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQ 219 Score = 57.0 bits (136), Expect = 2e-009 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 6/100 (6%) Query: 137 LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYL 196 LSGG +++ ++AR L+ P++LILDEPT G+DI + ++ + L +G +I+ + L Sbjct: 406 LSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLINQLVQQGIAVIVISSEL 465 Query: 197 EEAEMLCRNIGIIQHGELVEN------TSMKALLAKLKSE 230 E L + ++ G+L N T + + A L+SE Sbjct: 466 PEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSE 505 >b0066 putative ATP-binding component of a transport system (yabJ) {Escherichia coli K12-MG1655} Length = 232 Score = 77.8 bits (190), Expect = 9e-016 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 8/215 (3%) Query: 26 LQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQ 85 L VE G+ A+LGP+GAGKST + +I+ + SG +++ G D + ++R + ++ Q Sbjct: 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVD-HTTMPPSRRPVSMLFQ 78 Query: 86 EFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARM---LSGGMK 142 E N TV Q N K ++ K G N AR+ LSGG + Sbjct: 79 ENNLFSHLTVAQ---NIGLGLNPGLKLNAVQQGKMHAIARQMGIDNLMARLPGELSGGQR 135 Query: 143 RRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK-DLNDKGTTIILTTHYLEEAEM 201 +R+ +AR L+ E +L+LDEP + +D LR+ M + + T+++ +H +E+A Sbjct: 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAAR 195 Query: 202 LCRNIGIIQHGELVENTSMKALLAKLKSETFILDL 236 + ++ G + LL+ S + +L + Sbjct: 196 IATRSVVVADGRIAWQGMTNELLSGKASASALLGI 230 >b1246 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppD) {Escherichia coli K12-MG1655} Length = 337 Score = 77.0 bits (188), Expect = 1e-015 Identities = 60/220 (27%), Positives = 110/220 (50%), Gaps = 23/220 (10%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVN 75 G V A+ ++ + AG+ ++G +G+GKS T + L+ +GR+ ++++N Sbjct: 34 GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILN 92 Query: 76 AKR---------QLGLVPQE--FNFNPFETV-QQIVVNQAGYYGVERKEAYIRSEKYLKQ 123 Q+ ++ Q+ + NP+ V +Q++ + + + EA+ E+ ++ Sbjct: 93 LPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAF---EESVRM 149 Query: 124 LDLWGKRNERARM------LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 LD R RM SGGM++R+MIA AL+ PKLLI DEPT +D+ ++ + Sbjct: 150 LDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMT 209 Query: 178 FLKDL-NDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 L +L + T II+ TH L +C + ++ G +E Sbjct: 210 LLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTME 249 >b1247 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppF) {Escherichia coli K12-MG1655} Length = 334 Score = 76.6 bits (187), Expect = 2e-015 Identities = 59/212 (27%), Positives = 102/212 (48%), Gaps = 10/212 (4%) Query: 15 PGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDL----- 69 P ++A+ G+ L++ G+ ++G +G GKST I LV T G V+ G +L Sbjct: 34 PKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKP 93 Query: 70 -EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYG--VERKEAYIRSEKYLKQLDL 126 E V + Q+ + NP T+ +I+ Y + R+E R + + ++ L Sbjct: 94 DEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGL 153 Query: 127 WGKR-NERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-ND 184 N SGG +R+ IARAL+ EPKL+I DEP + +D+ ++ + L+ L + Sbjct: 154 LPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE 213 Query: 185 KGTTIILTTHYLEEAEMLCRNIGIIQHGELVE 216 G ++I H L + + + ++ G VE Sbjct: 214 MGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 245 >b3455 ATP-binding component of high-affinity branched-chain amino acid transport system (livG) {Escherichia coli K12-MG1655} Length = 255 Score = 76.3 bits (186), Expect = 2e-015 Identities = 56/221 (25%), Positives = 108/221 (48%), Gaps = 20/221 (9%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVN 75 GG+ A+ ++L++ + +L+GPNGAGK+T ++ T G + + LE Sbjct: 16 GGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRDQHLEGLPGQ 75 Query: 76 AKRQLGLVPQEFN----FNPFETVQQIVVNQ--------------AGYYGVERKEAYIRS 117 ++G+V + F F ++ ++V Q + + EA R+ Sbjct: 76 QIARMGVV-RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPSFRRAQSEALDRA 134 Query: 118 EKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 +L+++ L N +A L+ G +RRL IAR ++ +P++L+LDEP AG++ + + + Sbjct: 135 ATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194 Query: 178 FLKDL-NDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVEN 217 + +L N TTI+L H ++ + I ++ G + N Sbjct: 195 LIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLAN 235 >b3725 ATP-binding component of high-affinity phosphate-specific transport system (pstB) {Escherichia coli K12-MG1655} Length = 257 Score = 75.5 bits (184), Expect = 4e-015 Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 16/235 (6%) Query: 14 YPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVN-----KTSGRVSVFGYD 68 Y G AL+ I+L + A +GP+G GKST + + + + G + + G + Sbjct: 19 YYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDN 78 Query: 69 L---EKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLD 125 + +D+ + ++G+V Q+ P I + + R + R + L + Sbjct: 79 ILTNSQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAA 138 Query: 126 LWGKRNERARM----LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKD 181 LW + ++ LSGG ++RL IAR + P++L+LDEP + +D + + + Sbjct: 139 LWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 198 Query: 182 LNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALL---AKLKSETFI 233 L + T+++ TH +++A + + GEL+E ++ L AK ++E +I Sbjct: 199 LK-QDYTVVIVTHNMQQAARCSDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYI 252 >b1483 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 308 Score = 75.5 bits (184), Expect = 4e-015 Identities = 66/256 (25%), Positives = 122/256 (47%), Gaps = 22/256 (8%) Query: 11 KKNYPGG----VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFG 66 +KN+ G V A+ GIDLQ+ G+ ++G +G GKST ++ ++ + G+ G Sbjct: 18 RKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSG 77 Query: 67 YDLEKDVVNAKRQLGLVPQE--FNFNPFETVQQIVVNQAGYYGVERKEAYIRS--EKYLK 122 ++R + +V Q+ + NP V +I+ + E R+ E+ Sbjct: 78 ---------SQRIMQMVFQDPLSSLNPRLPVWRIITEPL-WIAKRSSEQQRRALAEELAV 127 Query: 123 QLDLWGKRNERA-RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKD 181 Q+ + + +R SGG ++R+ IARAL +P +++LDEPT+ +DI ++ + L Sbjct: 128 QVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALDISVQAQILNLLVT 187 Query: 182 LNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVE-NTSMKALLAKLKSET-FILDLAP 238 L + G T +L +H + + + ++ G++VE + + L A T +LD P Sbjct: 188 LQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAPAHPYTRLLLDSLP 247 Query: 239 KSPLPKLDGYQYRLVD 254 P + + R D Sbjct: 248 AIDKPLEEEWALRKTD 263 >b0829 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 612 Score = 75.1 bits (183), Expect = 6e-015 Identities = 58/228 (25%), Positives = 112/228 (49%), Gaps = 22/228 (9%) Query: 18 VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEK---DVV 74 + A+R + ++ G+ A++G +G+GKS T + L+ + G V L++ +V+ Sbjct: 18 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVI 77 Query: 75 NAKRQ------------LGLVPQE--FNFNPFETV-QQIVVNQAGYYGVERKEAYIRSEK 119 Q + ++ QE + NP TV +QI + + R+EA + +++ Sbjct: 78 ELSEQNAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKR 137 Query: 120 YLKQLDLWGKRNERAR---MLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMW 176 L Q+ + + +R LSGGM++R+MIA AL P +LI DEPT +D+ ++ + Sbjct: 138 MLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL 197 Query: 177 GFLKDL-NDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKAL 223 +K L + +I TH + + + ++ GE VE +++ + Sbjct: 198 QLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQI 245 Score = 70.5 bits (171), Expect = 1e-013 Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 9/208 (4%) Query: 18 VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEK----DV 73 V A+ + + G+ +L+G +G+GKSTT + LV G + G ++ + Sbjct: 326 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL 385 Query: 74 VNAKRQLGLVPQE--FNFNPFETVQQIVVNQAGYYGV-ERKEAYIRSEKYLKQLDLWGKR 130 +R + + Q+ + +P +T+ ++ +G+ K+A R L+++ L + Sbjct: 386 QALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEH 445 Query: 131 NER-ARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-NDKGTT 188 R SGG ++R+ IARAL PK++I DE + +D+ +R + L DL D G Sbjct: 446 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIA 505 Query: 189 IILTTHYLEEAEMLCRNIGIIQHGELVE 216 + +H + E + + ++ G++VE Sbjct: 506 YLFISHDMAVVERISHRVAVMYLGQIVE 533 >b1290 putative ATP-binding protein of peptide transport system (sapF) {Escherichia coli K12-MG1655} Length = 268 Score = 73.6 bits (179), Expect = 2e-014 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 10/216 (4%) Query: 18 VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLE-KDVVNA 76 V+A++ + + G A++G NG+GKST +++ ++ TSG + + + L D Sbjct: 27 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFR 86 Query: 77 KRQLGLVPQE--FNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERA 134 +++ ++ Q+ + NP + + QI+ E R ++ ++ + + G + Sbjct: 87 SQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ--RRKQIIETMRMVGLLPDHV 144 Query: 135 ----RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTI 189 ML+ G K+RL +ARAL+ PK++I DE A +D+ +R + + +L +K G + Sbjct: 145 SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 204 Query: 190 ILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 I T ++ + + + ++ GE+VE S +LA Sbjct: 205 IYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLA 240 >b0765 ATP-binding component of molybdate transport (modC) {Escherichia coli K12-MG1655} Length = 352 Score = 73.6 bits (179), Expect = 2e-014 Identities = 58/197 (29%), Positives = 100/197 (50%), Gaps = 12/197 (6%) Query: 24 IDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGY---DLEKDV--VNAKR 78 I+ + A A+ G +GAGK++ I IS L GR+ + G D EK + KR Sbjct: 17 INETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKR 76 Query: 79 QLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLS 138 ++G V Q+ P V+ + YG+ K + +K + L + + LS Sbjct: 77 RVGYVFQDARLFPHYKVRGNL-----RYGMS-KSMVDQFDKLVALLGIEPLLDRLPGSLS 130 Query: 139 GGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-NDKGTTIILTTHYLE 197 GG K+R+ I RAL+ P+LL+LDEP A +DI +R + +L+ L + ++ +H L+ Sbjct: 131 GGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLD 190 Query: 198 EAEMLCRNIGIIQHGEL 214 E L + ++++G++ Sbjct: 191 EILHLADRVMVLENGQV 207 >b4097 ATP-binding component of phosphonate transport (phnK) {Escherichia coli K12-MG1655} Length = 252 Score = 72.4 bits (176), Expect = 4e-014 Identities = 57/231 (24%), Positives = 114/231 (49%), Gaps = 27/231 (11%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L + L Y G + + + G+ ++G +G+GK+T + IS+ + G + Sbjct: 6 LSVNNLTHLYAPG-KGFSDVSFDLWPGEVLGIVGESGSGKTTQLKSISARLTPQQGEIHY 64 Query: 65 FGYDLEKDVVNAKRQL-----GLVPQEFNFNPFETV-----------QQIVVNQAGYYGV 108 L +R+L G+V Q +P + + ++++ A +YG Sbjct: 65 ENRSLYAMSEADRRRLLRTEWGVVHQ----HPLDGLRRQVSAGGNIGERLMATGARHYGD 120 Query: 109 ERKEAYIRSEKYLKQLDLWGKR-NERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGV 167 R A +K+L+++++ R ++ SGGM++RL IAR L+ PKL+ +DEPT G+ Sbjct: 121 IRATA----QKWLEEVEIPANRIDDLPTTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGL 176 Query: 168 DIELRRSMWGFLKDL-NDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVEN 217 D+ ++ + L+ L + +++ TH L A +L + +++ G++VE+ Sbjct: 177 DVSVQARLLDLLRGLVVELNLAVVIVTHDLGVARLLADRLLVMKQGQVVES 227 >b3541 putative ATP-binding component of dipeptide transport system (dppD) {Escherichia coli K12-MG1655} Length = 327 Score = 71.2 bits (173), Expect = 8e-014 Identities = 62/227 (27%), Positives = 106/227 (46%), Gaps = 28/227 (12%) Query: 19 QALRGIDLQVEAGDFYALLGPNGAGKSTT----IGIISSLVNKTSGRVSVFGYDLEKDVV 74 +A+ I V+ G+ ++G +G+GKS + +G+I + ++ G DL++ + Sbjct: 21 RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQR--I 78 Query: 75 NAKRQLGLVPQEF---------NFNP-----FETVQQIVVNQAGYYGVERKEAYIRSEKY 120 + K + LV E + NP F+ ++ I V+Q G R+ A Sbjct: 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAI----DL 134 Query: 121 LKQL---DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 L Q+ D + + LSGGM +R+MIA A+ PKLLI DEPT +D+ ++ + Sbjct: 135 LNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194 Query: 178 FLKDLNDK-GTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKAL 223 L +L K ++L TH L I ++ G++VE A+ Sbjct: 195 LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAI 241 >b1756 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 217 Score = 70.1 bits (170), Expect = 2e-013 Identities = 54/184 (29%), Positives = 97/184 (52%), Gaps = 10/184 (5%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIG-IISSLVNKTSGRVSVFGYDLEKDVV-NAKR 78 L ++ V+ GD L+GP+G GKST +I +L + S ++ + D++ A+R Sbjct: 17 LTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWLNEQRIDILPTAQR 76 Query: 79 QLGLVPQE-FNFNPFETVQQIVVN-QAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARM 136 Q+G++ Q+ F+ F Q +++ A G R+ A L++ L G ++ Sbjct: 77 QIGILFQDALLFDQFSVGQNLLLALPATLKGNARRNAV---NDALERSGLEGAFHQDPAT 133 Query: 137 LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRS--MWGFLKDLNDKGTTIILTTH 194 LSGG + R+ + RAL+ +PK L+LDEP + +D+ LR + W F ++ ++ TH Sbjct: 134 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWVF-SEVRALAIPVVQVTH 192 Query: 195 YLEE 198 L++ Sbjct: 193 DLQD 196 >b0760 ATP-binding component of molybdate transport system (modF) {Escherichia coli K12-MG1655} Length = 490 Score = 68.6 bits (166), Expect = 5e-013 Identities = 59/193 (30%), Positives = 104/193 (53%), Gaps = 17/193 (8%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISS-LVNKTSGRVSVFGY--DLEKDVVNAK 77 L + QV G+ + ++GPNGAGKST + +++ S +++FG + + + K Sbjct: 276 LNNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIK 335 Query: 78 RQLGLVPQEFN--FNPFETVQQIVVNQAGYY---GVERKEAYIRSEKYLKQ-LDLWG--K 129 + +G V + + TV+ ++++ GY+ G+ + + R +K ++Q LD+ G K Sbjct: 336 KHIGYVSSSLHLDYRVSTTVRNVILS--GYFDSIGIYQAVSD-RQQKLVQQWLDILGIDK 392 Query: 130 RNERA--RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKG- 186 R A LS G +R +I RAL+ P LLILDEP G+D R+ + F+ L +G Sbjct: 393 RTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISEGE 452 Query: 187 TTIILTTHYLEEA 199 T ++ +H+ E+A Sbjct: 453 TQLLFVSHHAEDA 465 Score = 64.7 bits (156), Expect = 7e-012 Identities = 56/204 (27%), Positives = 93/204 (45%), Gaps = 9/204 (4%) Query: 26 LQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSG-RVSVFGYDLEKDVVNAKRQLGLVP 84 L + AGD +A +G NG+GKS ++ + G R S F + ++ LV Sbjct: 24 LTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQK---LVS 80 Query: 85 QEFNFNPFETV----QQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGG 140 E+ N + + A E K+A R + +Q + + R + LS G Sbjct: 81 DEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAP-RCMQLAQQFGITALLDRRFKYLSTG 139 Query: 141 MKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAE 200 R+ ++ +ALM EP LLILDEP G+D+ R+ + L L+ G T++L + +E Sbjct: 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIP 199 Query: 201 MLCRNIGIIQHGELVENTSMKALL 224 + G++ L E + + LL Sbjct: 200 EFVQFAGVLADCTLAETGAKEELL 223 >b0949 putative ATP-binding component of a transport system (uup) {Escherichia coli K12-MG1655} Length = 635 Score = 68.2 bits (165), Expect = 7e-013 Identities = 64/223 (28%), Positives = 99/223 (44%), Gaps = 37/223 (16%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQL 80 L +L +E + L+G NGAGKST + I++ GR+ E+D++ A+ Q Sbjct: 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNREQGLDDGRIIY-----EQDLIVARLQQ 73 Query: 81 GLVPQEFNFNPFETVQQIVVNQAGY----YGVERKEAYIRSEKYLKQL----------DL 126 P+ + ++ V + + QA Y + + R SEK L +L +L Sbjct: 74 D-PPRNVEGSVYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNL 132 Query: 127 WGKRNERARML--------------SGGMKRRLMIARALMHEPKLLILDEPTAGVDIELR 172 W N +L SGG R+ + RAL+ P++L+LDEPT +DIE Sbjct: 133 WQLENRINEVLAQLGLDPNVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDIETI 192 Query: 173 RSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELV 215 + GFLK N TII +H + I + G+LV Sbjct: 193 DWLEGFLKTFNG---TIIFISHDRSFIRNMATRIVDLDRGKLV 232 Score = 67.0 bits (162), Expect = 2e-012 Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 17/180 (9%) Query: 17 GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 G Q ++ QV GD AL+GPNG GK+T + ++ + SGR+ V G LE + Sbjct: 331 GKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHV-GTKLEVAYFDQ 389 Query: 77 KRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNER-AR 135 R +P +TV + V K ++ YL+ KR R Sbjct: 390 HRA--------ELDPDKTVMDNLAEGKQEVMVNGKPRHVLG--YLQDFLFHPKRAMTPVR 439 Query: 136 MLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTIILTTH 194 LSGG + RL++AR + LLILDEPT +D+E L++L D T++L +H Sbjct: 440 ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLE----LLEELIDSYQGTVLLVSH 495 >b0820 putative ATP-binding component of a transport system (ybiT) {Escherichia coli K12-MG1655} Length = 530 Score = 67.0 bits (162), Expect = 2e-012 Identities = 59/233 (25%), Positives = 103/233 (44%), Gaps = 48/233 (20%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVN 75 G I ++ G+ Y L+G NG+GKST + I+ + T G VS+ + Sbjct: 12 GSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSL----------D 61 Query: 76 AKRQLGLVPQE-FNFNPFETVQQIVVNQAGYYGV--ERKEAYIRSE-------------- 118 ++G + Q+ F F F + +++ + V ER Y E Sbjct: 62 PNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEEDGYKVADLEV 121 Query: 119 KYLKQLDLWGKRNERARMLSG-----------------GMKRRLMIARALMHEPKLLILD 161 KY ++D + +L G G K R+++A+AL +P +L+LD Sbjct: 122 KY-GEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDILLLD 180 Query: 162 EPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGEL 214 EPT +DI+ R W + LN++ +T+I+ +H M+C ++ + +GEL Sbjct: 181 EPTNNLDIDTIR--W-LEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGEL 230 Score = 61.6 bits (148), Expect = 6e-011 Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 13/172 (7%) Query: 4 ALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVS 63 ALE++ L K + G + ++L +E G+ A+LG NG GKST + + + SG V Sbjct: 319 ALEVEGLTKGFDNG-PLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTV- 376 Query: 64 VFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQ 123 K NA+ E+ F TV + + E+ I Q Sbjct: 377 -------KWSENARIGYYAQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQ 429 Query: 124 LDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSM 175 D+ + A++LSGG K R++ + +M +P +LI+DEPT +D+E S+ Sbjct: 430 DDI----KKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDMESIESL 477 >b0151 ATP-binding component of hydroxymate-dependent iron transport (fhuC) {Escherichia coli K12-MG1655} Length = 265 Score = 66.6 bits (161), Expect = 2e-012 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 17 GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 G L + L AG L+G NG+GKST + ++ + G + + LE A Sbjct: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 Query: 77 -KRQLGLVPQEFNFNPFETVQQIV-VNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERA 134 R++ +PQ+ TV+++V + + ++G + EK + + L G + Sbjct: 83 FARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH 142 Query: 135 RM---LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLN-DKGTTII 190 R+ LSGG ++R IA + + + L+LDEPT+ +DI + + + L+ ++G T+I Sbjct: 143 RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVI 202 Query: 191 LTTHYLEEAEMLCRNIGIIQHGELV 215 H + A C + ++ GE++ Sbjct: 203 AVLHDINMAARYCDYLVALRGGEMI 227 >b3479 ATP-binding protein of nickel transport system (nikD) {Escherichia coli K12-MG1655} Length = 254 Score = 65.5 bits (158), Expect = 4e-012 Identities = 54/216 (25%), Positives = 102/216 (47%), Gaps = 19/216 (8%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKS----TTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 + G+ L ++ G AL+G +G+GKS T+GI+ + V +T+G + G + + Sbjct: 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRG 78 Query: 77 KRQLGLVPQEFN-FNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERAR 135 + ++ + FNP T+ G +A + + ++ G N AR Sbjct: 79 IKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAA-----IEAVGLENA-AR 132 Query: 136 ML-------SGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GT 187 +L SGGM +R+MIA A++ E +I DEPT +D+ + + L+ + K Sbjct: 133 VLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARILDLLESIMQKQAP 192 Query: 188 TIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKAL 223 ++L TH + L ++ ++ G++VE ++ L Sbjct: 193 GMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETL 228 >b1682 putative ATP-binding component of a transport system (ynhD) {Escherichia coli K12-MG1655} Length = 248 Score = 63.9 bits (154), Expect = 1e-011 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 33/198 (16%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNK--TSGRVSVFGYDLEKDVVNAKR 78 LRG+ L V G+ +A++GPNG+GKST ++ + T G V G DL Sbjct: 17 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL--------- 67 Query: 79 QLGLVPQ----EFNFNPFETVQQI--VVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNE 132 L L P+ E F F+ +I V NQ R ++ L + D E Sbjct: 68 -LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEE 126 Query: 133 RARML---------------SGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWG 177 + +L SGG K+R I + + EP+L ILDE +G+DI+ + + Sbjct: 127 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVAD 186 Query: 178 FLKDLNDKGTTIILTTHY 195 + L D + I+ THY Sbjct: 187 GVNSLRDGKRSFIIVTHY 204 >b0449 putative ATP-binding component of a transport system (mdlB) {Escherichia coli K12-MG1655} Length = 593 Score = 63.2 bits (152), Expect = 2e-011 Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 14/229 (6%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 +E+ + Y L+ I+L V + +F AL+G G+GKST ++ T G + + Sbjct: 341 IEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 Query: 65 FGYDLEKDVVNAKRQ-LGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKY-LK 122 G L +A RQ + +V Q+ P + N + + + E L Sbjct: 401 DGRPLSSLSHSALRQGVAMVQQD----PVVLADTFLANVTLGRDISEERVWQALETVQLA 456 Query: 123 QL------DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMW 176 +L ++ E+ LS G K+ L +AR L+ P++LILDE TA +D +++ Sbjct: 457 ELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASIDSGTEQAIQ 516 Query: 177 GFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 L + + TT+++ H L + I ++ G+ VE + + LLA Sbjct: 517 HALAAVREH-TTLVVIAHRLSTI-VDADTILVLHRGQAVEQGTHQQLLA 563 >b0448 ATP-binding component of a transport system (mdlA) {Escherichia coli K12-MG1655} Length = 590 Score = 61.6 bits (148), Expect = 6e-011 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 7/202 (3%) Query: 20 ALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQ 79 AL ++ ++ G + GP G+GKST + +I + + G + L K +++ R Sbjct: 351 ALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 410 Query: 80 LGLVPQEFNFNPFETVQQIVV---NQAGYYGVER--KEAYIRSEKYLKQLDLWGKRNERA 134 V + F +TV + A +E + A + + + ER Sbjct: 411 RLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 470 Query: 135 RMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTH 194 MLSGG K+R+ IARAL+ ++LILD+ + VD + L+ +G T+I++ H Sbjct: 471 VMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWG-QGRTVIISAH 529 Query: 195 YLEEAEMLCRNIGIIQHGELVE 216 L A I ++QHG + + Sbjct: 530 RL-SALTEASEIIVMQHGHIAQ 550 >b3195 putative ATP-binding component of a transport system (yrbF) {Escherichia coli K12-MG1655} Length = 269 Score = 61.2 bits (147), Expect = 8e-011 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 18/214 (8%) Query: 24 IDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDL----EKDVVNAKRQ 79 I L V G A++GP+G GK+T + +I + G + G ++ + +++ Sbjct: 27 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 86 Query: 80 LGLVPQE----FNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERAR 135 + ++ Q + N F+ V + + A + + +L+ G R Sbjct: 87 MSMLFQSGALFTDMNVFDNVAYPLREHT------QLPAPLLHSTVMMKLEAVGLRGAAKL 140 Query: 136 M---LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDK-GTTIIL 191 M LSGGM RR +ARA+ EP L++ DEP G D + + +LN G T ++ Sbjct: 141 MPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV 200 Query: 192 TTHYLEEAEMLCRNIGIIQHGELVENTSMKALLA 225 +H + E + + I+ ++V + S +AL A Sbjct: 201 VSHDVPEVLSIADHAWILADKKIVAHGSAQALQA 234 >b3352 putative ATP-binding component of a transport system (yheS) {Escherichia coli K12-MG1655} Length = 637 Score = 58.5 bits (140), Expect = 5e-010 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 24/176 (13%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 L+++++ Y G L I L + G LLG NGAGKST I +++ + SG + + Sbjct: 313 LKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL 371 Query: 65 -----FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEK 119 GY + + + + P E ++Q + + G +G + Sbjct: 372 AKGIKLGYFAQHQLEYLRADESPIQHLARLAPQE-LEQKLRDYLGGFGFQ---------- 420 Query: 120 YLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSM 175 K E R SGG K RL++A + P LL+LDEPT +D+++R+++ Sbjct: 421 -------GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQAL 469 Score = 51.2 bits (121), Expect = 9e-008 Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 40/218 (18%) Query: 28 VEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEF 87 + G L+G NG GKST + ++ + ++ G + G QL V QE Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----------SWQLAWVNQET 73 Query: 88 NFNPFETVQQIVVNQAGYYGVERK--EAYIRSEKY--------LKQLDLWGKRNERARML 137 P ++ ++ Y +E + +A R++ + L +D W R+ A +L Sbjct: 74 PALPQAALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWSIRSRAASLL 133 Query: 138 -----------------SGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLK 180 SGG + RL +A+AL+ LL+LDEPT +D++ + +LK Sbjct: 134 HGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLK 193 Query: 181 DLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT 218 T+IL +H + + + I I+ + E T Sbjct: 194 SYQG---TLILISHDRDFLDPIVDKIIHIEQQSMFEYT 228 >b0490 putative ATP-binding component of a transport system (ybbL) {Escherichia coli K12-MG1655} Length = 225 Score = 58.2 bits (139), Expect = 7e-010 Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 13/208 (6%) Query: 16 GGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVN 75 G + L I+ + AG+F + GP+G GKST + I++SL++ TSG + G D+ Sbjct: 18 GDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 77 Query: 76 AKRQ----LGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGK-R 130 RQ P F +TV ++ + A +L++ L Sbjct: 78 IYRQQVSYCAQTPTLFG----DTVYDNLIFPWQIRNRQPDPAIFLD--FLERFALPDSIL 131 Query: 131 NERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFL-KDLNDKGTTI 189 + LSGG K+R+ + R L PK+L+LDE T+ +D + ++ + + + ++ + Sbjct: 132 TKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEMIHRYVREQNIAV 191 Query: 190 ILTTHYLEEAEMLCRNIGIIQH-GELVE 216 + TH +E + I + H GE+ E Sbjct: 192 LWVTHDKDEINHADKVITLQPHAGEMQE 219 >b4391 putative ATP-binding component of a transport system (yjjK) {Escherichia coli K12-MG1655} Length = 555 Score = 57.8 bits (138), Expect = 9e-010 Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 13/172 (7%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 LE+ L+K+Y G + + + G ++GPNGAGKST +IS SG +++ Sbjct: 324 LEVSNLRKSY-GDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITL 382 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G ++ V+ R + + +TV + V + E + S Y+ + Sbjct: 383 -GETVKLASVDQFRD--------SMDNSKTVWEEVSGGLDIMKIGNTE--MPSRAYVGRF 431 Query: 125 DLWG-KRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSM 175 + G + +R LSGG + RL +A+ L +L+LDEPT +DIE R++ Sbjct: 432 NFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDIETLRAL 483 >b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia coli K12-MG1655} Length = 205 Score = 57.8 bits (138), Expect = 9e-010 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 7/189 (3%) Query: 23 GIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGL 82 G+ + AG++ + G NGAGK+T + +++ L +G V G L + + + L Sbjct: 19 GLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLW 78 Query: 83 VPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMK 142 + + P + + +Y + A + + L Q L G + LS G + Sbjct: 79 IGHQ----PGIKTRLTALENLHFYHRDGDTA--QCLEALAQAGLAGFEDIPVNQLSAGQQ 132 Query: 143 RRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHY-LEEAEM 201 RR+ +AR + L ILDEP +D+ + + ++G +ILTTH L AE Sbjct: 133 RRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAES 192 Query: 202 LCRNIGIIQ 210 R I + Q Sbjct: 193 KIRRISLTQ 201 >b1291 putative ATP-binding protein of peptide transport system (sapD) {Escherichia coli K12-MG1655} Length = 330 Score = 57.8 bits (138), Expect = 9e-010 Identities = 63/245 (25%), Positives = 116/245 (47%), Gaps = 26/245 (10%) Query: 5 LELQQLKKNYPGG---VQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGR 61 L+++ L + G V+A+ + + + G+ L+G +G+GKS I VNK + R Sbjct: 4 LDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWR 62 Query: 62 VSVFGY---DLEKDVVNAKRQLGLVPQEFNF---------NPFETV-QQIVVNQAG--YY 106 V+ D++ ++A+ + LV + +P E V +Q++ N Y Sbjct: 63 VTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYK 122 Query: 107 GVERKEAYIRSEKYLKQLDLWGKRNERARM------LSGGMKRRLMIARALMHEPKLLIL 160 G + R + ++ L G ++ + M L+ G +++MIA AL ++P+LLI Sbjct: 123 GRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIA 182 Query: 161 DEPTAGVDIELRRSMWGFLKDLN-DKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENTS 219 DEPT ++ + ++ L LN + TTI+L +H L+ I ++ G+ VE Sbjct: 183 DEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242 Query: 220 MKALL 224 K L+ Sbjct: 243 SKELV 247 >b2211 putative ATP-binding component of a transport system (yojI) {Escherichia coli K12-MG1655} Length = 547 Score = 57.0 bits (136), Expect = 2e-009 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 13/218 (5%) Query: 5 LELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSV 64 LEL+ + Y ++ I+L ++ G+ L+G NG+GKST +++ L SG + + Sbjct: 323 LELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 Query: 65 FGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQL 124 G + + R+L F Q++ + + E ++ K +L Sbjct: 383 DGKPVSGEQPEDYRKLFSAV----FTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKL 438 Query: 125 DLWGKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDL-N 183 +L R + LS G K+R+ + AL E +++LDE A D RR + L L Sbjct: 439 ELSNGRIVNLK-LSKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQ 497 Query: 184 DKGTTIILTT---HYLEEAEMLCRNIGIIQHGELVENT 218 + G TI + HY A+ L +++G+L E T Sbjct: 498 EMGKTIFAISHDDHYFIHADRLLE----MRNGQLSELT 531 >b4096 ATP-binding component of phosphonate transport (phnL) {Escherichia coli K12-MG1655} Length = 226 Score = 56.6 bits (135), Expect = 2e-009 Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 16/187 (8%) Query: 21 LRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA---- 76 L L V AG+ L G +G+GKST + + + G++ + D D+V A Sbjct: 24 LNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDEGQIQIKHGDEWVDLVTAPARK 83 Query: 77 -----KRQLGLVPQEFNFNPFETVQQIVVNQAGYYGVERKEAYIRSEKYLKQLD----LW 127 K +G V Q P + ++V+ GV R+ ++ + L +L+ LW Sbjct: 84 VVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGVPREACAAKAARLLTRLNVPERLW 143 Query: 128 GKRNERARMLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLNDKGT 187 + SGG ++R+ IAR + + +L+LDEPTA +D + ++ +++ +G Sbjct: 144 ---HLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDAKNSAAVVELIREAKTRGA 200 Query: 188 TIILTTH 194 I+ H Sbjct: 201 AIVGIFH 207 Query= Z0139 orf, hypothetical protein (yadH) {Escherichia coli O157:H7 EDL933} (256 letters) Score E Sequences producing significant alignments: (bits) Value b0128 orf, hypothetical protein (yadH) {Escherichia coli K12-MG1... 452 e-128 >b0128 orf, hypothetical protein (yadH) {Escherichia coli K12-MG1655} Length = 256 Score = 452 bits (1163), Expect = e-128 Identities = 228/256 (89%), Positives = 228/256 (89%) Query: 1 MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQ 60 MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQ Sbjct: 1 MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGNLIGSRIGDMHGFSYMQ 60 Query: 61 FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHXXXXXXXXXXXXXXLFV 120 FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTH LFV Sbjct: 61 FIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFV 120 Query: 121 GILVTAISLFFVPFQVHSWXXXXXXXXXXXXXXSLAGLLNGVFAKTFDDISLVPTFVLTP 180 GILVTAISLFFVPFQVHSW SLAGLLNGVFAKTFDDISLVPTFVLTP Sbjct: 121 GILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTP 180 Query: 181 LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAF 240 LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAF Sbjct: 181 LTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDVPLVTTFGVLVVFIVAF 240 Query: 241 YLICWSLIQRGRGLRS 256 YLICWSLIQRGRGLRS Sbjct: 241 YLICWSLIQRGRGLRS 256 Query= Z0140 putative PTS enzyme II B component (yadI) {Escherichia coli O157:H7 EDL933} (146 letters) Score E Sequences producing significant alignments: (bits) Value b0129 putative PTS enzyme II B component (yadI) {Escherichia col... 300 3e-083 b1817 PTS enzyme IIAB, mannose-specific (manX) [2.7.1.69] {Esche... 48 3e-007 >b0129 putative PTS enzyme II B component (yadI) {Escherichia coli K12-MG1655} Length = 146 Score = 300 bits (767), Expect = 3e-083 Identities = 144/146 (98%), Positives = 145/146 (99%) Query: 1 MLGWVITCHDDRAQEILDVLEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEG 60 MLGWVITCHDDRAQEILD LEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEG Sbjct: 1 MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEG 60 Query: 61 VIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELG 120 VIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELG Sbjct: 61 VIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMACRETMTSSEFRERIVELG 120 Query: 121 APEVSSIWHQQQKNPPFVLKHNLYEY 146 APEVSS+WHQQQKNPPFVLKHNLYEY Sbjct: 121 APEVSSLWHQQQKNPPFVLKHNLYEY 146 >b1817 PTS enzyme IIAB, mannose-specific (manX) [2.7.1.69] {Escherichia coli K12-MG1655} Length = 323 Score = 47.8 bits (112), Expect = 3e-007 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 1/124 (0%) Query: 5 VITCHDDRAQEILDVLEKKHGALLQCRAVNFWRGLSSNMLSRMMCDALHEADSGEGVIFL 64 VI H A+++L E G ++F G ++ L L + D+ +GV+FL Sbjct: 6 VIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFL 65 Query: 65 TDIAGAPPYRVASLLSHKHSRCEVISGVTLP-LIEQMMACRETMTSSEFRERIVELGAPE 123 D G P+ AS + EVI+GV +P L+E +MA + + E VE G Sbjct: 66 VDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREG 125 Query: 124 VSSI 127 V ++ Sbjct: 126 VKAL 129 Query= Z0141 orf, hypothetical protein (yadE) {Escherichia coli O157:H7 EDL933} (409 letters) Score E Sequences producing significant alignments: (bits) Value b0130 orf, hypothetical protein (yadE) {Escherichia coli K12-MG1... 814 0.0 b1023 orf, hypothetical protein (ycdR) {Escherichia coli K12-MG1... 64 1e-011 >b0130 orf, hypothetical protein (yadE) {Escherichia coli K12-MG1655} Length = 409 Score = 814 bits (2103), Expect = 0.0 Identities = 404/409 (98%), Positives = 404/409 (98%) Query: 1 MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA 60 MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA Sbjct: 1 MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVTVGNIRAGQIIAVEPTA 60 Query: 61 ASYYAFNFGFDKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSVG 120 ASYYAFNFGF KGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPS G Sbjct: 61 ASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPSAG 120 Query: 121 SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLPVLTYHHILR 180 SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGL VLTYHHILR Sbjct: 121 SAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLSVLTYHHILR 180 Query: 181 DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD 240 DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD Sbjct: 181 DEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPARAVVITFDD 240 Query: 241 GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWEPKSLQFMSVSELNEIRDVFDFQS 300 GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKW PKSLQFMSVSELNEIRDVFDFQS Sbjct: 241 GLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWNPKSLQFMSVSELNEIRDVFDFQS 300 Query: 301 HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDKAVKAA 360 HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFND AVKAA Sbjct: 301 HTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYPFGGFNDNAVKAA 360 Query: 361 NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG 409 NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG Sbjct: 361 NDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQPQG 409 >b1023 orf, hypothetical protein (ycdR) {Escherichia coli K12-MG1655} Length = 672 Score = 64.3 bits (155), Expect = 1e-011 Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 36/239 (15%) Query: 166 PDNGLPVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKN 225 P NG +++H++ + + RF T+ A Q AWLR+ GY +S+ Q+ + Sbjct: 45 PHNGFVAISWHNVEDEAADQRFMSVRTS----ALREQFAWLRENGYQPVSIAQIREAHRG 100 Query: 226 KINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQ---KWEPKSLQ 282 LP +AVV+TFDDG +S +P+L+ + A V S + K+ + + Sbjct: 101 GKPLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVD 160 Query: 283 FMSVSELNEIRDV-----FDFQSHTHFLH-----RVDGYRRPILLSRS------------ 320 + ++R+V + SHT H G P+ ++R+ Sbjct: 161 REYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAA 220 Query: 321 --EHNILFDFARSR---RALAQFNPHVWYLSYPFGGFNDKAVKAANDAGFHLAVTTMKG 374 I D + R + NPHV+ +P+G N A++ G+ + T G Sbjct: 221 EYRERIRLDAVKMTEYLRTKVEVNPHVFV--WPYGEANGIAIEELKKLGYDMFFTLESG 277 Query= Z0142 aspartate 1-decarboxylase (panD) {Escherichia coli O157:H7 EDL933} (126 letters) Score E Sequences producing significant alignments: (bits) Value b0131 aspartate 1-decarboxylase (panD) [4.1.1.11] {Escherichia c... 254 1e-069 >b0131 aspartate 1-decarboxylase (panD) [4.1.1.11] {Escherichia coli K12-MG1655} Length = 126 Score = 254 bits (649), Expect = 1e-069 Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAI 60 MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAI Sbjct: 1 MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAI 60 Query: 61 AAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKA 120 AAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKA Sbjct: 61 AAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWRPNVAYFEGDNEMKRTAKA 120 Query: 121 IPVQVA 126 IPVQVA Sbjct: 121 IPVQVA 126 Query= Z0143 orf, hypothetical protein (yadD) {Escherichia coli O157:H7 EDL933} (298 letters) Score E Sequences producing significant alignments: (bits) Value b0132 orf, hypothetical protein (yadD) {Escherichia coli K12-MG1... 547 e-157 b2305 orf, hypothetical protein (yfcI) {Escherichia coli K12-MG1... 297 7e-082 b2244 orf, hypothetical protein (yfaD) {Escherichia coli K12-MG1... 281 4e-077 b3411 orf, hypothetical protein (yhgA) {Escherichia coli K12-MG1... 273 1e-074 b4339 orf, hypothetical protein (yjiQ) {Escherichia coli K12-MG1... 132 3e-032 b4338 orf, hypothetical protein (yjiP) {Escherichia coli K12-MG1... 129 3e-031 >b0132 orf, hypothetical protein (yadD) {Escherichia coli K12-MG1655} Length = 300 Score = 547 bits (1410), Expect = e-157 Identities = 274/298 (91%), Positives = 277/298 (92%) Query: 1 MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHS 60 MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHS Sbjct: 1 MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHS 60 Query: 61 TDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL 120 TDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL Sbjct: 61 TDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPIL 120 Query: 121 FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK 180 FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK Sbjct: 121 FYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQK 180 Query: 181 HIRQRDLMLLLEQLVTLIDEGYTSESQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGKS 240 HIRQRDLMLLLEQLVTLIDEGYTS SQLVAMQNYMLQRGHTEQADLFYGVLRDRETGG+S Sbjct: 181 HIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGES 240 Query: 241 MMTLAQWFEEXXXXXXXXXXXXXXXXXFAQRFLSKGMSREDVAEMTNLSLAEIDRLIN 298 MMTLAQWFEE FAQR LSKGMSREDVAEM NL LAEID++IN Sbjct: 241 MMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKGMSREDVAEMANLPLAEIDKVIN 298 >b2305 orf, hypothetical protein (yfcI) {Escherichia coli K12-MG1655} Length = 296 Score = 297 bits (760), Expect = 7e-082 Identities = 150/286 (52%), Positives = 202/286 (70%), Gaps = 5/286 (1%) Query: 5 STTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHSTDVL 64 ++TPHDAVFK FL H +TARDF++IHLP LR+LCDL TL LE SFI+E L+ + +D+L Sbjct: 6 TSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTTLKLEPNSFIDEDLRQYYSDLL 65 Query: 65 YSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQG 124 +SV+ Q GY++VVIEHQSKP++ MAFRMMRYSIAAM HL+A + +LPLV+P+LFY G Sbjct: 66 WSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAAMQNHLDAGYKELPLVLPMLFYHG 125 Query: 125 EATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQKHIRQ 184 +PYP S+CW D F P +AR++Y+S FPLVDIT+ PDDEIMQHR++A+LEL+QKHIRQ Sbjct: 126 CRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDITVVPDDEIMQHRKMALLELIQKHIRQ 185 Query: 185 RDLMLLLEQLVTLIDEGYTSESQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGK-SMMT 243 RDL+ L++Q+V+L+ G T++ QL A+ NY+LQ G ++ F G + +R K +MT Sbjct: 186 RDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMT 245 Query: 244 LAQWFEEXXXXXXXXXXXXXXXXXFAQRFLSKGMSREDVAEMTNLS 289 +A E AQ L +G+ RE V +T LS Sbjct: 246 IADRLRE----EGAMQGKHEEALRIAQEMLDRGLDRELVMMVTRLS 287 >b2244 orf, hypothetical protein (yfaD) {Escherichia coli K12-MG1655} Length = 299 Score = 281 bits (719), Expect = 4e-077 Identities = 144/293 (49%), Positives = 197/293 (67%), Gaps = 1/293 (0%) Query: 2 DAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHST 61 ++ +++PHDAVFK F+ ETARDFLEIHLP LR+LC+L TL LE SFIE+SL+ + + Sbjct: 3 ESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYS 62 Query: 62 DVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILF 121 DVL+SV+ GY++ VIEHQS +K MAFR+MRY+ AAM RH + +D++PLVVP+LF Sbjct: 63 DVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHQDKGYDRVPLVVPLLF 122 Query: 122 YQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQKH 181 Y GE +PYP S+ W D F P+LAR++Y F LVDITI PDDEIMQHRRIA+LEL+QKH Sbjct: 123 YHGETSPYPYSLNWLDEFDDPQLARQLYTEAFLLVDITIVPDDEIMQHRRIALLELIQKH 182 Query: 182 IRQRDLMLLLEQLVTLIDEGYTSESQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGKS- 240 IR RDL+ +++++ TL+ G+T++SQL + NY+LQ G T + F + +R K Sbjct: 183 IRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKER 242 Query: 241 MMTLAQWFEEXXXXXXXXXXXXXXXXXFAQRFLSKGMSREDVAEMTNLSLAEI 293 +MT+A+ + A R L +G RE V T L+ A+I Sbjct: 243 LMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADI 295 >b3411 orf, hypothetical protein (yhgA) {Escherichia coli K12-MG1655} Length = 292 Score = 273 bits (698), Expect = 1e-074 Identities = 138/290 (47%), Positives = 191/290 (65%), Gaps = 9/290 (3%) Query: 5 STTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHSTDVL 64 S+TPHDA+FK FL +TARDFL HLP + LCD+ TL LES SFI++ L+ +DVL Sbjct: 6 SSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRESYSDVL 65 Query: 65 YSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAMHRHLEADHDKLPLVVPILFYQG 124 +SV+ + PGY++ +IEHQS +K +AFRMMRY+IAAM HL+A + LP+VVP+LFY G Sbjct: 66 WSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAAMQNHLDAGYKTLPMVVPLLFYHG 125 Query: 125 EATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELLQKHIRQ 184 +PYP S+CW D F P+LAR++Y S FPL+D+T+ PDDEIMQHRR+A+LEL+QKHIRQ Sbjct: 126 IESPYPYSLCWLDCFADPKLARQLYASAFPLIDVTVMPDDEIMQHRRMALLELIQKHIRQ 185 Query: 185 RDLMLLLEQLVTLIDEGYTSESQLVAMQNYMLQRGHTEQADLFYGVLRDRETGGK-SMMT 243 RDLM L+EQ+ L+ GY ++ Q+ + NY+LQ G + + F + +R K S+MT Sbjct: 186 RDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMT 245 Query: 244 LAQWFEEXXXXXXXXXXXXXXXXXFAQRFLSKGMSREDVAEMTNLSLAEI 293 +A+ + A+ L G+ D+ T LS E+ Sbjct: 246 IAERLRQ--------EGEQSKALHIAKIMLESGVPLADIMRFTGLSEEEL 287 >b4339 orf, hypothetical protein (yjiQ) {Escherichia coli K12-MG1655} Length = 186 Score = 132 bits (332), Expect = 3e-032 Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 1/129 (0%) Query: 119 ILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITITPDDEIMQHRRIAILELL 178 +LFY G +PYP S+CW D F P AR++YN+ FPLVD+T+ PDDEI+QHRR+A+LEL+ Sbjct: 1 MLFYHGSRSPYPWSLCWLDEFADPTTARKLYNAAFPLVDVTVVPDDEIVQHRRVALLELI 60 Query: 179 QKHIRQRDLMLLLEQLVTLIDEGYTSESQLVAMQNYMLQRGHTEQADLFYGVLRDRETGG 238 QKHIRQRDLM L++QLV L+ ++SQ+ A+ NY+L G + + F L R Sbjct: 61 QKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYILLTGDEARFNEFISELTRRMPQH 120 Query: 239 KS-MMTLAQ 246 + +MT+A+ Sbjct: 121 RERIMTIAE 129 >b4338 orf, hypothetical protein (yjiP) {Escherichia coli K12-MG1655} Length = 103 Score = 129 bits (323), Expect = 3e-031 Identities = 59/98 (60%), Positives = 80/98 (81%) Query: 5 STTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTLHLESGSFIEESLKGHSTDVL 64 ++TPHDA+FK FL H +TARDF+EIHLP +LRELCDL++L LES SF++E L+ +D+L Sbjct: 6 TSTPHDALFKTFLTHPDTARDFMEIHLPKDLRELCDLDSLKLESASFVDEKLRALHSDIL 65 Query: 65 YSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAM 102 +SV+ + GY++VVIEHQS+ D MAFR+MRYS+A M Sbjct: 66 WSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAVM 103 Query= Z0144 pantothenate synthetase (panC) {Escherichia coli O157:H7 EDL933} (283 letters) Score E Sequences producing significant alignments: (bits) Value b0133 pantothenate synthetase (panC) [6.3.2.1] {Escherichia coli... 523 e-150 >b0133 pantothenate synthetase (panC) [6.3.2.1] {Escherichia coli K12-MG1655} Length = 283 Score = 523 bits (1346), Expect = e-150 Identities = 270/283 (95%), Positives = 270/283 (95%) Query: 1 MLIIETXXXXXXXXXXXXMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM 60 MLIIET MEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM Sbjct: 1 MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEAKARADVVVVSIFVNPM 60 Query: 61 QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG 120 QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG Sbjct: 61 QFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNGTETHTYVDVPGLSTMLEG 120 Query: 121 ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRA 180 ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRA Sbjct: 121 ASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIRKMVADMGFDIEIVGVPIMRA 180 Query: 181 KDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIIAIAGQELNEKGFRA 240 KDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEII IAGQELNEKGFRA Sbjct: 181 KDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAGERDLDEIITIAGQELNEKGFRA 240 Query: 241 DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVELA 283 DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVELA Sbjct: 241 DDIQIRDADTLLEVSETSKRAVILVAAWLGDARLIDNKMVELA 283 Query= Z0145 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) {Escherichia coli O157:H7 EDL933} (264 letters) Score E Sequences producing significant alignments: (bits) Value b0134 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) [2... 454 e-129 >b0134 3-methyl-2-oxobutanoate hydroxymethyltransferase (panB) [2.1.2.11] {Escherichia coli K12-MG1655} Length = 264 Score = 454 bits (1169), Expect = e-129 Identities = 231/264 (87%), Positives = 235/264 (89%) Query: 1 MKPTTIASLQKCKQEKKRFATITAYDYSFAKLFAEEGLNVMLVGDSLGMTVQGHESTLPV 60 MKPTTI+ LQK KQEKKRFATITAYDYSFAKLFA+EGLNVMLVGDSLGMTVQGH+STLPV Sbjct: 1 MKPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLPV 60 Query: 61 TVEDIAYHTTAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLV 120 TV DIAYHT AVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLV Sbjct: 61 TVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGEWLV 120 Query: 121 ETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGXXXXXXXXXXXXXXXXXXXXXXXX 180 ETV+MLTERAVPVCGHLGLTPQSVNIFGGYKVQGRG Sbjct: 121 ETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVL 180 Query: 181 XCVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDI 240 CVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDI Sbjct: 181 ECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDAFGITGGHIPKFAKNFLAETGDI 240 Query: 241 RAAVRQYMAEVESGVYPGEEHSFH 264 RAAVRQYMAEVESGVYPGEEHSFH Sbjct: 241 RAAVRQYMAEVESGVYPGEEHSFH 264 Query= Z0146 putative fimbrial protein (yadC) {Escherichia coli O157:H7 EDL933} (369 letters) Score E Sequences producing significant alignments: (bits) Value b0135 putative fimbrial-like protein (yadC) {Escherichia coli K1... 49 7e-007 >b0135 putative fimbrial-like protein (yadC) {Escherichia coli K12-MG1655} Length = 412 Score = 48.5 bits (114), Expect = 7e-007 Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 27/181 (14%) Query: 207 WINFYIDNDSLKFFVDEPTCATVALAQDQGNVSGNQVTLGNSYVSEVKNGLTREIPFSIR 266 ++NF ++N L PTC T L +V+G+ V +G +KNG + +PF I Sbjct: 239 YVNFTLNNVKLTL----PTCFTSILTGP--SVNGSTVRMGEYSSGTIKNGAS-PVPFDIS 291 Query: 267 AEYCYASK------ITVKLKAANKPS-DATLVGKTTGSASGVAVKVNSTYDNSKVLLKAD 319 + C + +T K+ N TL G T GV ++ +T N + LK + Sbjct: 292 LQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKGVGVLIEGLATSKNPLMTLKPN 351 Query: 320 GSNTV--DYNFAAWSNNLLF----------LPFTAQLVPDGSGNAVGVGTFSGNATFSFT 367 +N+V DY +++ ++ L F A L DG+ A+ G F +TF T Sbjct: 352 DTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDGN-IAIEPGEFKATSTFQVT 410 Query: 368 Y 368 Y Sbjct: 411 Y 411 Query= Z0147 putative fimbrial protein (yadK) {Escherichia coli O157:H7 EDL933} (196 letters) Score E Sequences producing significant alignments: (bits) Value b0136 putative fimbrial protein (yadK) {Escherichia coli K12-MG1... 142 1e-035 >b0136 putative fimbrial protein (yadK) {Escherichia coli K12-MG1655} Length = 198 Score = 142 bits (358), Expect = 1e-035 Identities = 77/192 (40%), Positives = 114/192 (59%), Gaps = 6/192 (3%) Query: 7 KIVHFLGLATALITPFAYSGQDVDLTAKIVPSTCQVEVSNNGVVDLGTVTLDYFADNVTP 66 +I+ FL L + P A +GQD+DL A + STC+ +SN G +DLG V + YF+ NVTP Sbjct: 11 RIILFLSLLFCIACP-AIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTP 69 Query: 67 TTDYAGGKTFNVNVVSC--DNIQTTQSQMKLDFQPQAGSLAQANNQIFSNEYEQQATGAK 124 + GGK F + V C +Q+ +DF+ +G +A + QIF+NE ++GA Sbjct: 70 ESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEI---SSGAS 126 Query: 125 NVGIVIFSAQPNQQTFNVRGTDGSSTAIYSVAPGNAVPSTWTFYSRMQRVNNALPPESGM 184 NVG+VIFS Q + TFNV G S ++Y V + S+W F +RMQ+++ AL SG Sbjct: 127 NVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQ 186 Query: 185 VRSQVIVNVSYE 196 + S V+V++ YE Sbjct: 187 LMSHVLVDIYYE 198 Query= Z0148 putative fimbrial protein (yadL) {Escherichia coli O157:H7 EDL933} (201 letters) Score E Sequences producing significant alignments: (bits) Value b0137 putative fimbrial protein (yadL) {Escherichia coli K12-MG1... 137 4e-034 >b0137 putative fimbrial protein (yadL) {Escherichia coli K12-MG1655} Length = 201 Score = 137 bits (346), Expect = 4e-034 Identities = 69/160 (43%), Positives = 102/160 (63%), Gaps = 2/160 (1%) Query: 41 MGTCSAQIMDNSNKVINEVVFGNVYISELGAKSKVQQFKIRFSNCSGLPQNSAQIVLAPN 100 MGTC+A ++++S++ I+ V FG+VYISE+ AK+KV+ FK++F +C+G+P AQI L Sbjct: 43 MGTCTATLVNDSDQDISVVDFGDVYISEINAKTKVKTFKLKFKDCAGIPNKKAQIKLTKR 102 Query: 101 GISCAGSQSSSAGFSNKFTDASAATRTAVEVWTTDTPESNGSTQFHCAQKIPVPVTLPAD 160 +C G+ + AGF+N T A A+ AVEVW+T TP + +TQF C VT+ Sbjct: 103 A-TCEGTANDGAGFANGSTAADKASAVAVEVWSTVTPATGSATQFSCVTPASQEVTISTA 161 Query: 161 TTTQPYDYPLSARMTVAEGRLVTDVRPGNFRSPTTFTITY 200 Y YP+SAR+ V + + V +V G F +P TFT+TY Sbjct: 162 ANAVVY-YPMSARLVVEKNKTVNNVTAGKFSAPATFTVTY 200 Query= Z0149 putative fimbrial protein (yadM) {Escherichia coli O157:H7 EDL933} (186 letters) Score E Sequences producing significant alignments: (bits) Value b0138 putative fimbrial-like protein (yadM) {Escherichia coli K1... 132 2e-032 >b0138 putative fimbrial-like protein (yadM) {Escherichia coli K12-MG1655} Length = 203 Score = 132 bits (331), Expect = 2e-032 Identities = 79/180 (43%), Positives = 106/180 (58%), Gaps = 9/180 (5%) Query: 14 LIGLGLPAVGSATDLNVDFXXXXXXXXXXXXXXEDGGPAVTGSNDEYSLTIPDVGLDKVA 73 L+G+ L ATD+NV+F G N+ Y+L IP +GLDK+A Sbjct: 26 LMGILLSPSVFATDINVEFTATVKATTCNITLT--GNNVTNDGNNNYTLRIPKMGLDKIA 83 Query: 74 TAAPEAQANFKLKASDCSNGYSKIFTTLTG--TTVSGKLIV---NEATSGAAGVGMGIKR 128 E+QA+FKL AS CS+G S I TTLTG ++ S KLI+ +++S + +GMG K+ Sbjct: 84 NKTTESQADFKLVASGCSSGISWIDTTLTGNASSSSPKLIIPQSGDSSSTTSNIGMGFKK 143 Query: 129 RDTADSTFFTPNNTDKFEWSADEKA--SGVPLTVALRETTAGAGRTGAFQAKATFNFTYE 186 R T D+TF PN+ +K WS DE G+ +TVALRET AG G G F+A ATFNF Y+ Sbjct: 144 RTTDDATFLKPNSAEKIRWSTDEMQPDKGLEMTVALRETDAGQGVPGNFRALATFNFIYQ 203 Query= Z0150 putative fimbrial usher protein (htrE) {Escherichia coli O157:H7 EDL933} (832 letters) Score E Sequences producing significant alignments: (bits) Value b0139 probable outer membrane porin protein involved in fimbrial... 1046 0.0 b0532 putative outer membrane protein, export function (sfmD) {E... 394 e-110 b4317 outer membrane protein; export and assembly of type 1 fimb... 388 e-109 b0940 putative outer membrane protein (ycbS) {Escherichia coli K... 381 e-106 b2109 putative outer membrane protein (yehB) {Escherichia coli K... 380 e-106 b3144 putative outer membrane protein (yraJ) {Escherichia coli K... 352 4e-098 b3046 putative membrane protein (yqiG) {Escherichia coli K12-MG1... 276 3e-075 b0718 putative outer membrane protein (ybgQ) {Escherichia coli K... 231 2e-061 b2338 putative outer membrane protein (yfcU) {Escherichia coli K... 215 1e-056 b3216 putative outer membrane protein (yhcD) {Escherichia coli K... 166 8e-042 b1505 putative outer membrane protein {Escherichia coli K12-MG1655} 143 4e-035 b2337 putative outer membrane protein {Escherichia coli K12-MG1655} 55 1e-008 >b0139 probable outer membrane porin protein involved in fimbrial assembly (htrE) {Escherichia coli K12-MG1655} Length = 865 Score = 1046 bits (2704), Expect = 0.0 Identities = 495/812 (60%), Positives = 643/812 (79%), Gaps = 7/812 (0%) Query: 1 MEYDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDI-GENSAA 59 +EYD +FLMG AS ID+ RY++GNP PG+Y+V V+VN Q + I FV I G+ +A Sbjct: 33 VEYDHTFLMGQNASNIDLSRYSEGNPAIPGVYDVSVYVNDQPIINQSITFVAIEGKKNAQ 92 Query: 60 ACLTHKNLAQLHIKQPE---QPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTI 116 AC+T KNL Q HI P+ + LLAR+ +CL+L + +A V +D +DQ LD+ + Sbjct: 93 ACITLKNLLQFHINSPDINNEKAVLLARDETLGNCLNLTEIIPQASVRYDVNDQRLDIDV 152 Query: 117 PQAYVLKSYGGYVDPSLWESGINAATLAYTLNAYHTSSDNDNSDSVYGAFNSGINLGAWH 176 PQA+V+K+Y YVDPSLWE+GINAA L+Y LN YH+ + ++S+Y AFN G+NLGAW Sbjct: 153 PQAWVMKNYQNYVDPSLWENGINAAMLSYNLNGYHSETPGRKNESIYAAFNGGMNLGAWR 212 Query: 177 FRARGNYNWTTDNGSDFDFQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSD 236 RA GNYNW TD+GS++DF++RY+QRDI ++RSQ+I+G++YTTGETFDSV++RG+RLYSD Sbjct: 213 LRASGNYNWMTDSGSNYDFKNRYVQRDIASLRSQLILGESYTTGETFDSVSIRGIRLYSD 272 Query: 237 SRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVV 296 SRMLP LAS+AP I GVAN+NAKVT+TQ GYKIYETTVPPG FVIDD+SPSG+GS+L+V Sbjct: 273 SRMLPPTLASFAPIIHGVANTNAKVTITQGGYKIYETTVPPGAFVIDDLSPSGYGSDLIV 332 Query: 297 TIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSEPNMGQASYYYGLNNL 356 TIEE+DGSKRTF+ PFSSVVQM RPGVGRWD S G+V+ D ++ EPN+ QASYYYGLNN Sbjct: 333 TIEESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQVLKDDIQDEPNLFQASYYYGLNNY 392 Query: 357 FTGYTGIQFTDNNYLAGLLGVGINTSIGAFAVDVTHSRAEIPDDKTYQGQSYRVTWNKLF 416 TGYTGIQ TDNNY AGLLG+G+NTS+GAF+ DVTHS IPDDKTYQGQSYRV+WNKLF Sbjct: 393 LTGYTGIQITDNNYTAGLLGLGLNTSVGAFSFDVTHSNVRIPDDKTYQGQSYRVSWNKLF 452 Query: 417 QDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQFTVSINQ 476 ++T TS N+AAYRYSTQ+YLGL+DAL LID+ KH D + +M+ YSRMKNQ TVSINQ Sbjct: 453 EETSTSLNIAAYRYSTQNYLGLNDALTLIDEVKHPEQDLEPKSMRNYSRMKNQVTVSINQ 512 Query: 477 PLNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNLQRSWNEDGEKDD 536 PL +DYGS ++SGSW+ YWA+ +R+ Y++GYS S SWGS+SV+ QRSWNEDG+ DD Sbjct: 513 PLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNSTSWGSYSVSAQRSWNEDGDTDD 572 Query: 537 AMYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLNVNSSGNTENNLVNYSVNAG 596 ++Y+S ++PIE +LG ++++SGF++++TQ+++DF G++QLNV+SSG ++N V+YSVN G Sbjct: 573 SVYLSFTIPIEKLLGTEQRTSGFQSIDTQISSDFKGNNQLNVSSSGYSDNARVSYSVNTG 632 Query: 597 YSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGGFVLHSGGLTFTNN 656 Y+++K + DL+ VGGY +YE DNS+Q S+STDGGFVLHSGGLTF+N+ Sbjct: 633 YTMNKASKDLSYVGGYASYESPWGTLAGSISANSDNSRQVSLSTDGGFVLHSGGLTFSND 692 Query: 657 SFSSNDTLVLINALGAKGARINNSNNEIDRWGYAVTSSVSPYRENRVGLNIETLENDVEL 716 SFS +DTL ++ A GA+GARIN N+ IDRWGY VTS++SPY ENR+ L+I LENDVEL Sbjct: 693 SFSDSDTLAVVQAPGAQGARINYGNSTIDRWGYGVTSALSPYHENRIALDINDLENDVEL 752 Query: 717 KSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEVY--QGEVMIGSMGQG 774 KSTSA VPR GSVV FET +G+SA++NIT ++GK+IPFAA++Y QG V IG++GQG Sbjct: 753 KSTSAVAVPRQGSVVFADFETVQGQSAIMNITRSDGKNIPFAADIYDEQGNV-IGNVGQG 811 Query: 775 GQAFVRGINDSGELIVRWYENNQTIDCKLHYQ 806 GQAFVRGI G + ++W E ++ + C HYQ Sbjct: 812 GQAFVRGIEQQGNISIKWLEQSKPVSCLAHYQ 843 >b0532 putative outer membrane protein, export function (sfmD) {Escherichia coli K12-MG1655} Length = 867 Score = 394 bits (1013), Expect = e-110 Identities = 278/854 (32%), Positives = 431/854 (50%), Gaps = 81/854 (9%) Query: 3 YDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIGENSA---- 58 ++ +FL+ G S D+ R+ +GN P G+Y V ++ N + S +I F EN+ Sbjct: 39 FNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSG 98 Query: 59 --AACLTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTI 116 C L ++ + P LA++ + C++L K+ A + FD + L++TI Sbjct: 99 GLMPCFNQVLLERIGLNSSAFPE--LAQQ-QNNKCINLLKAVPDATINFDFAAMRLNITI 155 Query: 117 PQAYVLKSYGGYVDPSLWESGINAATLAYTLNAYHTSSDNDNSDSVYGAFNSGINLGAWH 176 PQ +L S GY+ P W+ GI A L Y T + + +DS + + SGIN+G W Sbjct: 156 PQIALLSSAHGYIPPEEWDEGIPALLLNYNF----TGNRGNGNDSYFFSELSGINIGPWR 211 Query: 177 FRARGNYNWTTDNG---SDFDFQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRL 233 R G++N+ NG ++ ++QR I ++S+++MGD T + FD V RGVRL Sbjct: 212 LRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRL 271 Query: 234 YSDSRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSE 293 YS M P + +APT+RG+A + A++T+ Q+G+ IY++ V PG F I D+ P+ + Sbjct: 272 YSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGD 331 Query: 294 LVVTIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKV-IDDSLRSEPNMGQASYYYG 352 L VTI+E DG+++ +T P+S+V +QR G ++D +AG +S +S P Q + G Sbjct: 332 LDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGG 391 Query: 353 LNNLFTGYTGIQFTDNNYLAGLLGVGINT-SIGAFAVDVTHSRAEIPDDKTYQGQSYRVT 411 L FT Y G Q + NY A LLG+G N + GA ++DVTH+R+++ D ++G S R Sbjct: 392 LPQEFTAYGGTQLS-ANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFL 450 Query: 412 WNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSAD---EDKNTMQTYSRM-- 466 + K GT+F L YRYSTQ + L D + D D+ + Y + Sbjct: 451 YAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNYHNLRF 510 Query: 467 --KNQFTVSINQPLNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNL 524 K++ ++++Q LN D+GSL+ISG+ YW ++S T Y VGY+ SW S +L Sbjct: 511 SRKDRLQLNVSQSLN----DFGSLYISGTHQKYWNTSDSDTWYQVGYTS--SWVGISYSL 564 Query: 525 QRSWNED-GEKDDAMYV--SVSVPIENILGGKRKS------SGFRNLNTQLNTDFDGS-- 573 SWNE G D+ V +VSVP N+L +R + + + N N++ S Sbjct: 565 SFSWNESVGIPDNERIVGLNVSVPF-NVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623 Query: 574 ----------HQLNVN-SSGNTENNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXX 622 H L+ + S G+T NN S A + ++GG NY+ Sbjct: 624 AGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQ-----AAYGTLGGGYNYDR----- 673 Query: 623 XXXXXXXXDNSQQYSISTDGGFVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNN 682 + + GG V H G+T S DT VLI A GA G RI N Sbjct: 674 ---------DQHDVNWQLSGGVVGHENGITL---SQPLGDTNVLIKAPGAGGVRIENQTG 721 Query: 683 EIDRW-GYAVTSSVSPYRENRVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGR 741 + W GYAV + YR NR+ L+ T+ N ++++ ++ VP G++V F+T G Sbjct: 722 ILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGV 781 Query: 742 SAVLNITAANGKSIPFAAEVYQGEVMIGSM-GQGGQAFVRGINDSGELIVRWYENNQTID 800 A++ +T GK +PF + V + I SM G GQ ++ G SGEL+V+W + + Sbjct: 782 RALITVT-QGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS-R 839 Query: 801 CKLHYQFPAQPQTQ 814 C HY P Q Q Sbjct: 840 CIAHYVLPKQSLQQ 853 >b4317 outer membrane protein; export and assembly of type 1 fimbriae, interrupted (fimD) {Escherichia coli K12-MG1655} Length = 878 Score = 388 bits (996), Expect = e-109 Identities = 264/842 (31%), Positives = 419/842 (49%), Gaps = 52/842 (6%) Query: 3 YDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPF-VDIGENSAAAC 61 ++ FL + D+ R+ G PPG Y V +++N ++ ++ F E C Sbjct: 49 FNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTFNTGDSEQGIVPC 108 Query: 62 LTHKNLAQLHIKQPEQP-VTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAY 120 LT LA + + + LLA ++ C+ L + A D Q L+LTIPQA+ Sbjct: 109 LTRAQLASMGLNTASVAGMNLLA----DDACVPLTTMVQDATAHLDVGQQRLNLTIPQAF 164 Query: 121 VLKSYGGYVDPSLWESGINAATLAYTLNAYHTSSD-NDNSDSVYGAFNSGINLGAWHFRA 179 + GY+ P LW+ GINA L Y + + NS Y SG+N+GAW R Sbjct: 165 MSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAW--RL 222 Query: 180 RGNYNWTTDN-----GSDFDFQ--DRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVR 232 R N W+ ++ GS +Q + +L+RDI +RS++ +GD YT G+ FD +N RG + Sbjct: 223 RDNTTWSYNSSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGINFRGAQ 282 Query: 233 LYSDSRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGS 292 L SD MLP + +AP I G+A A+VT+ Q+GY IY +TVPPG F I+DI +G Sbjct: 283 LASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSG 342 Query: 293 ELVVTIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSE-PNMGQASYYY 351 +L VTI+EADGS + FT P+SSV +QR G R+ +AG+ + + E Q++ + Sbjct: 343 DLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRFFQSTLLH 402 Query: 352 GLNNLFTGYTGIQFTDNNYLAGLLGVGINT-SIGAFAVDVTHSRAEIPDDKTYQGQSYRV 410 GL +T Y G Q D Y A G+G N ++GA +VD+T + + +PDD + GQS R Sbjct: 403 GLPAGWTIYGGTQLAD-RYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRF 461 Query: 411 TWNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQF 470 +NK ++GT+ L YRYST Y D + ++ + +Q + + + Sbjct: 462 LYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQD--GVIQVKPKFTDYY 519 Query: 471 TVSINQ----PLNIAYE--DYGSLFISGSWTYYWAANNSRTEYNVGYS---KSVSWGSFS 521 ++ N+ L + + +L++SGS YW +N ++ G + + ++W + S Sbjct: 520 NLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW-TLS 578 Query: 522 VNLQRSWNEDGEKDDAMYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLN---V 578 +L ++ + G +D + ++V++P + L KS + + SH LN Sbjct: 579 YSLTKNAWQKG-RDQMLALNVNIPFSHWLRSDSKSQW-----RHASASYSMSHDLNGRMT 632 Query: 579 NSSG----NTENNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQ 634 N +G E+N ++YSV GY+ + ++ LNY D Q Sbjct: 633 NLAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQ 692 Query: 635 QYSISTDGGFVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDRW-GYAVTS 693 Y GG + H+ G+T NDT+VL+ A GAK A++ N W GYAV Sbjct: 693 LY-YGVSGGVLAHANGVTLGQ---PLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLP 748 Query: 694 SVSPYRENRVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGK 753 + YRENRV L+ TL ++V+L + A VP G++V F+ G ++ +T N K Sbjct: 749 YATEYRENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLT-HNNK 807 Query: 754 SIPFAAEV-YQGEVMIGSMGQGGQAFVRGINDSGELIVRWYENNQTIDCKLHYQFPAQPQ 812 +PF A V + G + GQ ++ G+ +G++ V+W E + C +YQ P + Q Sbjct: 808 PLPFGAMVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGE-EENAHCVANYQLPPESQ 866 Query: 813 TQ 814 Q Sbjct: 867 QQ 868 >b0940 putative outer membrane protein (ycbS) {Escherichia coli K12-MG1655} Length = 866 Score = 381 bits (978), Expect = e-106 Identities = 258/838 (30%), Positives = 422/838 (50%), Gaps = 54/838 (6%) Query: 3 YDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIG-ENSAAAC 61 +D +F + D+ R+ +G PG+Y V + +N + + FV+I E AAC Sbjct: 39 FDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAAC 98 Query: 62 LTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAYV 121 LT ++L + + P ++ +++ C+ LA+ A V F+ + L++++PQ + Sbjct: 99 LTTESLDAMGVNTDAFPAF---KQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAI 155 Query: 122 LKSYGGYVDPSLWESGINAATLAYTL---NAYHTSSDNDNSDSVYGAFNSGINLGAWHFR 178 + GYV P W+ GINA L Y+ N+ H+S+D+D+ DS + NSG+NLG W R Sbjct: 156 KSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPW--R 213 Query: 179 ARGNYNWTTDNGSDFDFQD--RYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSD 236 R N W+ +G ++++ YLQR + ++ ++ +GD YT G+ FDSV+ RGV+L SD Sbjct: 214 LRNNSTWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASD 273 Query: 237 SRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVV 296 MLP +L +AP +RG+A SNA++T+ Q+GY IY+T V PG F I D+ + +L+V Sbjct: 274 DNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLV 333 Query: 297 TIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKV-IDDSLRSEPNMGQASYYYGLNN 355 I+EADGS +++ PFSSV +QR G ++ + K + + + E QA+ +G Sbjct: 334 EIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGPW 393 Query: 356 LFTGYTGIQFTDNNYLAGLLGVGINT-SIGAFAVDVTHSRAEIPDDKTYQGQSYRVTWNK 414 T Y G Q+ + Y A + G+G N GA + D T +++ + D ++GQSYR + K Sbjct: 394 GTTWYGGGQYAE-YYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAK 452 Query: 415 LFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQF---- 470 GT+F L YRYST + L D + D + +D++T +SR N F Sbjct: 453 TLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGDDEDT-PMWSRYYNLFYTKR 511 Query: 471 ---TVSINQPLNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNLQRS 527 V+I+Q L +YGS ++SGS YW + GY+ + ++L S Sbjct: 512 GKLQVNISQQLG----EYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIK----DLSLGIS 563 Query: 528 WNEDGEK-----DDAMYVSVSVPIENILG------GKRKSSGFRNLNTQLNTDFDGSHQL 576 WN + D ++ S+P+ +L ++K+ + NT ++ + + L Sbjct: 564 WNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHTTQNL 623 Query: 577 NVNSSGNTENNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNS-QQ 635 + + + NL +YSV GY+ + G A+ ++Y+ + S QQ Sbjct: 624 GLTETLLDDGNL-SYSVQQGYN---SEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQ 679 Query: 636 YSISTDGGFVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDRW-GYAVTSS 694 + + G V HS G+T S +T VLI A GA+ R+ NS W GY V Sbjct: 680 LNYALSGSLVAHSQGITLGQ---SLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPY 736 Query: 695 VSPYRENRVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKS 754 + YRENR+ L+ +L+ +V+L++ VP G++VL F G + VL T+ G Sbjct: 737 ATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAG-ARVLMKTSKQGIP 795 Query: 755 IPFAAEVYQGEVMI--GSMGQGGQAFVRGINDSGELIVRWYENNQTIDCKLHYQFPAQ 810 + F A V G + G ++ G+ G + VRW E I C ++Y+ Q Sbjct: 796 LRFGAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQI-CHINYELTEQ 852 >b2109 putative outer membrane protein (yehB) {Escherichia coli K12-MG1655} Length = 826 Score = 380 bits (976), Expect = e-106 Identities = 242/789 (30%), Positives = 396/789 (50%), Gaps = 37/789 (4%) Query: 3 YDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIGENSAAACL 62 +D+ F++G N PG Y++ ++VN Q EI D N CL Sbjct: 27 FDTHFMIGGMKDQQVANIRLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKD---NPQETCL 83 Query: 63 THKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAYVL 122 + + + +L I + CL + + +D LD ++PQA+V Sbjct: 84 SREVIKRLGINSDNF--------ASGKQCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVE 135 Query: 123 KSYGGYVDPSLWESGINAATLAYTLNAYHTS-SDNDNSDSVYGAFNSGINLGAWHFRARG 181 + GYV P WE GINA +Y L+ Y++ + N+ S Y FNSG+NL W + Sbjct: 136 ELESGYVPPENWERGINAFYTSYYLSQYYSDYKASGNNKSTYVRFNSGLNLLGWQLHSDA 195 Query: 182 NYNWTTDNGSDFDFQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSDSRMLP 241 +++ T +N + YL+R + + +GD YT+ + FDSV RGVRL+ D +MLP Sbjct: 196 SFSKTNNNPGVWKSNTLYLERGFAQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLP 255 Query: 242 SALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVVTIEEA 301 ++ ++ P ++G+A SNA VT+ Q+G+ +Y+ VPPG F I D+ +G G++L V+++EA Sbjct: 256 NSKQNFTPRVQGIAQSNALVTIEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEA 315 Query: 302 DGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSEPNMGQASYYYGLNNLFTGYT 361 DGS T+ P+++V M +PGV ++D +AG+ + + + QA Y YG NNL T Y Sbjct: 316 DGSVTTYLVPYAAVPNMLQPGVSKYDLAAGRSHIEGASKQSDFVQAGYQYGFNNLLTLYG 375 Query: 362 GIQFTDNNYLAGLLGVGINTSIGAFAVDVTHSRAEIPDDKTYQGQSYRVTWNKLFQDTGT 421 G NNY A LG G NT IGA +VD T S ++ + + GQSY++ +NK T T Sbjct: 376 G-SMVANNYYAFTLGAGWNTRIGAISVDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTST 434 Query: 422 SFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSR----MKNQFTVSINQP 477 F LAA+RYS++DY +D + + + + D + Y + KN F+ +++Q Sbjct: 435 RFGLAAWRYSSRDYRTFNDHVWANNKDNYRRDENDVYDIADYYQNDFGRKNSFSANMSQS 494 Query: 478 LNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNLQRSWNEDGEKDDA 537 L E +GS+ +S W YW + S +Y + YS ++ S+++ ++++E+ ++ Sbjct: 495 LP---EGWGSVSLSTLWRDYWGRSGSSKDYQLSYSNNLRRISYTLAASQAYDENHHEEKR 551 Query: 538 MYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFD--GSHQLNVNSSGNT-ENNLVNYSVN 594 + +S+P + G S+ R + +T FD G N SG + NY VN Sbjct: 552 FNIFISIPFD---WGDDVSTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSRDQFNYGVN 608 Query: 595 AGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGGFVLHSGGLTFT 654 + ++ G+ + G L + +Q S GG V SGG+ Sbjct: 609 LSH---QHQGNETTAGANLTWN-APVATVNGSYSQSSTYRQAGASVSGGIVAWSGGVNLA 664 Query: 655 NNSFSSNDTLVLINALGAKGARINNSN-NEIDRWGYAVTSSVSPYRENRVGLNIETLEND 713 N ++T ++NA G K A +N +R G + ++PYREN + L++ +++ Sbjct: 665 NR---LSETFAVMNAPGIKDAYVNGQKYRTTNRNGVVIYDGMTPYRENHLMLDVSQSDSE 721 Query: 714 VELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEV--YQGEVMIGSM 771 EL+ P G+VVL F+TD+ + + A+G+S+ F EV G IG + Sbjct: 722 AELRGNRKIAAPYRGAVVLVNFDTDQRKPWFIKALRADGQSLTFGYEVNDIHGH-NIGVV 780 Query: 772 GQGGQAFVR 780 GQG Q F+R Sbjct: 781 GQGSQLFIR 789 >b3144 putative outer membrane protein (yraJ) {Escherichia coli K12-MG1655} Length = 838 Score = 352 bits (904), Expect = 4e-098 Identities = 255/821 (31%), Positives = 404/821 (49%), Gaps = 65/821 (7%) Query: 11 TGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIGENSAAACLTHKNLAQL 70 +G T D+ R+++ PG Y V +++N + S +I F E T + L +L Sbjct: 55 SGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLREL 114 Query: 71 HIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAYVLKSYGGYVD 130 IK E P LA + ++ L + FD + Q L+L+IPQ + + GYV Sbjct: 115 GIKVDEIPA--LAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQIALYRDARGYVS 172 Query: 131 PSLWESGINAATLAYTLNAYHTSSDN-----DNSDSVYGAFNSGINLGAWHFRARGNYN- 184 PS W+ GI Y+ T SDN + S Y +G N G W R NY+ Sbjct: 173 PSRWDDGIPTLFTNYSF----TGSDNRYRQGNRSQRQYLNMQNGANFGPWRLR---NYST 225 Query: 185 WT-TDNGSDFDFQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSDSRMLPSA 243 WT D S ++ YLQRDI A++SQ+++G++ T+G F S GV+L SD MLP++ Sbjct: 226 WTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNS 285 Query: 244 LASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVVTIEEADG 303 +APT+RG+ANS+A VT+ Q+GY IY++ V G F I+D+ PS +L VTIEE+DG Sbjct: 286 QRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSGDLEVTIEESDG 345 Query: 304 SKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDD--SLRSEPNMGQASYYYGLNNLFTGYT 361 ++R F P+SS+ MQRPG ++ +AG+ D S EP +A+ YGLNN FT Y Sbjct: 346 TQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYG 405 Query: 362 GIQFTDNNYLAGLLGVGINTSIGAFAVDVTHSRAEIPDDKTYQGQSYRVTWNKLFQDTGT 421 G+ +++ Y G+ G ++GA ++D+ + + + ++ G +R + K +T T Sbjct: 406 GLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNT 465 Query: 422 SFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQFTVSINQPLNIA 481 + ++ YRY+ Y ++A + SR K++ +I+Q + Sbjct: 466 NIAVSYYRYTNDGYFSFNEA--------------NTRNWDYNSRQKSEIQFNISQTI--- 508 Query: 482 YEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWG-SFSVNLQRSWNEDGEKDDAMYV 540 D SL+ SGS YW N+ +VG S WG +S+N Q S D D A+ + Sbjct: 509 -FDGVSLYASGSQQDYWGNNDKNRNISVGVS-GQQWGVGYSLNYQYSRYTDQNNDRALSL 566 Query: 541 SVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLNVNSSGNTENNLVNYSVNAGYSLD 600 ++S+P+E L R S + D H++ ++ S + L YSL+ Sbjct: 567 NLSIPLERWLPRSRVSYQMTS-----QKDRPTQHEMRLDGSLLDDGRL-------SYSLE 614 Query: 601 KNAGDLASVGGYLNYEXXXXXXXXXXXXXXDN-SQQYSISTDGGFVLHSGGLT---FTNN 656 ++ D + LN N S QY+ GG V+H G+T + N Sbjct: 615 QSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGN 674 Query: 657 SFSSNDTLVLINALGAKGARINN-SNNEIDRWGYAVTSSVSPYRENRVGLNIETLENDVE 715 +F+ LI+A GA G RI N D +GYAV ++ Y+ENR+ ++ L ++V+ Sbjct: 675 AFA------LIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVD 728 Query: 716 LKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEVYQGEVMIGS-MGQG 774 L+ T+ VP G++V RF + G ++ ++ NGK +PF A + S + +G Sbjct: 729 LEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEG 788 Query: 775 GQAFVRGIND-SGELIVRWYENNQTIDCKLHYQFP-AQPQT 813 G ++ GI+ S VRW N C+ + P ++P T Sbjct: 789 GILYLSGISSKSQSWTVRW-GNQADQQCQFAFSTPDSEPTT 828 >b3046 putative membrane protein (yqiG) {Escherichia coli K12-MG1655} Length = 821 Score = 276 bits (707), Expect = 3e-075 Identities = 224/811 (27%), Positives = 371/811 (45%), Gaps = 57/811 (7%) Query: 1 MEYDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATS-SLEIPFVDIGENSAA 59 +E++ + +++ ++ P G Y++ +N + T L++ +V I +N A Sbjct: 21 VEFNKDLIEAEDRENVNLSQFETDGQLPVGKYSLSTLINNKRTPIHLDLQWVLI-DNQTA 79 Query: 60 ACLTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQA 119 C+T + L L T ++ + C + K ++ FD L + PQA Sbjct: 80 VCVTPEQLTLLGFTDEFIEKT---QQNLIDGCYPIEKE-KQITTYFDKGKMQLSIFAPQA 135 Query: 120 YVLKSYGGYVDPSLWESGINAATLAYTLNAYHTSS-DNDNSDSVYGAFNSGINLGAWHFR 178 ++ + P LW GI A L Y L A H + DNS ++ +G+NLGAW R Sbjct: 136 WLKYKDANWTPPELWNHGIAGAFLDYNLYASHYAPHQGDNSQNISSYGQAGVNLGAWRLR 195 Query: 179 ARGNYNWTTDNG----SDFDFQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLY 234 Y+ + +NG ++ DF YL R IPA+ +++ +G T FDS + G+ L Sbjct: 196 TDYQYDQSFNNGKSQATNLDFPRIYLFRPIPAMNAKLTIGQYDTESSIFDSFHFSGISLK 255 Query: 235 SDSRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSEL 294 SD MLP L YAP I GVA +NAKVTV+Q+ IY+ VPPG F I ++ + G +L Sbjct: 256 SDENMLPPDLRGYAPQITGVAQTNAKVTVSQNNRIIYQENVPPGPFAITNLFNTLQG-QL 314 Query: 295 VVTIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGK---VIDDSLRSEPNMGQASYYY 351 V +EE DG + +S+ + R G R+ + GK V DSL+ +P + + Sbjct: 315 DVKVEEEDGRVTQWQVASNSIPYLTRKGQIRYTTAMGKPTSVGGDSLQ-QPFFWTGEFSW 373 Query: 352 GLNNLFTGYTGIQFTDNNYLAGLLGVGIN-TSIGAFAVDVTHSRAEIPDDKTYQGQSYRV 410 G N + Y G T+ +Y + GVG N S+G+ + DVT S A++ + G SYR Sbjct: 374 GWLNNVSLYGGSVLTNRDYQSLAAGVGFNLNSLGSLSFDVTRSDAQLHNQDKETGYSYRA 433 Query: 411 TWNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQF 470 ++K F+ TG+ A YR+S ++++ +++ + D N Y K + Sbjct: 434 NYSKRFESTGSQLTFAGYRFSDKNFVTMNEYI------------NDTNHYTNYQNEKESY 481 Query: 471 TVSINQPL-NIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWG-----SFSVNL 524 V+ NQ L ++ Y SL + YW A +S Y++ S+ G S S+ Sbjct: 482 IVTFNQYLESLRLNTYVSL----ARNTYWDA-SSNVNYSLSLSRDFDIGPLKNVSTSLTF 536 Query: 525 QR-SWNEDGEKDDAMYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLNVNSSGN 583 R +W ED + D +Y+++S+P G R S Q N D + SH + S + Sbjct: 537 SRINWEEDNQ--DQLYLNISIP----WGTSRTLS----YGMQRNQDNEISHTASWYDSSD 586 Query: 584 TENNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGG 643 N ++SV+A D+ AS+ + D+ + S +G Sbjct: 587 RNN---SWSVSASGDNDEFKDMKASLRASYQHNTENGRLYLSGTSQRDSYYSLNASWNGS 643 Query: 644 FVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDRWGYAVTSSVSPYRENRV 703 F G F + S S D+ +I+A G + +NN +R+G V SVS Y + Sbjct: 644 FTATRHGAAFHDYS-GSADSRFMIDADGTEDIPLNNKRAVTNRYGIGVIPSVSSYITTSL 702 Query: 704 GLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEVYQ 763 ++ L +V+++++ TT G++ + +T +G + I A+G P V Sbjct: 703 SVDTRNLPENVDIENSVITTTLTEGAIGYAKLDTRKGYQIIGVIRLADGSHPPLGISVKD 762 Query: 764 --GEVMIGSMGQGGQAFVRGINDSGELIVRW 792 +G + GG ++ GI D +L +RW Sbjct: 763 ETSHKELGLVADGGFVYLNGIQDDNKLALRW 793 >b0718 putative outer membrane protein (ybgQ) {Escherichia coli K12-MG1655} Length = 818 Score = 231 bits (588), Expect = 2e-061 Identities = 206/819 (25%), Positives = 374/819 (45%), Gaps = 57/819 (6%) Query: 1 MEYDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSS-LEIPFVDIGENSAA 59 +E++ + L + ID+ + PG Y V V VN S+ +I + G+ + Sbjct: 25 VEFNLNVLDKSMRDRIDISLLKEKGVIAPGEYFVSVAVNNNKISNGQKINWQKKGDKTIP 84 Query: 60 ACLTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQA 119 C+ + + +K P+ +L + + C+D + E FD ++Q L+++IPQA Sbjct: 85 -CINDSLVDKFGLK-PDIRQSL----PQIDRCIDFSSRPEML-FNFDQANQQLNISIPQA 137 Query: 120 YVLKSYGGYVDPSLWESGINAATLAYTLNAY-HTSSDNDNSDSVYGAFNSGINLGAWHFR 178 ++ + PS W+ G+ + Y L A + D +S ++ +GIN GAW R Sbjct: 138 WLAWHSENWAPPSTWKEGVAGVLMDYNLFASSYRPQDGSSSTNLNAYGTAGINAGAWRLR 197 Query: 179 ARGNYNWTTDNGSDFD----FQDRYLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLY 234 + N TD+ + D YL R +P + S++ +G+ + FD + G L Sbjct: 198 SDYQLN-KTDSEDNHDQSGGISRTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALA 256 Query: 235 SDSRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSEL 294 SD RMLP L YAP I G+A +NA VT++QSG IY+ VPPG F+IDD++ S G+ L Sbjct: 257 SDDRMLPWELRGYAPQISGIAQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGT-L 315 Query: 295 VVTIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSEPN--MGQASYYYG 352 V + E DG F +S + R G R+ +AG+ N +G Sbjct: 316 DVKVTEEDGRVNNFQVSAASTPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWG 375 Query: 353 LNNLFTGYTGIQFTDNNYLAGLLGVGINTS-IGAFAVDVTHSRAEIPDDKTYQGQSYRVT 411 + + + Y G+ +D++Y + +G+G N +GA + DVT + + + +G SYR Sbjct: 376 MLSNTSLYGGLLISDDDYHSAAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFN 435 Query: 412 WNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADEDKNTMQTYSRMKNQFT 471 ++K T ++ +LAAYR+S + + H +D + S +D+ K + Sbjct: 436 YSKQVDATNSTISLAAYRFSDRHF---HSYANYLDHKYNDSDAQDE---------KQTIS 483 Query: 472 VSINQPLNIAYEDYGSLFISGSWTYYWAANNSRT-EYNVGYSKSV-SWG--SFSVNLQRS 527 +S+ QP+ + + + +W W A+ S T G++ + W S S + + Sbjct: 484 LSVGQPITPLNLNLYANLLHQTW---WNADASTTANITAGFNVDIGDWRDISISTSFNTT 540 Query: 528 WNEDGEKDDAMYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLNVNSSGNTENN 587 ED ++D+ +Y+S+S+P N GG+ G+ N+ +T H+++ N + + N Sbjct: 541 HYEDKDRDNQIYLSISLPFGN--GGR---VGYDMQNSSHST----IHRMSWNDTLDERN- 590 Query: 588 LVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGGFVLH 647 ++ ++AG D+ G Y + D S S S G F Sbjct: 591 --SWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGTYAASDYS-SVSSSWSGSFTAT 647 Query: 648 SGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDRWGYAVTSSVSPYRENRVGLNI 707 G F S S+N+ ++++ G + + + + +G AV +S Y+ + V +N+ Sbjct: 648 QYGAAFHRRS-STNEPRLMVSTDGVADIPVQGNLDYTNHFGIAVVPLISSYQPSTVAVNM 706 Query: 708 ETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEVYQGE-- 765 L + V + G++ + G+ + I A+G+ P A++ Q + Sbjct: 707 NDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVNVIIRNASGQFPPLGADIRQDDSG 766 Query: 766 VMIGSMGQGGQAFVRGINDSGELIVRWYENNQTIDCKLH 804 + +G +G+ G A++ G+ ++ V W E + C +H Sbjct: 767 ISVGMVGEEGHAWLSGVAENQLFTVVWGEQS----CIIH 801 >b2338 putative outer membrane protein (yfcU) {Escherichia coli K12-MG1655} Length = 578 Score = 215 bits (547), Expect = 1e-056 Identities = 163/545 (29%), Positives = 265/545 (48%), Gaps = 48/545 (8%) Query: 1 MEYDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIGENSAA- 59 +++DS FL G + ID+KR++ PG YN++V +N Q + + GE+ + Sbjct: 33 IQFDSRFLELKGDTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDVSK 92 Query: 60 --ACLTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTIP 117 ACLT + +AQ +K+ + +G+ CL + E ++ D S L +++P Sbjct: 93 SYACLTPELVAQFGLKEDVAKNLQWSHDGK---CLKPGQ-LEGVEIKADLSQSALVISLP 148 Query: 118 QAYVLKSYGGYVDPSLWESGINAATLAYTLNAY--HTSSDNDNSDSVYGAFNSGINLGAW 175 QAY+ ++ + PS W+ GI+ Y++ A H + D+S+ + G G+NLG W Sbjct: 149 QAYLEYTWPDWDPPSRWDDGISGIIADYSITAQTRHEENGGDDSNEISGNGTVGVNLGPW 208 Query: 176 HFRA--RGNYNWTTDNGSDFDF-----------QDRYLQRDIPAIRSQIIMGDAYTTGET 222 RA + NY T N D +F Y R +P++++++ +G+ Y + Sbjct: 209 RMRADWQTNYQHTRSNDDDDEFGGDDTQKKWEWSRYYAWRALPSLKAKLALGEDYLNSDI 268 Query: 223 FDSVNVRGVRLYSDSRMLPSALASYAPTIRGVANSNAKVTVTQSGYKIYETTVPPGEFVI 282 FD N G + +D +MLP L YAP I GVA++ AKVTV+Q G IYET VP G F I Sbjct: 269 FDGFNYVGGSVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRI 328 Query: 283 DDISPSGFGSELVVTIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSEP 342 D+ S G+ L + IEE +G + + +S+ + RPG R+ G+ + E Sbjct: 329 QDLGDSVSGT-LHIRIEEQNGQVQEYDISTASMPYLTRPGQVRYKIMMGRPQEWGHHVEG 387 Query: 343 N-MGQASYYYGLNNLFTGYTGIQFTDNNYLAGLLGVGINTS-IGAFAVDVTHSRAEIPDD 400 A +G+ N ++ Y G D NY + LGVG + S GA A DVTHS ++ D Sbjct: 388 GFFSGAEASWGIANGWSLYGG-ALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKD 446 Query: 401 KTY-----QGQSYRVTWNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLIDDAKHLSADE 455 Y G S+RV+++K F + A YR+S ++++ + + L D Sbjct: 447 TAYGKGSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYL-----------DA 495 Query: 456 DKNTMQTYSRMKNQFTVSINQPLNIAYEDYG-SLFISGSWTYYWAANNSRTEYNVGYSKS 514 + M K +T + NQ + D G S++++ + YW +T YN+ S Sbjct: 496 SDSEMVRTGNDKEMYTATYNQ----NFRDAGVSVYLNYTRHTYW-DREEQTNYNIMLSHY 550 Query: 515 VSWGS 519 + GS Sbjct: 551 FNMGS 555 >b3216 putative outer membrane protein (yhcD) {Escherichia coli K12-MG1655} Length = 793 Score = 166 bits (419), Expect = 8e-042 Identities = 200/824 (24%), Positives = 335/824 (40%), Gaps = 92/824 (11%) Query: 1 MEYDSSFLMGTGASTIDVKRYAQGNPTPPGLYNVRVFVNGQATSSLEIPFVDIGENSAAA 60 +++D L G +++ PG Y++ V VNG+ ++ F + G+ Sbjct: 29 VDFDRETLKSLGVDPNISHYFSRSARFLPGEYSLIVSVNGEKKGNIATRFDENGD----I 84 Query: 61 CLTHKNLAQLHIKQPEQPVTLLAREGEEEDCLDLAKSYEKADVCFDGSDQFLDLTI-PQA 119 CL L Q +K P + E+ C D SY + + + LD+ + PQA Sbjct: 85 CLDQAFLQQAGLKIPSE---------EKNGCYDYILSYPGTTITPLPNQEALDIIVSPQA 135 Query: 120 YVLKSYGGYVDPSLWESGINAATLAYTLNAYHTSSDNDNSDSVYGAFNSGINLGAWHFRA 179 + +D + +G AA L Y+L + N +SD A GIN+ W R+ Sbjct: 136 IIPIG----LDLTNAATGGTAALLNYSLMSSRAEFSNGSSDYSQAALEGGININDWMLRS 191 Query: 180 RGNYNWTTDNGSDFDFQDR--YLQRDIPAIRSQIIMGDAYTTGETFDSVNVRGVRLYSDS 237 + + T F Q+ YLQR +++ + G+ + ++ G+ + D+ Sbjct: 192 ---HQFLTQTNGTFSNQNSSTYLQRTFTDLKTLMRAGEVNLNNSVLEGASIYGIEIAPDN 248 Query: 238 RMLPSALASYAPTIRGVAN-SNAKVTVTQSGYKIYETTVPPGEFVIDDISPSGFGSELVV 296 + S + G+AN S A+V + Q G I+ VP G F I D+ S+L V Sbjct: 249 ALQTSGSGVQ---VTGIANTSQARVEIRQQGVLIHSILVPAGAFTIPDVPVRNGNSDLNV 305 Query: 297 TIEEADGSKRTFTHPFSSVVQMQRPGVGRWDFSAGKVIDDSLRSEPNMGQASYYYGLNNL 356 T+ E DGS + P S++ + F+ G+V DD P + AS + L Sbjct: 306 TVVETDGSSHNYIVP-STLFNQHVESFQGYRFAIGRV-DDDYDESPWVISASSGWNLTR- 362 Query: 357 FTGYTGIQFTDNNYLAGLLGVGINTSIGAFAVDVTHSRAEIPDD--KTYQGQSYRVTWNK 414 ++ G NY A I +S+ S+ D + QGQ YR+ N Sbjct: 363 WSAMNGGVIVAENYQA----ASIRSSLVPLPDLTVSSQISTSQDTKDSLQGQKYRLDAN- 417 Query: 415 LFQDTGTSFNLAAYRYSTQDYLGLHDALVLID-DAKHLS-ADEDKNTMQTYSRMKNQFTV 472 Y+ LGL +L D + LS A +D T T K+ + + Sbjct: 418 ---------------YNLPFSLGLTTSLTRSDRHYRELSEAIDDDYTDPT----KSTYAL 458 Query: 473 SINQPLNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSVNLQR--SWNE 530 +N +I G ISG TY + +N + N+ ++K+ + SVN Q S +E Sbjct: 459 GLNWSNSI----LGGFNISGYKTYSYDGDNDSSNLNINWNKAFKHATVSVNWQHQLSASE 514 Query: 531 DGEKD-DAMYVSVSVPIENILGGKRKSSGFRNLNTQLNTDFDGSHQLNVNSSGNTENNLV 589 + E D D YV++S+P G N T D G + + Sbjct: 515 NNEDDGDLFYVNISIPF-----------GRSNTATLYTRHDDHKTHYGTGVMGVVSDEM- 562 Query: 590 NYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGGFVLHSG 649 +Y VNA D+ S+ G ++ +S+ Y+ + GG +H Sbjct: 563 SYYVNAERDHDERE---TSLNGSISSNLHYTQVSLAAGASGSDSRTYNGTMSGGIAVHDQ 619 Query: 650 GLTFTNNSFSSNDTLVLINA-LGAKGARINNSNNEI--DRWGYAVTSSVSPYRENRVGLN 706 G+TF + ++ NDT + G RI + + D G AV S+ P+R + V ++ Sbjct: 620 GVTF--SPWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGNAVIPSIQPWRTSGVEID 677 Query: 707 IETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIP--FAAEVYQG 764 +L +V++ + + G+V F R A+LNIT ++GK +P A E +G Sbjct: 678 TASLPKNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITLSDGKKLPRGVAIEDSEG 737 Query: 765 EVMIGSMGQGGQAFVRGINDSGELIVRWYENNQTIDCKLHYQFP 808 + S+ G F+ I L ++ ++ C++H FP Sbjct: 738 NYLTTSV-DDGVVFLNNIKPDMVLDIK----DEQQSCRIHLTFP 776 >b1505 putative outer membrane protein {Escherichia coli K12-MG1655} Length = 382 Score = 143 bits (361), Expect = 4e-035 Identities = 109/356 (30%), Positives = 173/356 (48%), Gaps = 26/356 (7%) Query: 463 YSRMKNQFTVSINQPLNIAYEDYGSLFISGSWTYYWAANNSRTEYNVGYSKSVSWGSFSV 522 YS+ + Q +SI+Q L +YG+ F S S YW N SR++ + + +V +G + Sbjct: 27 YSK-RGQEQISISQQLG----NYGTTFFSASRQSYW--NTSRSDQQISFGLNVPFGDITT 79 Query: 523 NLQRSWNED---GEKDDAMYVSVSVPIENILGGKRKSSGFRNLNTQ--LNTDFDGSHQLN 577 +L S++ + ++D + +++VP + + +S+ FRN N ++ D G N Sbjct: 80 SLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSA-FRNSNASYSMSNDLKGG-MTN 137 Query: 578 VNSSGNT---ENNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQ 634 ++ T +NNL NYSV G + N S LNY D+SQ Sbjct: 138 LSGVYGTLLPDNNL-NYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQ 196 Query: 635 QYSISTDGGFVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDRW-GYAVTS 693 Y GG + H+ G+TF DT+VL+ A GA +I N W GYA+ Sbjct: 197 IY-YGMSGGIIAHADGITFGQ---PLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAILP 252 Query: 694 SVSPYRENRVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGK 753 + YRENRV LN +L ++VEL T T +P G++ F G ++ + N K Sbjct: 253 FATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGN-K 311 Query: 754 SIPFAAEVYQGEVMIGS-MGQGGQAFVRGINDSGELIVRWYENNQTIDCKLHYQFP 808 S+PF A V GE GS + + GQ ++ G+ SG+L V W ++ + +C + Y+ P Sbjct: 312 SVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNS-NCIVEYKLP 366 >b2337 putative outer membrane protein {Escherichia coli K12-MG1655} Length = 298 Score = 55.5 bits (132), Expect = 1e-008 Identities = 49/212 (23%), Positives = 85/212 (40%), Gaps = 13/212 (6%) Query: 586 NNLVNYSVNAGYSLDKNAGDLASVGGYLNYEXXXXXXXXXXXXXXDNSQQYSISTDGGFV 645 ++ +Y +N G S DK+ SV GY +++ +S GG Sbjct: 31 DDATHYQLNIGTS-DKHT----SVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGAT 85 Query: 646 L--HSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEI--DRWGYAVTSSVSPYREN 701 L H G L T N T +LI+A G + + + + +G AV S V+ Y N Sbjct: 86 LTTHGGALHRTQNM---GGTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRN 142 Query: 702 RVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLNITAANGKSIPFAAEV 761 + +++ L + E + G++ +F G+ A+ + +G PF AEV Sbjct: 143 QAYIDLNKLPENAEATQSVVQATLTEGAIGYRKFAVISGQKAMAVLRLQDGSHPPFGAEV 202 Query: 762 -YQGEVMIGSMGQGGQAFVRGINDSGELIVRW 792 E +G + G ++ G+ + V W Sbjct: 203 KNDNEQTVGLVDDDGSVYLAGVKPGEHMSVFW 234 Query= Z0151 putative fimbrial chaperone protein (ecpD) {Escherichia coli O157:H7 EDL933} (243 letters) Score E Sequences producing significant alignments: (bits) Value b0140 probable pilin chaperone similar to PapD (ecpD) {Escherich... 297 4e-082 b2110 putative chaperone (yehC) {Escherichia coli K12-MG1655} 135 3e-033 b0531 putative chaperone (sfmC) {Escherichia coli K12-MG1655} 125 3e-030 b3143 putative chaperone (yraI) {Escherichia coli K12-MG1655} 119 2e-028 b0939 putative chaperone (ycbR) {Escherichia coli K12-MG1655} 118 3e-028 b0944 putative chaperone (ycbF) {Escherichia coli K12-MG1655} 117 7e-028 b4316 periplasmic chaperone, required for type 1 fimbriae (fimC)... 113 1e-026 b2336 putative chaperone (yfcS) {Escherichia coli K12-MG1655} 110 7e-026 b0717 putative chaperone (ybgP) {Escherichia coli K12-MG1655} 110 1e-025 b3047 putative membrane protein (yqiH) {Escherichia coli K12-MG1... 98 4e-022 b3215 putative chaperone (yhcA) {Escherichia coli K12-MG1655} 46 2e-006 >b0140 probable pilin chaperone similar to PapD (ecpD) {Escherichia coli K12-MG1655} Length = 246 Score = 297 bits (761), Expect = 4e-082 Identities = 149/245 (60%), Positives = 183/245 (74%), Gaps = 7/245 (2%) Query: 3 MFPLVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNW 62 MF K T + FV+ + S+ + ADI+ISGTR+IY +D+K VNVRLENKGN PLL+Q+W Sbjct: 1 MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVNVRLENKGNNPLLVQSW 60 Query: 63 LDTGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVP 122 LDTGDDNA+P I VPFTATPPVSR++ KRGQT+K+MYT +T+LPKDRESV+WFNVLEVP Sbjct: 61 LDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVP 120 Query: 123 PKPKDAE--ADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITW----KLNNAQLQANN 176 PKP DAE A+++LLQLAFRTRIKLFYRP GL+G P+EAP + W A L+ N Sbjct: 121 PKP-DAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPLALKWFWSGSEGKASLRVTN 179 Query: 177 PTPYYVSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFGGN 236 PTPYYVSF+ LE+ GK Y ++ M+ PFS V L G +S KV F AINDFGG Sbjct: 180 PTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVNGLNGKANSAKVHFYAINDFGGA 239 Query: 237 IDGSA 241 I+G+A Sbjct: 240 IEGNA 244 >b2110 putative chaperone (yehC) {Escherichia coli K12-MG1655} Length = 239 Score = 135 bits (339), Expect = 3e-033 Identities = 79/209 (37%), Positives = 118/209 (56%), Gaps = 7/209 (3%) Query: 7 VKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTG 66 +K +S L S +L PA A I+I GTRIIY A+ K+V V+L N+GNR L+Q W+D G Sbjct: 16 MKGLLSLLIFSMVL---PAHAGIVIYGTRIIYPAENKEVMVQLMNQGNRSSLLQAWIDDG 72 Query: 67 DDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPK 126 D + P +I+VPF TPPV+++ GQ VK+ LP ++ES+++ NVL++PP Sbjct: 73 DTSLPPEKIQVPFMLTPPVAKIGANSGQQVKIKIM-PNKLPTNKESIFYLNVLDIPPNSP 131 Query: 127 DAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSFNE 186 + E KN L+ A + RIKLFYRP+G+ K+ + L N + +V+ ++ Sbjct: 132 EQEG-KNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLVNRSGNGLVIKNDSANWVTISD 190 Query: 187 VKLESGGKTYNVNSSMVTPFSQASFGVTS 215 VK + N + M+ P S V S Sbjct: 191 VK--ANNVKVNYETIMIAPLESQSVNVKS 217 >b0531 putative chaperone (sfmC) {Escherichia coli K12-MG1655} Length = 230 Score = 125 bits (314), Expect = 3e-030 Identities = 81/233 (34%), Positives = 123/233 (52%), Gaps = 15/233 (6%) Query: 3 MFPLVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKG-NRPLLIQN 61 M +K + +F + ASA A I + TRIIY AD K V + N N L+ + Sbjct: 1 MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNS 60 Query: 62 WLDTGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEV 121 W++ + S F TPP+ EPK T++++YTG L DRES++W NV + Sbjct: 61 WIENSSGVKEKS-----FIITPPLFVSEPKSENTLRIIYTGPP-LAADRESLFWMNVKTI 114 Query: 122 PPKPKDAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYY 181 P K+A +N+LQLA +R+KLF RP LQ PAEAP + + + + +NP+P+Y Sbjct: 115 PSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFY 174 Query: 182 VSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFG 234 V+ V L+ G + + ++M P + LP V GK+ F+ +ND+G Sbjct: 175 VTL--VNLQVGSQ--KLGNAMAAPRVNSQI---PLPSGV-QGKLKFQTVNDYG 219 >b3143 putative chaperone (yraI) {Escherichia coli K12-MG1655} Length = 231 Score = 119 bits (298), Expect = 2e-028 Identities = 72/210 (34%), Positives = 118/210 (56%), Gaps = 15/210 (7%) Query: 29 IIISGTRIIYNADKKDVNVRLENKG-NRPLLIQNWLDTGDDNADPSQIKVPFTATPPVSR 87 I++ TR+IY+A +K+ + + NKG P L+Q+W+D D + + PF TPP+ R Sbjct: 26 IVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGKS-----RAPFIITPPLFR 80 Query: 88 VEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKNLLQLAFRTRIKLFY 147 +E +++++ T A LP+++ES+++ NV +P K K + + N L L F+TRIK+FY Sbjct: 81 LEAGDDSSLRIIKT-ADNLPENKESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFY 139 Query: 148 RPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSFNEVKLESGGKTYNVNSSMVTPFS 207 RP+ L+G +A + +K ++ L NPT YYV F + ++ T + + P Sbjct: 140 RPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKI--EYIAPGE 197 Query: 208 QASFGVTSLPGSVSSGK-VVFKAINDFGGN 236 LP S GK V + AIND+GG+ Sbjct: 198 H-----KQLPLPASGGKNVKWAAINDYGGS 222 >b0939 putative chaperone (ycbR) {Escherichia coli K12-MG1655} Length = 233 Score = 118 bits (296), Expect = 3e-028 Identities = 74/230 (32%), Positives = 128/230 (55%), Gaps = 16/230 (6%) Query: 6 LVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKG-NRPLLIQNWLD 64 +V +++A+ +S A A I ++ TR++Y+ ++ +++ + N + P LIQ+W+ Sbjct: 9 IVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVM 68 Query: 65 TGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPK 124 T D+ F TPP+ + P +++MY GA L KDRE++++ +V VP Sbjct: 69 TPDNKKSAD-----FIITPPLFVLNPANENLLRIMYIGAP-LAKDRETLFFTSVRAVPST 122 Query: 125 PKDAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSF 184 K E N L++A ++ IKLF+RP GL EAPAK+ + + +NPTPY+++ Sbjct: 123 TKRKEG--NTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL 180 Query: 185 NEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFG 234 ++K+ GGK V + M++PF + F SLP + V ++ IND+G Sbjct: 181 TDLKI--GGKV--VKNQMISPFDKYQF---SLPKGAKNSSVTYRTINDYG 223 >b0944 putative chaperone (ycbF) {Escherichia coli K12-MG1655} Length = 245 Score = 117 bits (293), Expect = 7e-028 Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 12/222 (5%) Query: 16 VSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLD--TGDDNADPS 73 V +LL + A +++ GTR I+ AD++ +++ L N LI + ++ T + S Sbjct: 24 VLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEAS 83 Query: 74 QIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKN 133 + P A PP+ ++P T++++ T + LP DRE+++ ++ VP + + Sbjct: 84 TVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVP----SGKVENQ 139 Query: 134 LLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSFNEVKLESGG 193 +++A R+ KLF+RP GL G+P EA ++ W N+ +Q NPTPYY+ N +++ G Sbjct: 140 SVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYI--NLIQVSVNG 197 Query: 194 KTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFGG 235 K + N +V P SQ TS +++ V ++AIND+GG Sbjct: 198 KALS-NVGVVPPKSQRQ---TSWCQAIAPCHVAWRAINDYGG 235 >b4316 periplasmic chaperone, required for type 1 fimbriae (fimC) {Escherichia coli K12-MG1655} Length = 241 Score = 113 bits (283), Expect = 1e-026 Identities = 70/222 (31%), Positives = 120/222 (54%), Gaps = 15/222 (6%) Query: 14 LFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKG-NRPLLIQNWLDTGDDNADP 72 L ++ + A A + + TR+IY A +K + + N N LIQ+W++ D D Sbjct: 23 LMFMAMMVAGRAEAGVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKDG 82 Query: 73 SQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADK 132 F TPP+ ++ K+ T++++ LP+DRES++W NV +P K ++ + Sbjct: 83 R-----FIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDK-SKLTE 136 Query: 133 NLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSFNEVKLESG 192 N LQLA +RIKL+YRP+ L P +A K+ ++ + L NPTPYY++ E L +G Sbjct: 137 NTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTE--LNAG 194 Query: 193 GKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFG 234 T + +++V P +++ + S GS + ++ IND+G Sbjct: 195 --TRVLENALVPPMGESTVKLPSDAGS----NITYRTINDYG 230 >b2336 putative chaperone (yfcS) {Escherichia coli K12-MG1655} Length = 250 Score = 110 bits (276), Expect = 7e-026 Identities = 79/239 (33%), Positives = 116/239 (48%), Gaps = 21/239 (8%) Query: 6 LVKKTVSALFVSTLLA--SAPAFADIIISGTRIIYNADKKDVNVRLENKGNR-PLLIQNW 62 L + A+ ++ LL+ S A A + TR+I+N K ++V L N + P L Q+W Sbjct: 5 LCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDKSISVTLRNNDPKLPYLAQSW 64 Query: 63 LDTGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVM-YTGATALPKDRESVYWFNVLEV 121 ++ N +I P T PPV R++ VKV LP DRES+++FNV E+ Sbjct: 65 IEDEKGN----KITSPLTVLPPVQRIDSMMNGQVKVQGMPDINKLPADRESMFYFNVREI 120 Query: 122 PPKPKDAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAP--AKITWKLNNAQLQANNPTP 179 PPK N LQ+A +TRIKLF+RP L+ ++P K+T + NNPTP Sbjct: 121 PPKSN----KPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKVTLTRSGQAFTVNNPTP 176 Query: 180 YYVSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKV-VFKAINDFGGNI 237 YYV + + G S +V T++P +V V V +NDFG + Sbjct: 177 YYVIISNASAQKNGNPAAGFSPLVIE------PKTTVPLNVKMDSVPVLTYVNDFGARM 229 >b0717 putative chaperone (ybgP) {Escherichia coli K12-MG1655} Length = 242 Score = 110 bits (274), Expect = 1e-025 Identities = 69/206 (33%), Positives = 114/206 (55%), Gaps = 16/206 (7%) Query: 34 TRIIYNADKKDVNVRLENKGNR-PLLIQNWLDTGDDNADPSQIKVPFTATPPVSRVEPKR 92 TRI++NA+ K ++R+EN+ ++ P L +W++ N + A PP+ R+EPK Sbjct: 27 TRIVFNANDKATSLRIENQSDKLPYLAYSWIE----NEKGEKSDALLVALPPIQRLEPKA 82 Query: 93 GQTVKVM-YTGATALPKDRESVYWFNVLEVPPKPKDAEADKNLLQLAFRTRIKLFYRPSG 151 V+V+ T LP DRE+++++N+ E+PP P D +D +LQ+A ++RIKLF+RP+ Sbjct: 83 TSQVRVVKQASTTQLPGDRETLFFYNMREIPPAP-DKSSDHAILQVAIQSRIKLFWRPAA 141 Query: 152 LQ---GEPAEAPAKITWKLNNAQLQANNPTPYYVSFNEVKLESGGKTYNVNSSMVTPFSQ 208 L+ GE E +++ + N QL NPT YY++ + G + MV PFS Sbjct: 142 LRKKAGEKVELQLQVSQQGN--QLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFST 199 Query: 209 ASFGVTSLPGSVSSGKVVFKAINDFG 234 V + GS S + ++D+G Sbjct: 200 ----VNTNTGSYSGSQFYLGYMDDYG 221 >b3047 putative membrane protein (yqiH) {Escherichia coli K12-MG1655} Length = 252 Score = 98.2 bits (243), Expect = 4e-022 Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 24/242 (9%) Query: 2 LMFPLVKKTVSALFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKG-NRPLLIQ 60 LM L K + A V S+ A+ II TRII N K ++L N+ N P L Q Sbjct: 3 LMRYLNTKNIIAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEALKLTNQSKNLPYLAQ 62 Query: 61 NWLDTGDDNADPSQIKVPFTATPPVSRVEPKRGQTVKVMYTGATA-LPKDRESVYWFNVL 119 W++ N I PP+ R+ P ++++ A LPKDRE++++FNV Sbjct: 63 TWIEDTKGNKSRDFI----VTVPPMVRLNPSEQIQIRMITQEKIAQLPKDRETLFYFNVR 118 Query: 120 EVPPKPKDAEADKNLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITW------KLNNAQLQ 173 E+PPK KN++Q+ + +KLF+RP ++ E +T+ + N+ ++ Sbjct: 119 EIPPKTD----KKNVMQVTMQHALKLFWRPKAIE---LEDDGVMTYEKVEIIRRNDGSIR 171 Query: 174 ANNPTPYYVSFNEVKLESGGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDF 233 NN PY+V+ + S MVTPFS A+ ++P + G INDF Sbjct: 172 FNNKMPYHVTLGYIGTNGVTMLPQTQSLMVTPFSYANTQFKNVPSTFQVG-----YINDF 226 Query: 234 GG 235 GG Sbjct: 227 GG 228 >b3215 putative chaperone (yhcA) {Escherichia coli K12-MG1655} Length = 224 Score = 46.2 bits (108), Expect = 2e-006 Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 19/223 (8%) Query: 15 FVSTLLASAPAFADIIISGTRIIYNADKK-DVNVRLENKGNRP-LLIQNWLDTGDDNADP 72 F + S A ++ T ++ +K+ + ++ ++N + P LL +D + N Sbjct: 7 FTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKNTDDHPSLLYTTIVDLPESNKS- 65 Query: 73 SQIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADK 132 + T PV RVE GQ +V + +P E + +PPK + Sbjct: 66 ----IRLIPTQPVIRVEA--GQVQQVRFLLQATVPLQSEELKRVTFEGIPPK----DDKS 115 Query: 133 NLLQLAFRTRIKLFYRPSGLQGEPAEAPAKITWKLNNAQLQANNPTPYYVSFN-EVKLES 191 + + ++ R + + P+ L E E + W+ N Q++ +NP+ Y V + K Sbjct: 116 SRVTVSIRQDLPVLIHPASLP-EERETWKFLEWRKNGDQIEISNPSNYVVRMTLQFKTLP 174 Query: 192 GGKTYNVNSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFG 234 GKT +N + P + + +T + + KV F + +G Sbjct: 175 SGKTGAINKTYFLPHTSTTTALT----NATDTKVEFYPASRYG 213 Query= Z0152 putative fimbrial protein (yadN) {Escherichia coli O157:H7 EDL933} (201 letters) Score E Sequences producing significant alignments: (bits) Value b0141 putative fimbrial-like protein (yadN) {Escherichia coli K1... 113 1e-026 >b0141 putative fimbrial-like protein (yadN) {Escherichia coli K12-MG1655} Length = 194 Score = 113 bits (282), Expect = 1e-026 Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 17/183 (9%) Query: 23 VDGGHIDFNGMVQSGTCKVGVVDTGMHSVTTDGVVTLDTANVTDTFAEVSATAVGLLPKE 82 +DGG ++ +G+V TC+ V D G DG++ L TA V + A V VG K Sbjct: 25 MDGGQLNISGLVVDNTCETRV-DGG----NKDGLILLQTATVGEIDAGVLNDTVGAKAKP 79 Query: 83 FMISVEC---DPGAPKNAELTMGSASYANTSGTLNNNMNITVNGIAPAQNVNIAVHNMKN 139 F I+V+C +P A++T GS + N+ GTLNN+M+I P+ VNIA+HN+ Sbjct: 80 FSITVDCSKANPNPGSTAKMTFGSVFFGNSKGTLNNDMSIN----NPSDGVNIALHNIDG 135 Query: 140 KAGAAEIKQVHMNNSSEVQELTLDAEGKGQ-YVFNASYVKAPNSPAVTAGHVTTNALYTV 198 IKQV +NN +V LDA K Y F ASYV+A TAG+V TN YT+ Sbjct: 136 ST----IKQVQINNPGDVYTKALDATTKSAVYDFKASYVRAVADQTATAGYVKTNTAYTI 191 Query: 199 AYK 201 Y+ Sbjct: 192 TYQ 194 Query= Z0153 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (folK) {Escherichia coli O157:H7 EDL933} (160 letters) Score E Sequences producing significant alignments: (bits) Value b0142 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (folK... 261 2e-071 >b0142 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (folK) [2.7.6.3] {Escherichia coli K12-MG1655} Length = 159 Score = 261 bits (666), Expect = 2e-071 Identities = 130/152 (85%), Positives = 133/152 (87%) Query: 1 MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNXXXX 60 MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLN Sbjct: 1 MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVA 60 Query: 61 XXXXXXXXXXXNHTQQIELQQGRVRKAERWGPRTLDLDIMLFGNETINTERLTVPHYDMK 120 NHTQ+IELQQGRVRKAERWGPRTLDLDIMLFGNE INTERLTVPHYDMK Sbjct: 61 LETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMK 120 Query: 121 NRGFMLWPLFEIAPELVFPDGETLREILTSLA 152 NRGFMLWPLFEIAPELVFPDGE LR+IL + A Sbjct: 121 NRGFMLWPLFEIAPELVFPDGEMLRQILHTRA 152 Query= Z0154 poly(A) polymerase I (pcnB) {Escherichia coli O157:H7 EDL933} (454 letters) Score E Sequences producing significant alignments: (bits) Value b0143 poly(A) polymerase I (pcnB) [2.7.7.19] {Escherichia coli K... 841 0.0 b3056 tRNA nucleotidyl transferase (cca) [2.7.7.25] {Escherichia... 59 5e-010 >b0143 poly(A) polymerase I (pcnB) [2.7.7.19] {Escherichia coli K12-MG1655} Length = 454 Score = 841 bits (2173), Expect = 0.0 Identities = 424/454 (93%), Positives = 424/454 (93%) Query: 1 MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEXWXXXXXXXX 60 MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYE W Sbjct: 1 MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRLNKAGYEAWLVGGGVRD 60 Query: 61 XXXXKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNV 120 KKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNV Sbjct: 61 LLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNV 120 Query: 121 SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGV 180 SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGV Sbjct: 121 SDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGV 180 Query: 181 IRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESL 240 IRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESL Sbjct: 181 IRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESL 240 Query: 241 KLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMR 300 KLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMR Sbjct: 241 KLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMR 300 Query: 301 VNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTR 360 VNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTR Sbjct: 301 VNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTR 360 Query: 361 DIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAP 420 DIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAP Sbjct: 361 DIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAP 420 Query: 421 PDQKGMLNELDEEXXXXXXXXXXXXXXXXXEGTA 454 PDQKGMLNELDEE EGTA Sbjct: 421 PDQKGMLNELDEEPSPRRRTRRPRKRAPRREGTA 454 >b3056 tRNA nucleotidyl transferase (cca) [2.7.7.25] {Escherichia coli K12-MG1655} Length = 412 Score = 59.3 bits (142), Expect = 5e-010 Identities = 60/230 (26%), Positives = 102/230 (44%), Gaps = 24/230 (10%) Query: 142 SIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRA 201 ++E+D +RRD TIN+L + Y G+ DL++ RL+ + + EDP+R+LR Sbjct: 83 TLEDDLKRRDLTINALAQDDNGEIIDPY-NGLGDLQN---RLLRHVSPAFGEDPLRVLRV 138 Query: 202 VRFAAK---LGMRISPETAEPIPRL--ATLLNDIPPARLFEESLKLLQAGYGYETYKLLC 256 RFAA+ LG RI+ ET + + A L + P R+++E+ L +++L Sbjct: 139 ARFAARYAHLGFRIADETLALMREMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLR 198 Query: 257 EYHLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL 316 + + LFP I F + I DT IH M ++ A + + Sbjct: 199 DCGALRVLFPEIDALFGVPAPAKWHPEI-------DTGIHTLMTLSMAAMLSPQVDVRFA 251 Query: 317 ETAQKIAQESGLT------YHDAFALAMNDVLDEACRSLAIPKRLTTLTR 360 + + GLT H A ++++ C+ L +P + L R Sbjct: 252 TLCHDLGK--GLTPPELWPRHHGHGPAGVKLVEQLCQRLRVPNEIRDLAR 299 Query= Z0155 putative tRNA synthetase (yadB) {Escherichia coli O157:H7 EDL933} (308 letters) Score E Sequences producing significant alignments: (bits) Value b0144 putative tRNA synthetase (yadB) {Escherichia coli K12-MG1655} 631 0.0 b2400 glutamate tRNA synthetase, catalytic subunit (gltX) {Esche... 139 2e-034 b0680 glutamine tRNA synthetase (glnS) [6.1.1.18] {Escherichia c... 49 6e-007 >b0144 putative tRNA synthetase (yadB) {Escherichia coli K12-MG1655} Length = 308 Score = 631 bits (1628), Expect = 0.0 Identities = 305/308 (99%), Positives = 306/308 (99%) Query: 1 MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARHGRWLVRIEDIDPP 60 MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARAR GRWLVRIEDIDPP Sbjct: 1 MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDIDPP 60 Query: 61 REVPGAAETILRQLEHYGLHWDGDVLWQSQRHHAYREALAWLHEQGLSYYCTCTRARIQS 120 REVPGAAETILRQLEHYGLHWDGDVLWQSQRH AYREALAWLHEQGLSYYCTCTRARIQS Sbjct: 61 REVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWLHEQGLSYYCTCTRARIQS 120 Query: 121 IGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF 180 IGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF Sbjct: 121 IGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFIIHRRDGLF 180 Query: 181 AYNLAVVVDDHFQGVSEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 240 AYNLAVVVDDHFQGV+EIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS Sbjct: 181 AYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLS 240 Query: 241 KQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVN 300 KQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVN Sbjct: 241 KQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFSVEQILQSAVKNWRLTAVPESAIVN 300 Query: 301 STFSNASC 308 STFSNASC Sbjct: 301 STFSNASC 308 >b2400 glutamate tRNA synthetase, catalytic subunit (gltX) {Escherichia coli K12-MG1655} Length = 471 Score = 139 bits (350), Expect = 2e-034 Identities = 100/300 (33%), Positives = 151/300 (50%), Gaps = 21/300 (7%) Query: 19 RFAPSPSGELHFGSLIAALGSYLQARARHGRWLVRIEDIDPPREVPGAAETILRQLEHYG 78 RFAPSP+G LH G AL S+L AR G +++RIED D R P A E I+ + Sbjct: 6 RFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDTDLERSTPEAIEAIMDGMNWLS 65 Query: 79 LHWDGDVLWQSQRHHAYREALAWLHEQGLSYYCTCTRARIQSI---------GGIYDGHC 129 L WD +Q++R Y + + E+G +Y C C++ R++++ YDG C Sbjct: 66 LEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSKERLEALREEQMAKGEKPRYDGRC 125 Query: 130 RVLH-HGPDNAAVRIRQQHP---VTQFTDQLRGIIHADEKLAREDFIIHRRDGLFAYNLA 185 R H H D+ +R +P F DQ+RG I + +D II R DG YN Sbjct: 126 RHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPIEFSNQ-ELDDLIIRRTDGSPTYNFC 184 Query: 186 VVVDDHFQGVSEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQGAKLSKQNHA 245 VVVDD ++ ++RG D I T RQI++ + VP Y H+ + G KLSK++ A Sbjct: 185 VVVDDWDMEITHVIRGEDHINNTPRQINILKALKAPVPVYAHVSMINGDDGKKLSKRHGA 244 Query: 246 PALPK-GDPRPVLIAALQFLGQQAEAHWQD--FSVEQILQSAVKNWRLTAVPESAIVNST 302 ++ + D + A L +L + +H F+ E++ +K + L AV +SA +T Sbjct: 245 VSVMQYRDDGYLPEALLNYLVRLGWSHGDQEIFTREEM----IKYFTLNAVSKSASAFNT 300 >b0680 glutamine tRNA synthetase (glnS) [6.1.1.18] {Escherichia coli K12-MG1655} Length = 554 Score = 48.5 bits (114), Expect = 6e-007 Identities = 30/105 (28%), Positives = 48/105 (45%) Query: 19 RFAPSPSGELHFGSLIAALGSYLQARARHGRWLVRIEDIDPPREVPGAAETILRQLEHYG 78 RF P P+G LH G + ++ A+ G+ +R +D +P +E E+I +E G Sbjct: 31 RFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLG 90 Query: 79 LHWDGDVLWQSQRHHAYREALAWLHEQGLSYYCTCTRARIQSIGG 123 HW G+V + S L +GL+Y T +I+ G Sbjct: 91 FHWSGNVRYSSDYFDQLHAYAIELINKGLAYVDELTPEQIREYRG 135 Query= Z0156 dnaK suppressor protein (dksA) {Escherichia coli O157:H7 EDL933} (151 letters) Score E Sequences producing significant alignments: (bits) Value b0145 dnaK suppressor protein (dksA) {Escherichia coli K12-MG1655} 271 1e-074 >b0145 dnaK suppressor protein (dksA) {Escherichia coli K12-MG1655} Length = 151 Score = 271 bits (694), Expect = 1e-074 Identities = 136/151 (90%), Positives = 136/151 (90%) Query: 1 MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVT 60 MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVT Sbjct: 1 MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVT 60 Query: 61 HMQDEAANFPDPVDRAAQEEEFSLELRNRDXXXXXXXXXXXXXXXVEDEDFGYCESCGVE 120 HMQDEAANFPDPVDRAAQEEEFSLELRNRD VEDEDFGYCESCGVE Sbjct: 61 HMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVE 120 Query: 121 IGIRRLEARPTADLCIDCKTLAEIREKQMAG 151 IGIRRLEARPTADLCIDCKTLAEIREKQMAG Sbjct: 121 IGIRRLEARPTADLCIDCKTLAEIREKQMAG 151 Query= Z0157 probable regulator for maltose metabolism (sfsA) {Escherichia coli O157:H7 EDL933} (234 letters) Score E Sequences producing significant alignments: (bits) Value b0146 probable regulator for maltose metabolism (sfsA) {Escheric... 468 e-133 >b0146 probable regulator for maltose metabolism (sfsA) {Escherichia coli K12-MG1655} Length = 234 Score = 468 bits (1203), Expect = e-133 Identities = 234/234 (100%), Positives = 234/234 (100%) Query: 1 MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTK 60 MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTK Sbjct: 1 MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGCATPGDTVWYSTSDNTK 60 Query: 61 RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI 120 RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI Sbjct: 61 RKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELSGYSSLKSEVKYGAERSRI 120 Query: 121 DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAV 180 DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAV Sbjct: 121 DFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKHLRELMSVAAEGQRAVIFFAV 180 Query: 181 LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL 234 LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL Sbjct: 181 LHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAEISAEGMALKKSLPVTL 234 Query= Z0158 orf, hypothetical protein (yadP) {Escherichia coli O157:H7 EDL933} (179 letters) Score E Sequences producing significant alignments: (bits) Value b0147 orf, hypothetical protein (yadP) {Escherichia coli K12-MG1... 362 e-102 >b0147 orf, hypothetical protein (yadP) {Escherichia coli K12-MG1655} Length = 179 Score = 362 bits (929), Expect = e-102 Identities = 176/179 (98%), Positives = 177/179 (98%) Query: 1 MPHMSDPQRLFFAIDLPAEIREQIIHWRATHFPLEAGRPVAADNLHLTLAFLGEVSAEKE 60 MPHMS+PQRLFFAIDLPAEIREQIIHWRATHFP EAGRPVAADNLHLTLAFLGEVSAEKE Sbjct: 1 MPHMSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHLTLAFLGEVSAEKE 60 Query: 61 KALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQ 120 KALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQ Sbjct: 61 KALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQLANMLRSQAARSGCFQ 120 Query: 121 SNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWVLTQ 179 SNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRW LTQ Sbjct: 121 SNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFARGRTRYTPLKRWALTQ 179 Query= Z0159 helicase, ATP-dependent (hrpB) {Escherichia coli O157:H7 EDL933} (824 letters) Score E Sequences producing significant alignments: (bits) Value b0148 helicase, ATP-dependent (hrpB) {Escherichia coli K12-MG1655} 1529 0.0 b1413 helicase, ATP-dependent (hrpA) {Escherichia coli K12-MG1655} 244 1e-065 b2576 ATP-dependent RNA helicase (srmB) {Escherichia coli K12-MG... 51 3e-007 >b0148 helicase, ATP-dependent (hrpB) {Escherichia coli K12-MG1655} Length = 824 Score = 1529 bits (3960), Expect = 0.0 Identities = 782/824 (94%), Positives = 786/824 (95%) Query: 1 MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDYAPQVLLSAPTGAGKSTWLPLQLLAHP 60 MLQCGAKNVNPLERFVSSLPVAAVLPELLTALD APQVLLSAPTGAGKSTWLPLQLLAHP Sbjct: 1 MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAHP 60 Query: 61 GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT 120 GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT Sbjct: 61 GINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLT 120 Query: 121 RMIQRDPELSGVGLVILDEFHERSXXXXXXXXXXXXXXXXXRDDLKLLIMSATLDNDRLQ 180 RMIQRDPELSGVGLVILDEFHERS RDDLKLLIMSATLDNDRLQ Sbjct: 121 RMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNDRLQ 180 Query: 181 QMLPEAPVVISEGRSFPVERRYLPLPTHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI 240 QMLPEAPVVISEGRSFPVERRYLPLP HQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI Sbjct: 181 QMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEI 240 Query: 241 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 300 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR Sbjct: 241 QRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR 300 Query: 301 LVVDCAQERVARFDPRTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLIAKEQAERAT 360 LVVDCAQERVARFDPRTGLTRLITQR+SQASMTQRAGRAGRLEPGI LHLIAKEQAERA Sbjct: 301 LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHLIAKEQAERAA 360 Query: 361 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLQMLGALDGERLS 420 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPP VNLLAAKRLLQMLGAL+GERLS Sbjct: 361 AQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRLLQMLGALEGERLS 420 Query: 421 AQGQKMAALGNDPRLAAMLVSAKSDDEXXXXXXXXXXLEEPPRMGNSDLGVAFSRNQPAW 480 AQGQKMAALGNDPRLAAMLVSAK+DDE LEEPPRMGNSDLGVAFSRNQPAW Sbjct: 421 AQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMGNSDLGVAFSRNQPAW 480 Query: 481 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDADDA 540 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDA+DA Sbjct: 481 QQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDA 540 Query: 541 LSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 600 LSRHEWLIAPLLLQGSASPDARILLAL VDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW Sbjct: 541 LSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW 600 Query: 601 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAGKWLP 660 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCA KWLP Sbjct: 601 RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLP 660 Query: 661 EYDWPAVDDESLLATLETWLLPHMAGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 720 EYDWPAVDDESLLA LETWLLPHM GVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA Sbjct: 661 EYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPA 720 Query: 721 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 780 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT Sbjct: 721 HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVPLVLELLSPAQRPLQIT 780 Query: 781 RDLGAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 824 RDL FWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS Sbjct: 781 RDLSDFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS 824 >b1413 helicase, ATP-dependent (hrpA) {Escherichia coli K12-MG1655} Length = 1281 Score = 244 bits (624), Expect = 1e-065 Identities = 153/441 (34%), Positives = 250/441 (56%), Gaps = 15/441 (3%) Query: 15 FVSSLPVAAVLPELLTALDYAPQVLLSAPTGAGKSTWLP-LQLLAHPGINGKIILLEPRR 73 + +LPV+ ++L A+ V+++ TG+GK+T LP + + GI G I +PRR Sbjct: 54 YPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPRR 113 Query: 74 LAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVG 133 LAAR VA R+AE L +PG +GY++R + V NT ++++T+G+L IQ+D L Sbjct: 114 LAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQYD 173 Query: 134 LVILDEFHERSXXXXXXXXXXXXXXXXXRDDLKLLIMSATLDNDRLQQMLPEAPVVISEG 193 +I+DE HERS R DLK++I SAT+D +R + AP++ G Sbjct: 174 TIIIDEAHERSLNIDFLLGYLKELLPR-RPDLKIIITSATIDPERFSRHFNNAPIIEVSG 232 Query: 194 RSFPVERRYLPL-----PTHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLA 248 R++PVE RY P+ T + A+ A E+ ++ G +L+F+ G EI+ + L Sbjct: 233 RTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALN 292 Query: 249 SRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQE 308 + PLY LS N ++ + + G R++VLATN+AETSLT+ GI+ V+D Sbjct: 293 KLNLRHTEILPLYARLS-NSEQNRVFQSHSG-RRIVLATNVAETSLTVPGIKYVIDPGTA 350 Query: 309 RVARFDPRTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLIAKEQAERATAQSEPEIL 368 R++R+ RT + RL + ISQAS QR GR GR+ GIC+ L +++ ++PEIL Sbjct: 351 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEIL 410 Query: 369 QSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRLLQMLGALDGE------RLSAQ 422 +++L+ +++++ G D A +++ P N+ RLL+ LGA+ + +L+ Sbjct: 411 RTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPL 470 Query: 423 GQKMAALGNDPRLAAMLVSAK 443 G++++ L DPRLA M++ A+ Sbjct: 471 GRQLSQLPVDPRLARMVLEAQ 491 >b2576 ATP-dependent RNA helicase (srmB) {Escherichia coli K12-MG1655} Length = 444 Score = 51.2 bits (121), Expect = 3e-007 Identities = 92/340 (27%), Positives = 134/340 (39%), Gaps = 46/340 (13%) Query: 22 AAVLPELLTALDYAPQVLLSAPTGAGKSTWLPLQLLAH-------PGINGKIILLEPRRL 74 AA +P L D VL SAPTG GK+ L L H +I++L P R Sbjct: 32 AAAIPPALDGRD----VLGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRE 87 Query: 75 AARNVAQRLAELLNEKPGDT------VGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDP- 127 A V+ EL D V Y A+ N + V T G L + I+ + Sbjct: 88 LAMQVSDHARELAKHTHLDIATITGGVAYMNHAE-VFSENQDIVVATTGRLLQYIKEENF 146 Query: 128 ELSGVGLVILDEFHERSXXXXXXXXXXXXXXXXXRDDLKLLIMSATLDNDRLQ---QMLP 184 + V +ILDE R + L+ SATL+ D +Q + L Sbjct: 147 DCRAVETLILDEADRMLDMGFAQDIEHIAGETRWRK--QTLLFSATLEGDAIQDFAERLL 204 Query: 185 EAPVVISEGRSFPVERRYLPLPTHQRFDD---AVAVATAEMLRQESGSLLLFLPGVGEIQ 241 E PV +S S R + R DD A+ + + E+ ++F V + + Sbjct: 205 EDPVEVSANPS--TRERKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVF---VRKRE 259 Query: 242 RVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRL 301 RV E + + C L G + + +AI +G V++AT++A + I + Sbjct: 260 RVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDV-- 317 Query: 302 VVDCAQERVARFD-PRTGLTRLITQRISQASMTQRAGRAG 340 V FD PR+G T L RI + T RAGR G Sbjct: 318 ------SHVFNFDMPRSGDTYL--HRIGR---TARAGRKG 346 Query= Z0160 peptidoglycan synthetase penicillin-binding protein 1B (mrcB) {Escherichia coli O157:H7 EDL933} (844 letters) Score E Sequences producing significant alignments: (bits) Value b0149 peptidoglycan synthetase; penicillin-binding protein 1B (m... 1434 0.0 b3396 peptidoglycan synthetase; penicillin-binding protein 1A (m... 130 5e-031 b2519 putative peptidoglycan enzyme (pbpC) {Escherichia coli K12... 117 4e-027 b3208 putative peptidoglycan enzyme (mtgA) {Escherichia coli K12... 77 4e-015 >b0149 peptidoglycan synthetase; penicillin-binding protein 1B (mrcB) {Escherichia coli K12-MG1655} Length = 844 Score = 1434 bits (3713), Expect = 0.0 Identities = 739/844 (87%), Positives = 741/844 (87%) Query: 1 MAGNDREPIGRKGKPTRPVKQKVSRRRXXXXXXXXXXXXXXXXXPMXXXXXXXXXXXXXX 60 MAGNDREPIGRKGKPTRPVKQKVSRRR PM Sbjct: 1 MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEEPMPRKGKGKGKGRKPR 60 Query: 61 XXXXXXXXXXXXAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTIS 120 AIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTIS Sbjct: 61 GKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQLPAAVYGRMVNLEPDMTIS 120 Query: 121 KNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHL 180 KNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHL Sbjct: 121 KNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFDFPDSKEGQVRARLTFDGDHL 180 Query: 181 ATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH 240 ATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH Sbjct: 181 ATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEH 240 Query: 241 DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR 300 DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR Sbjct: 241 DGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDAR 300 Query: 301 YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY 360 YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY Sbjct: 301 YSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIY 360 Query: 361 NPWRNPKXXXXXXXXXXXXXXXXXXXXXXXYDMLSARPLGVQPRGGVISPQPAFMQLVRQ 420 NPWRNPK YDMLSARPLGVQPRGGVISPQPAFMQLVRQ Sbjct: 361 NPWRNPKLALERRNLVLRLLQQQQIIDQELYDMLSARPLGVQPRGGVISPQPAFMQLVRQ 420 Query: 421 ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRF 480 ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRF Sbjct: 421 ELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKKQRKLSDLETAIVVVDRF 480 Query: 481 SGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIAL 540 SGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIAL Sbjct: 481 SGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIAL 540 Query: 541 RQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPK 600 RQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVT+TWIKLGVPK Sbjct: 541 RQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALGLPAVTETWIKLGVPK 600 Query: 601 DQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAER 660 DQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAER Sbjct: 601 DQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAER 660 Query: 661 AVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTI 720 AVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTI Sbjct: 661 AVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTI 720 Query: 721 TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGM 780 TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGM Sbjct: 721 TWVGRDNNQPTKLYGASGAMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGM 780 Query: 781 RVLPVWTSDPXXXXXXXXXXXXXXGNPFXXXXXXXXXXXXXXXXXXXXXXXGVAGWIKDM 840 R+LPVWTSDP GNPF GVAGWIKDM Sbjct: 781 RILPVWTSDPQSLCQQSEMQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDM 840 Query: 841 FGSN 844 FGSN Sbjct: 841 FGSN 844 >b3396 peptidoglycan synthetase; penicillin-binding protein 1A (mrcA) {Escherichia coli K12-MG1655} Length = 858 Score = 130 bits (326), Expect = 5e-031 Identities = 79/251 (31%), Positives = 125/251 (49%), Gaps = 6/251 (2%) Query: 204 MISSPNGEQRLFVPRSGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQ 263 +I+ ++R+ V P +V +ATED FYEH G+ I RA L +G Q Sbjct: 65 LIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIFRAASVALFSGHASQ 124 Query: 264 GASTLTQQLVKNLFLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNE 323 GAST+TQQL +N FLS ER+ RK E ++A+ ++ +KD ILELY+N++YLG Sbjct: 125 GASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEILELYLNKIYLGY----R 180 Query: 324 IRGFPLASLYYFGRPVEELSLDQQALLVGMVKGASIYNPWRNPKXXXXXXXXXXXXXXXX 383 G A+ YFG+ V++L+L++ A++ G+ K S +NP + Sbjct: 181 AYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRAVARRNVVLSRMLDE 240 Query: 384 XXXXXXXYDMLSARPLGVQPRGGVIS-PQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTF 442 +D + I+ P ++VRQE+ + G+ + G +I+TT Sbjct: 241 GYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYE-DGYRIYTTI 299 Query: 443 DSVAQDAAEKA 453 Q AA++A Sbjct: 300 TRKVQQAAQQA 310 Score = 82.4 bits (202), Expect = 1e-016 Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 5/193 (2%) Query: 466 KLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPK 525 ++ ++ +A+V ++ +G V A+VGG + + +NRA QA R +GS KP Y A+ K Sbjct: 429 QVPEVNSALVSINPQNGAVMALVGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMD--K 486 Query: 526 IYRLNTWIADAPIALRQPN-GQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMAL 584 L + + D PI+ + G W P+N +Y+ G + L L +S NV V A+ Sbjct: 487 GLTLASMLNDVPISRWDASAGSDWQPKNSPPQYA--GPIRLRQGLGQSKNVVMVRAMRAM 544 Query: 585 GLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVI 644 G+ + + G P + ++ LG+ + TP++VA+ + +A+GG + + Sbjct: 545 GVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLVDPWFISKIE 604 Query: 645 AEDGKVLYQSFPQ 657 + G V++++ P+ Sbjct: 605 NDQGGVIFEAKPK 617 Score = 48.9 bits (115), Expect = 1e-006 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 20/119 (16%) Query: 680 RGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQ---------- 729 +GTG + G + GKTGTTN++ D WF+G VT W+G D+++ Sbjct: 706 QGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRNLGHTTASG 765 Query: 730 --PTKLYGASG-------AMSIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGG 779 ++ G G A Y + + P L PP I + +D + +GG Sbjct: 766 AIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQ-PLTPPPGIVTVNIDRSTGQLANGG 823 >b2519 putative peptidoglycan enzyme (pbpC) {Escherichia coli K12-MG1655} Length = 770 Score = 117 bits (292), Expect = 4e-027 Identities = 132/514 (25%), Positives = 211/514 (41%), Gaps = 56/514 (10%) Query: 226 VDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYW 285 ++ L+ EDR F++H G++ +S+ RA +LT+GR + G STLT Q V L +++ Sbjct: 77 LEALINYEDRWFWKHPGVNPFSVARAAWQDLTSGRVISGGSTLTMQ-VARLLDPHPKTFG 135 Query: 286 RKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLD 345 K + + AL ++ SK IL LY+N G ++G AS Y G+ LS Sbjct: 136 GKIRQLWRALQLEWHLSKREILTLYLNRAPFG----GTLQGIGAASWAYLGKSPANLSYS 191 Query: 346 QQALLVGMVKGASIYNPWRNPKXXXXXXXXXXXXXXXXXXXXXXXYDMLSARPLGVQPRG 405 + A+L + + S P R P+ P+ + PR Sbjct: 192 EAAMLAVLPQAPSRLRPDRWPERAEAARNKVLERMAVQGVWSREQVKESREEPIWLAPRQ 251 Query: 406 GVISPQ--PAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAAEKAAVEGIPALKK 463 PQ P F +++ LG D KI TT D+ Q E+ A L Sbjct: 252 ---MPQLAPLFSRMM-------LGKSKSD----KITTTLDAGLQRRLEELAQNWKGRLPP 297 Query: 464 QRKLSDLETAIVVVDRFSGEVRAMVGG---SEPQFAGYNRAMQARRSIGSLAKPATYLTA 520 + L A++VVD VR VG ++ G+ + + RS GS+ KP Y A Sbjct: 298 RSSL-----AMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLA 352 Query: 521 LSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNL 580 L + I+ + + D P + G + P N D + G + + +AL RS+N+P V + Sbjct: 353 LDEGLIHPASL-LQDVP----RRTGD-YRPGNFDSGF--HGPISMSEALVRSLNLPAVQV 404 Query: 581 GMALGLPAVTDTWIKLGVP---KDQLHPVPAMLLGALNLTPIEVAQAFQTIASGGNRAPL 637 A G +G+P + P +++LG ++A A+ A G L Sbjct: 405 LEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARHGKAGKL 464 Query: 638 SALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNL-HLA 696 L P ER + + A W +++++ + P + LA Sbjct: 465 R------------LQPDDPLLERPLMSSGA---AWIIRRIMADEAQPLPDSALPRVAPLA 509 Query: 697 GKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQP 730 KTGT+ D W G++ V W GR + P Sbjct: 510 WKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTP 543 >b3208 putative peptidoglycan enzyme (mtgA) {Escherichia coli K12-MG1655} Length = 242 Score = 77.4 bits (189), Expect = 4e-015 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 4/126 (3%) Query: 229 LLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSERSYWRKA 288 ++A ED+ F EH G + SI +A+ N ++GAST++QQ KNLFL RS+ RK Sbjct: 80 VIAAEDQKFPEHWGFDVASIEKALAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKG 139 Query: 289 NEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPVEELSLDQQA 348 EA + L ++ +SK RIL +Y+N + + GD + G A+ YF +P +L+ + A Sbjct: 140 LEAGLTLGIETVWSKKRILTVYLN---IAEFGDG-VFGVEAAAQRYFHKPASKLTRSEAA 195 Query: 349 LLVGMV 354 LL ++ Sbjct: 196 LLAAVL 201 Query= Z0161 outer membrane protein receptor for ferrichrome, colicin (fhuA) {Escherichia coli O157:H7 EDL933} (747 letters) Score E Sequences producing significant alignments: (bits) Value b0150 outer membrane protein receptor for ferrichrome, colicin M... 1395 0.0 b0805 putative outer membrane receptor for iron transport {Esche... 110 3e-025 b1102 outer membrane receptor for ferric iron uptake (fhuE) {Esc... 79 8e-016 b2155 outer membrane receptor for iron-regulated colicin I recep... 57 4e-009 b3966 outer membrane receptor for transport of vitamin B12, E co... 56 1e-008 b1451 putative outer membrane receptor for iron transport {Esche... 56 1e-008 b0584 outer membrane receptor for ferric enterobactin (enteroche... 51 3e-007 >b0150 outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 (fhuA) {Escherichia coli K12-MG1655} Length = 747 Score = 1395 bits (3610), Expect = 0.0 Identities = 697/747 (93%), Positives = 699/747 (93%) Query: 1 MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVELKEDTITVTAAPAPQESAWGPAAT 60 MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVE KEDTITVTAAPAPQESAWGPAAT Sbjct: 1 MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITVTAAPAPQESAWGPAAT 60 Query: 61 IAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTY 120 IAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTY Sbjct: 61 IAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTY 120 Query: 121 DHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGG 180 DHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGG Sbjct: 121 DHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGG 180 Query: 181 LLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDALDDDGVYSYRLTGLARSANAQQKG 240 LLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSD+LDDDGVYSYRLTGLARSANAQQKG Sbjct: 181 LLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLDDDGVYSYRLTGLARSANAQQKG 240 Query: 241 SEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN 300 SEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN Sbjct: 241 SEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFN 300 Query: 301 EGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSK 360 EGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSK Sbjct: 301 EGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSK 360 Query: 361 QCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDI 420 QCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDI Sbjct: 361 QCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDI 420 Query: 421 NAWFGYDDSVPLLDLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLV 480 NAWFGYDDSVPLL+LYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLV Sbjct: 421 NAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLV 480 Query: 481 TLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTXXXXXXXXXXXXXQVG 540 TLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVT QVG Sbjct: 481 TLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESFEPSSQVG 540 Query: 541 KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRA 600 KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRA Sbjct: 541 KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRA 600 Query: 601 RGVEIEAKAALSASVNVVGSXXXXXXXXXXXXXXKGNTPAQVPKHMASLWADYTFFDXXX 660 RGVEIEAKAALSASVNVVGS KGNTPAQVPKHMASLWADYTFFD Sbjct: 601 RGVEIEAKAALSASVNVVGSYTYTDAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPL 660 Query: 661 XXXXXXXXXXXXXXXXXDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE 720 DPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE Sbjct: 661 SGLTLGTGGRYTGSSYGDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDRE 720 Query: 721 YVASCFNTYGCFWGAERQVVATATFRF 747 YVASCFNTYGCFWGAERQVVATATFRF Sbjct: 721 YVASCFNTYGCFWGAERQVVATATFRF 747 >b0805 putative outer membrane receptor for iron transport {Escherichia coli K12-MG1655} Length = 760 Score = 110 bits (275), Expect = 3e-025 Identities = 165/796 (20%), Positives = 293/796 (36%), Gaps = 91/796 (11%) Query: 3 RSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVELKEDTITVTAAPAPQESAWGPAATIA 62 R+ A+ HSL A + A +DT+ V A+ ++ Sbjct: 5 RNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTLVVEAS----------TPSLY 54 Query: 63 ARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSV---GTRGASNT 119 A Q + K P+ ++++V++ + + ++ +AL PGV G G S T Sbjct: 55 APQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTT 114 Query: 120 YDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPG 179 D + +RG S + Y++G++ G+ D + E+ E+++GP YG+S+P Sbjct: 115 GDAIYMRG---ADTSNSIYIDGIRDIGSVSRDT----FNTEQVEVIKGPSGTDYGRSAPT 167 Query: 180 GLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDALDDDGVYSYRLTGLARSANAQQK 239 G +NM+SK+P + + G+ + D + + D + G ++ +A + Sbjct: 168 GSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMG-EKTHDAGRD 226 Query: 240 GSEEQRYAIAP--AFTWRPDDKTNFTFLSYFQNE------PETGYYGWLPKEGTVEPLPN 291 + +RY +AP AF ++ +L Q+ P G G+ L + Sbjct: 227 KVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSAGTAALNH 286 Query: 292 GKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVC 351 ++ T G ++ F+H+ ND T+R R++ K G Sbjct: 287 SGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGA 346 Query: 352 SDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGV 411 S+ S +R D + + T L S F TG I H + TGV Sbjct: 347 SNITQPTSDV--------NSWTWSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGV 398 Query: 412 DFMRMRNDINAWFGYDD-SVPLLDLYNPVNTDFDFNAKDPANSGPYRILNKQKQT-GVYV 469 +F R + +G + ++P +++Y+P D + +G N Q T +Y Sbjct: 399 EFTR---ETQTNYGVNPVTLPAVNIYHP---DSSIHPGGLTRNGAN--ANGQTDTFAIYA 450 Query: 470 QDQAQWDKVLVTLGG-RYD--WADQESLNRVAG-------------------TTD-KRDD 506 D Q + GG R D + +S G T D + Sbjct: 451 FDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPTGVAKGSPVTTVDTAKSG 510 Query: 507 KQFTWRGGVNY-LFDNG---VTXXXXXXXXXXXXXQVGKDGN-------IFAPSKGKQYE 555 W+ G Y L +NG + + + G+ F P K E Sbjct: 511 NLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSE 570 Query: 556 VGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASV 615 +G K+ D+ +++T A++ N + + +G++ + G+ R G EI ++ + Sbjct: 571 IGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTY--SQYGKKRVEGYEISVAGNITPAW 628 Query: 616 NVVGSXXXXXXXXXXXXXXKGNTPAQV---PKHMASLWADYTFFDXXXXXXXXXXXXXXX 672 V+G + + + P+H +LW+ Y D Sbjct: 629 QVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGARYIGSMH 688 Query: 673 XXXXXDPANSFKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNT-YGC 731 Y V DA + Y + R + L+V NLFD +YVAS + Y Sbjct: 689 KGSDGAVGTPAFTEGYWVADAKLGYRVNR----NLDFQLNVYNLFDTDYVASINKSGYRY 744 Query: 732 FWGAERQVVATATFRF 747 G R + TA F Sbjct: 745 HPGEPRTFLLTANMHF 760 >b1102 outer membrane receptor for ferric iron uptake (fhuE) {Escherichia coli K12-MG1655} Length = 729 Score = 79.3 bits (194), Expect = 8e-016 Identities = 151/757 (19%), Positives = 270/757 (35%), Gaps = 73/757 (9%) Query: 16 IAVVVATAVSGMSVYAQAAVELKEDTITVTAAPAPQESAWGPAATIAARQSATGTKTDTP 75 +A +A A+ + +A A E E I +A AP + + T ++ GTK Sbjct: 21 LAGCIALALLPSAAFAAPATE--ETVIVEGSATAPDDGENDYSVT----STSAGTKMQMT 74 Query: 76 IQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQ 135 + +PQS+++V+ + M Q +++ E + T G+S + + RGF + Sbjct: 75 QRDIPQSVTIVSQQRMEDQQLQTLGEVMENTLGISKSQADSDRALYYS--RGFQIDNYMV 132 Query: 136 NNYLNGLKLQGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLK 195 + + + N DA+ D + ER E++RG ++ G +P +NMV K T+ K Sbjct: 133 DGIPTYFESRWNL-GDALSDMALFERVEVVRGATGLMTGTGNPSAAINMVRKHATSREFK 191 Query: 196 -EVQFKAGTDSLFQTGFDFSDALDDDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTW 254 +V + G+ + + D L +DG R+ G Q S RY F Sbjct: 192 GDVSAEYGSWNKERYVADLQSPLTEDGKIRARIVG-----GYQNNDSWLDRYNSEKTFFS 246 Query: 255 R--PDDKTNFTFLS----YFQNEPETGYYGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTY 308 D + T LS Y + + + +G LP+ T + R + + A N+ Sbjct: 247 GIVDADLGDLTTLSAGYEYQRIDVNSPTWGGLPRWNTDGSSNSYDRARSTAPDWAYND-- 304 Query: 309 SRNEKMVGYSFDHEFNDTFTVRQNLRFAENKTSQNSVYGYGVCSDPANAYSKQCAALAPA 368 + V + +F DT+ N +E + +Y +AY + + Sbjct: 305 -KEINKVFMTLKQQFADTWQATLNATHSEVEFDSKMMY--------VDAYVNKADGMLVG 355 Query: 369 DKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDID-----HTLLTGVDFMRMRND-INA 422 +Y V + FA G + H L+ G + + N ++ Sbjct: 356 PYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYELFGRQHNLMFGGSYSKQNNRYFSS 415 Query: 423 WFG-YDDSVPLLDLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYVQDQAQWDKVLVT 481 W + D + +N D++ + A + + T V + D + Sbjct: 416 WANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTTHMKSLYAATRVTLADPLH-----LI 470 Query: 482 LGGRY-DWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTXXXXXXXXXXXXXQVG 540 LG RY +W RV T + T G+ + ++ + Sbjct: 471 LGARYTNW-------RVDTLTYSMEKNHTTPYAGLVFDINDNWSTYASYTSIFQPQNDRD 523 Query: 541 KDGNIFAPSKGKQYEVGVKYVPEDRPIVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIR- 599 G AP G YE+G+K + + T A++ + + N +A G+ GE Sbjct: 524 SSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDN--VAQSTGTPIPGSNGETAY 581 Query: 600 -------ARGVEIEAKAALSASVNVVGSXXXXXXXXXXXXXXKGNTPAQVPKHMASLWAD 652 ++GVE E A++ + + N P K S Sbjct: 582 KAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVNPNLPRTTVKMFTSYRLP 641 Query: 653 YTFFDXXXXXXXXXXXXXXXXXXXXDPANSFKV--GSYTVVDALVRYDLARVGMAGSNVA 710 P +F+ GSY +VD RY + + ++ Sbjct: 642 VM---PELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLFTRYQVTK----NFSLQ 694 Query: 711 LHVNNLFDREYVASCFNTYGCFWGAERQVVATATFRF 747 +VNNLFD+ Y + + +G R T T++F Sbjct: 695 GNVNNLFDKTYDTNVEGS--IVYGTPRNFSITGTYQF 729 >b2155 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product (cirA) {Escherichia coli K12-MG1655} Length = 663 Score = 57.0 bits (136), Expect = 4e-009 Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 19/132 (14%) Query: 68 TGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVS----------VGTRGAS 117 T + + ++ P SISV+T E++ +++K+ L PGV V RG Sbjct: 36 TASSVEQNLKDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLD 95 Query: 118 NTYDHLIIRGFAAEGQSQNNYLNGLKLQGNF-YNDAVIDPYMLERAEIMRGPVSVLYGKS 176 ++Y +++ G + N N + +F N +D +ER E++RGP+S LYG Sbjct: 96 SSYTLILVDG------KRVNSRNAVFRHNDFDLNWIPVDS--IERIEVVRGPMSSLYGSD 147 Query: 177 SPGGLLNMVSKR 188 + GG++N+++K+ Sbjct: 148 ALGGVVNIITKK 159 >b3966 outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23 (btuB) {Escherichia coli K12-MG1655} Length = 614 Score = 55.8 bits (133), Expect = 1e-008 Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 34/197 (17%) Query: 13 LRKIAVVVATAVSGMSVYAQAAVELKEDTITVTAAPAPQESAWGPAATIAARQSATGTKT 72 ++K +++ A +V+ S +AQ + DT+ VTA Q P +T+ A Sbjct: 2 IKKASLLTACSVTAFSAWAQ---DTSPDTLVVTANRFEQ-----PRSTVLA--------- 44 Query: 73 DTPIQKVPQSISVVTAEEMALHQPKSVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEG 132 +VVT +++ Q SV + L PGV + G S + IRG A Sbjct: 45 ---------PTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASH 95 Query: 133 QSQNNYLNGLKLQ-GNFYNDAVIDPY---MLERAEIMRGPVSVLYGKSSPGGLLNMVSKR 188 ++G++L A + + +++R E +RGP S +YG + GG++N+++ R Sbjct: 96 VLV--LIDGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTR 153 Query: 189 PTTEPLKEVQFKAGTDS 205 EP E+ G++S Sbjct: 154 --DEPGTEISAGWGSNS 168 >b1451 putative outer membrane receptor for iron transport {Escherichia coli K12-MG1655} Length = 700 Score = 55.8 bits (133), Expect = 1e-008 Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 37/215 (17%) Query: 15 KIAVVVATAVSGMSVYAQAAVELKEDTITVTAAPAPQESAWGPAATIAARQSATGTKTDT 74 KI V T + + V + E T+ V+AAP ++ DT Sbjct: 2 KIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQ------------------VVSELDT 43 Query: 75 PIQKVPQSISVVTAEEMALHQPK-SVKEALSYTPGVSVGTRGASNTYDHLIIRGFAAEG- 132 P ++SVV EEM L P+ ++ E+L+ PG+ V R L IRGF + Sbjct: 44 PA-----AVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRST 98 Query: 133 ---QSQNNYLNGLKL-----QGNFYNDAVIDPYMLERAEIMRGPVSVLYGKSSPGGLLNM 184 + Y++G+ QG N ID ++ E++RGP S LYG +S GG++N+ Sbjct: 99 YGIRGIRLYVDGIPATMPDGQGQTSN---IDLSSVQNVEVLRGPFSALYGNAS-GGVMNV 154 Query: 185 VSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDALDD 219 ++ P E G+ ++ G + A D Sbjct: 155 TTQTGQQPPTIEASSYYGSFGSWRYGLKATGATGD 189 >b0584 outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (fepA) {Escherichia coli K12-MG1655} Length = 746 Score = 50.8 bits (120), Expect = 3e-007 Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 35/174 (20%) Query: 83 ISVVTAEEMALHQ-PKSVKEALSYTPGVSV---GTRGASNTYDHLIIRGFAAEG------ 132 +S +TA+E+ + + V + + PGV++ T G + IRG E Sbjct: 50 VSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPENTLILID 109 Query: 133 ----QSQNNYLNGLKLQGNFYNDAV-IDPYMLERAEIMRGPVSVLYGKSSPGGLLNMVSK 187 S+N+ G + + + D + P M+ER E++RGP + YG + GG++N+++K Sbjct: 110 GKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAAGGVVNIITK 169 Query: 188 RPTTEPLKEVQFKAGTDSLF------------QTGFDFSDALDDDGVYSYRLTG 229 + + E + D+ F +T F + L D+ +S+RL G Sbjct: 170 KGSGE------WHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDE--FSFRLYG 215 Query= Z0162 ATP-binding component of hydroxymate-dependent iron transport (fhuC) {Escherichia coli O157:H7 EDL933} (265 letters) Score E Sequences producing significant alignments: (bits) Value b0151 ATP-binding component of hydroxymate-dependent iron transp... 528 e-151 b0588 ATP-binding component of ferric enterobactin transport (fe... 213 8e-057 b4287 ATP-binding component of citrate-dependent iron(III) trans... 204 5e-054 b0199 ATP-binding component of a transporter (abc) {Escherichia ... 112 3e-026 b1709 ATP-binding component of vitamin B12 transport system (btu... 105 2e-024 b3201 putative ATP-binding component of a transport system (yhbG... 105 4e-024 b4106 ATP-binding component of phosphonate transport (phnC) {Esc... 103 9e-024 b2677 ATP-binding component of transport system for glycine, bet... 102 3e-023 b0262 putative ATP-binding component of a transport system (afuC... 101 6e-023 b2129 putative ATP-binding component of a transport system (yehX... 100 1e-022 b0809 ATP-binding component of glutamine high-affinity transport... 99 4e-022 b0914 ATP-binding transport protein; multicopy suppressor of htr... 98 5e-022 b0855 ATP-binding component of putrescine transport system (potG... 98 5e-022 b0886 ATP-binding component of cytochrome-related transport (cyd... 97 1e-021 b0066 putative ATP-binding component of a transport system (yabJ... 96 2e-021 b1117 putative ATP-binding component of a transport system (ycfV... 96 2e-021 b2180 putative ATP-binding component of a transport system (yejF... 95 4e-021 b2422 ATP-binding component of sulfate permease A protein; chrom... 94 1e-020 b3486 putative ATP-binding component of a transport system, frag... 93 2e-020 b3480 ATP-binding protein of nickel transport system (nikE) {Esc... 92 3e-020 b0933 putative ATP-binding component of a transport system (ycbE... 92 3e-020 b1126 ATP-binding component of spermidine/putrescine transport (... 92 4e-020 b0794 putative ATP-binding component of a transport system (ybhF... 92 5e-020 b1290 putative ATP-binding protein of peptide transport system (... 91 6e-020 b3195 putative ATP-binding component of a transport system (yrbF... 91 8e-020 b2547 putative ATP-binding component of a transport system (yphE... 89 2e-019 b3479 ATP-binding protein of nickel transport system (nikD) {Esc... 89 4e-019 b0765 ATP-binding component of molybdate transport (modC) {Esche... 88 7e-019 b2306 ATP-binding component of histidine transport (hisP) {Esche... 87 9e-019 b0449 putative ATP-binding component of a transport system (mdlB... 87 9e-019 b1483 putative ATP-binding component of a transport system {Esch... 87 1e-018 b0495 putative ATP-binding component of a transport system (ybbA... 86 2e-018 b4087 putative ATP-binding component of a transport system (yjcW... 86 3e-018 b3463 ATP-binding component of a membrane-associated complex inv... 86 3e-018 b3749 ATP-binding component of D-ribose high-affinity transport ... 85 6e-018 b3454 ATP-binding component of leucine transport (livF) {Escheri... 84 1e-017 b1917 putative ATP-binding component of a transport system (yecC... 84 1e-017 b1484 putative ATP-binding component of a transport system {Esch... 84 1e-017 b0366 taurine ATP-binding component of a transport system (tauB)... 84 1e-017 b1247 homolog of Salmonella ATP-binding protein of oligopeptide ... 83 2e-017 b3540 putative ATP-binding component of dipeptide transport syst... 82 3e-017 b3567 putative ATP-binding protein of xylose transport system (x... 82 4e-017 b1900 ATP-binding component of high-affinity L-arabinose transpo... 82 4e-017 b0879 putative ATP-binding component of a transport system (ybjZ... 82 4e-017 b0652 ATP-binding protein of glutamate/aspartate transport syste... 82 4e-017 b3725 ATP-binding component of high-affinity phosphate-specific ... 81 8e-017 b3450 ATP-binding component of sn-glycerol 3-phosphate transport... 80 1e-016 b4228 putative ATP-binding component of a transport system (ytfR... 79 3e-016 b1858 putative ATP-binding component of a transport system (yebM... 79 3e-016 b1318 putative ATP-binding component of a transport system (ycjV... 79 3e-016 b2149 ATP-binding component of methyl-galactoside transport and ... 79 4e-016 b3455 ATP-binding component of high-affinity branched-chain amin... 77 1e-015 b0864 ATP-binding component of 3rd arginine transport system (ar... 77 1e-015 b4035 ATP-binding component of transport system for maltose (mal... 76 2e-015 b0490 putative ATP-binding component of a transport system (ybbL... 76 2e-015 b0829 putative ATP-binding component of a transport system {Esch... 75 5e-015 b4097 ATP-binding component of phosphonate transport (phnK) {Esc... 75 6e-015 b1441 putative ATP-binding component of a transport system {Esch... 74 1e-014 b3541 putative ATP-binding component of dipeptide transport syst... 74 1e-014 b3271 putative ATP-binding component of a transport system (yhdZ... 73 2e-014 b0887 ATP-binding component of cytochrome-related transport, Zn ... 73 2e-014 b1246 homolog of Salmonella ATP-binding protein of oligopeptide ... 72 4e-014 b0820 putative ATP-binding component of a transport system (ybiT... 72 4e-014 b2211 putative ATP-binding component of a transport system (yojI... 70 1e-013 b4391 putative ATP-binding component of a transport system (yjjK... 70 1e-013 b1513 putative ATP-binding component of a transport system {Esch... 69 3e-013 b1291 putative ATP-binding protein of peptide transport system (... 69 4e-013 b0127 putative ATP-binding component of a transport system (yadG... 67 2e-012 b4096 ATP-binding component of phosphonate transport (phnL) {Esc... 66 2e-012 b1756 putative ATP-binding component of a transport system {Esch... 66 3e-012 b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia... 65 4e-012 b0949 putative ATP-binding component of a transport system (uup)... 62 4e-011 b0448 ATP-binding component of a transport system (mdlA) {Escher... 62 5e-011 b3352 putative ATP-binding component of a transport system (yheS... 60 2e-010 b0760 ATP-binding component of molybdate transport system (modF)... 54 8e-009 b1682 putative ATP-binding component of a transport system (ynhD... 52 5e-008 b4058 excision nuclease subunit A (uvrA) {Escherichia coli K12-M... 48 8e-007 >b0151 ATP-binding component of hydroxymate-dependent iron transport (fhuC) {Escherichia coli K12-MG1655} Length = 265 Score = 528 bits (1360), Expect = e-151 Identities = 264/265 (99%), Positives = 265/265 (100%) Query: 1 MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH Sbjct: 1 MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH 60 Query: 61 QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF 120 QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF Sbjct: 61 QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF 120 Query: 121 GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI Sbjct: 121 GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 Query: 181 AHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET 240 AHQVDVL+LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET Sbjct: 181 AHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET 240 Query: 241 LEMIYGIPMGILPHPAGAAPVSFVY 265 LEMIYGIPMGILPHPAGAAPVSFVY Sbjct: 241 LEMIYGIPMGILPHPAGAAPVSFVY 265 >b0588 ATP-binding component of ferric enterobactin transport (fepC) {Escherichia coli K12-MG1655} Length = 271 Score = 213 bits (543), Expect = 8e-057 Identities = 107/237 (45%), Positives = 155/237 (65%) Query: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA 84 T+ L++ P G T +IG NG GKSTLL+ L R P+ G + LD + ++ ++SK A Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80 Query: 85 RKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL 144 R++ L Q +TV+ELVA GRYP R+ D E V +A+ G+ LA + Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS 140 Query: 145 VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAV 204 VD+LSGG+RQRAWIAM++AQ++ +LLDEPT+ LDI+HQ+D+L L+ L++E+G T+ AV Sbjct: 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAV 200 Query: 205 LHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGIPMGILPHPAGAAPV 261 LHD+N A RY +L+ALR G+++AQG P EI+ E +E IYG+ I+ P P+ Sbjct: 201 LHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPL 257 >b4287 ATP-binding component of citrate-dependent iron(III) transport protein (fecE) {Escherichia coli K12-MG1655} Length = 255 Score = 204 bits (519), Expect = 5e-054 Identities = 108/251 (43%), Positives = 154/251 (61%), Gaps = 1/251 (0%) Query: 11 TFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 T N++ +L+ +SL+ P GK+T LIG NG GKSTLL R P G + L Sbjct: 2 TLRTENLTVSYGTDKVLNDVSLSLPTGKITALIGPNGCGKSTLLNCFSRLLMPQSGTVFL 61 Query: 71 DAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130 P+ SS+ AR+++ LPQ EG+TV+ELV+ GR PW GR A D +V Sbjct: 62 GDNPINMLSSRQLARRLSLLPQHHLTPEGITVQELVSYGRNPWLSLWGRLSAEDNARVNV 121 Query: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 A++ + LA R + LSGG+RQRA++AM++AQ++ +LLDEPT+ LDI HQVD++ L+ Sbjct: 122 AMNQTRINHLAVRRLTELSGGQRQRAFLAMVLAQNTPVVLLDEPTTYLDINHQVDLMRLM 181 Query: 191 HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGIPMG 250 L + +G TV+AVLHD+N A+RYCD LV + G ++AQGTP E+M L ++ + Sbjct: 182 GEL-RTQGKTVVAVLHDLNQASRYCDQLVVMANGHVMAQGTPEEVMTPGLLRTVFSVEAE 240 Query: 251 ILPHPAGAAPV 261 I P P P+ Sbjct: 241 IHPEPVSGRPM 251 >b0199 ATP-binding component of a transporter (abc) {Escherichia coli K12-MG1655} Length = 343 Score = 112 bits (279), Expect = 3e-026 Identities = 70/212 (33%), Positives = 116/212 (54%), Gaps = 7/212 (3%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA-- 84 L+ +SL PAG++ G+IG +G+GKSTL++ + + P+EG +L+D Q L + S Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 Query: 85 -RKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR 143 R++ + Q TV VA+ + + +V E +SLVGL Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV----KRRVTELLSLVGLGDKHDS 136 Query: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 +LSGG++QR IA +A + + LL DE TSALD A +L L+ +++ GLT++ Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL 196 Query: 204 VLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 + H++++ R CD + + GE+I Q T +E+ Sbjct: 197 ITHEMDVVKRICDCVAVISNGELIEQDTVSEV 228 >b1709 ATP-binding component of vitamin B12 transport system (btuD) {Escherichia coli K12-MG1655} Length = 249 Score = 105 bits (263), Expect = 2e-024 Identities = 79/232 (34%), Positives = 113/232 (48%), Gaps = 22/232 (9%) Query: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLL-KMLGRHQPPSEGEILLDAQPLESWSSKAF 83 T L PLS AG++ L+G NG+GKSTLL +M G +G I QPLE+WS+ Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSGKGSIQFAGQPLEAWSATKL 71 Query: 84 ARKVAYLPQQLPPAEGMTVRELVAIGRYPWHG-ALGRFGAADREKVEEAISLVGLKPLAH 142 A AYL QQ P V WH L + E + + + L Sbjct: 72 ALHRAYLSQQQTPPFATPV----------WHYLTLHQHDKTRTELLNDVAGALALDDKLG 121 Query: 143 RLVDSLSGGERQRAWIAMLVAQDS-------RCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 R + LSGGE QR +A +V Q + + LLLDEP ++LD+A Q + ++ L Q Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ 181 Query: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGI 247 + GL ++ HD+N R+ L+GG+M+A G E++ L YG+ Sbjct: 182 Q-GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232 >b3201 putative ATP-binding component of a transport system (yhbG) {Escherichia coli K12-MG1655} Length = 241 Score = 105 bits (261), Expect = 4e-024 Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 9/238 (3%) Query: 11 TFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 T +N++ GR ++ +SLT +G++ GL+G NG+GK+T M+ P G I++ Sbjct: 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 Query: 71 DAQPLESWSSKAFARK-VAYLPQQLPPAEGMTVRE-LVAIGRYPWHGALGRFGAADRE-K 127 D + A AR+ + YLPQ+ ++V + L+A+ + A RE + Sbjct: 63 DDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQ-----IRDDLSAEQREDR 117 Query: 128 VEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187 E + ++ L + SLSGGER+R IA +A + + +LLDEP + +D +D+ Sbjct: 118 ANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK 177 Query: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIY 245 ++ L ++ GL V+ H++ C+ + G +IA GTP EI++ E ++ +Y Sbjct: 178 RIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234 >b4106 ATP-binding component of phosphonate transport (phnC) {Escherichia coli K12-MG1655} Length = 262 Score = 103 bits (258), Expect = 9e-024 Identities = 69/217 (31%), Positives = 111/217 (51%), Gaps = 12/217 (5%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-----GRHQPPSEGEILLDAQPLESWSSK 81 LH + L G++ L+G +GSGKSTLL+ L G S E+L E ++ Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSVGSHIELLGRTVQREGRLAR 79 Query: 82 AFARKVA---YLPQQLPPAEGMTVRELVAIGRYP----WHGALGRFGAADREKVEEAISL 134 + A Y+ QQ ++V E V IG W F +++ +A++ Sbjct: 80 DIRKSRAHTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTR 139 Query: 135 VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLS 194 VG+ AH+ V +LSGG++QR IA + Q ++ +L DEP ++LD V+ + ++ Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199 Query: 195 QERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGT 231 Q G+TV+ LH ++ A RYC+ +VALR G + G+ Sbjct: 200 QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236 >b2677 ATP-binding component of transport system for glycine, betaine and proline (proV) {Escherichia coli K12-MG1655} Length = 400 Score = 102 bits (253), Expect = 3e-023 Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 10/211 (4%) Query: 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA----RK 86 SL G++ ++G +GSGKST++++L R P+ G++L+D + S +K Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 Query: 87 VAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADR-EKVEEAISLVGLKPLAHRLV 145 +A + Q MTV + A G L A +R EK +A+ VGL+ AH Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGM-----ELAGINAEERREKALDALRQVGLENYAHSYP 162 Query: 146 DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVL 205 D LSGG RQR +A +A + LL+DE SALD + ++ + +L + T++ + Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222 Query: 206 HDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 HD++ A R D + ++ GE++ GTP EI+ Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253 >b0262 putative ATP-binding component of a transport system (afuC) {Escherichia coli K12-MG1655} Length = 352 Score = 101 bits (251), Expect = 6e-023 Identities = 65/224 (29%), Positives = 119/224 (53%), Gaps = 6/224 (2%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 LRN++ R T++ ++LT P G++ L+G +G GK+T+L+++ + PSEG+I +D + Sbjct: 13 LRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCGKTTILRLVAGLEKPSEGQIFIDGE 72 Query: 74 PLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 + S + R + + Q M++ E V G LG A + +V+EA++ Sbjct: 73 DVTHRSIQQ--RDICMVFQSYALFPHMSLGENVGYGLK----MLGVPRAELKARVKEALA 126 Query: 134 LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 +V L+ R VD +SGG++QR +A + + LL DEP S LD + + + L Sbjct: 127 MVDLEGFEDRFVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMRDKIREL 186 Query: 194 SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMR 237 ++ +T + V HD + A D ++ + G ++ G+P ++ R Sbjct: 187 QKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQIGSPQDLYR 230 >b2129 putative ATP-binding component of a transport system (yehX) {Escherichia coli K12-MG1655} Length = 308 Score = 100 bits (249), Expect = 1e-022 Identities = 69/211 (32%), Positives = 110/211 (52%), Gaps = 5/211 (2%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 ++ L+L F G + LIG +GSGKST LKM+ R GEI + + S R+ Sbjct: 17 VNDLNLNFQEGSFSVLIGTSGSGKSTTLKMINRLVEHDSGEIRFAGEEIRSLPVLELRRR 76 Query: 87 VAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP-LAHRLV 145 + Y Q + +V + +A P R DR ++E ++L+GL+ L R Sbjct: 77 MGYAIQSIGLFPHWSVAQNIAT--VPQLQKWSRARIDDR--IDELMALLGLESNLRERYP 132 Query: 146 DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVL 205 LSGG++QR +A +A D + LL+DEP ALD + + + R+ + G T++ V Sbjct: 133 HQLSGGQQQRVGVARALAADPQVLLMDEPFGALDPVTRGALQQEMTRIHRLLGRTIVLVT 192 Query: 206 HDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 HDI+ A R ++LV + GE++ QG P ++ Sbjct: 193 HDIDEALRLAEHLVLMDHGEVVQQGNPLTML 223 >b0809 ATP-binding component of glutamine high-affinity transport system (glnQ) {Escherichia coli K12-MG1655} Length = 240 Score = 98.6 bits (244), Expect = 4e-022 Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 8/226 (3%) Query: 15 RNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74 +N+S +LH + L G+V +IG +GSGKSTLL+ + + + + G++++D Sbjct: 5 KNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLK 64 Query: 75 LES--WSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKV-EEA 131 + + ++ + QQ +T E V G GA + EK+ E Sbjct: 65 VNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGA----NKEEAEKLAREL 120 Query: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 ++ VGL AH LSGG++QR IA +A + +L DEPTSALD + +VL ++ Sbjct: 121 LAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLFDEPTSALDPELRHEVLKVMQ 180 Query: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMR 237 L++E G+T++ V H+I A + L+ + G + G P +++ Sbjct: 181 DLAEE-GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGNPQVLIK 225 >b0914 ATP-binding transport protein; multicopy suppressor of htrB (msbA) {Escherichia coli K12-MG1655} Length = 582 Score = 98.2 bits (243), Expect = 5e-022 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 26/235 (11%) Query: 15 RNISFRVPGRTL--LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 RN++F PGR + L ++L PAGK L+G +GSGKST+ ++ R EGEIL+D Sbjct: 345 RNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDG 404 Query: 73 QPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132 L ++ + +VA + Q + + A R RE++EEA Sbjct: 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNI----------AYARTEQYSREQIEEAA 454 Query: 133 SLVGLKPLAHRLVDS-----------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 + +++ + LSGG+RQR IA + +DS L+LDE TSALD Sbjct: 455 RMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 Query: 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 + + A + L + R T + + H ++ + D +V + G ++ +GT +++ Sbjct: 515 SERAIQAALDELQKNR--TSLVIAHRLSTIEK-ADEIVVVEDGVIVERGTHNDLL 566 >b0855 ATP-binding component of putrescine transport system (potG) {Escherichia coli K12-MG1655} Length = 404 Score = 98.2 bits (243), Expect = 5e-022 Identities = 74/231 (32%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 +RN++ G+ + +SLT G++ L+G +G GKSTLL+ML + PS G+I+LD Sbjct: 49 IRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGV 108 Query: 74 PLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 L + R + + Q MTV + +A G L + A R V E + Sbjct: 109 DLS--QVPPYLRPINMMFQSYALFPHMTVEQNIAFGLK--QDKLPKAEIASR--VNEMLG 162 Query: 134 LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD----IAHQVDVLAL 189 LV ++ A R LSGG+RQR +A +A+ + LLLDEP ALD Q++V+ + Sbjct: 163 LVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDI 222 Query: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET 240 + R+ G+T + V HD A + + G+ + G P EI T Sbjct: 223 LERV----GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPT 269 >b0886 ATP-binding component of cytochrome-related transport (cydC) {Escherichia coli K12-MG1655} Length = 573 Score = 96.7 bits (239), Expect = 1e-021 Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 31/240 (12%) Query: 11 TFALRNISFRVPGRT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 + LR++ F P ++ L +SL AG+ ++G G GKSTLL+ L R P +GEI Sbjct: 338 SLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDPQQGEI 397 Query: 69 LLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKV 128 LL+ P+ S + A + ++ +PQ++ T+R+ + L G++D E + Sbjct: 398 LLNDSPIASLNEAALRQTISVVPQRV-HLFSATLRDNL---------LLASPGSSD-EAL 446 Query: 129 EEAISLVGLKPLAHRLVDS------------LSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 E + VGL+ L L D+ LSGGE +R IA + D+ +LLDEPT Sbjct: 447 SEILRRVGLEKL---LEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTE 503 Query: 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 LD + +L L+ + +E+ TV+ V H + +R+ ++ + G++I QGT AE++ Sbjct: 504 GLDATTESQILELLAEMMREK--TVLMVTHRLRGLSRF-QQIIVMDNGQIIEQGTHAELL 560 >b0066 putative ATP-binding component of a transport system (yabJ) {Escherichia coli K12-MG1655} Length = 232 Score = 96.3 bits (238), Expect = 2e-021 Identities = 64/209 (30%), Positives = 107/209 (51%), Gaps = 6/209 (2%) Query: 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 SLT G+ ++G +G+GKSTLL ++ P+ G + +D ++ + R V+ L Sbjct: 19 SLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDG--VDHTTMPPSRRPVSML 76 Query: 91 PQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSG 150 Q+ +TV + + +G P + A + K+ +G+ L RL LSG Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGL----KLNAVQQGKMHAIARQMGIDNLMARLPGELSG 132 Query: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 G+RQR +A + ++ LLLDEP SALD A + ++L LV Q++ +T++ V H + Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVED 192 Query: 211 AARYCDYLVALRGGEMIAQGTPAEIMRGE 239 AAR V + G + QG E++ G+ Sbjct: 193 AARIATRSVVVADGRIAWQGMTNELLSGK 221 >b1117 putative ATP-binding component of a transport system (ycfV) {Escherichia coli K12-MG1655} Length = 228 Score = 95.9 bits (237), Expect = 2e-021 Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 11/209 (5%) Query: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFA- 84 +LH +S + G++ ++G +GSGKSTLL +LG P+ G+++ + QP+ SS A A Sbjct: 19 VLHNVSFSVGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 78 Query: 85 ---RKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEAISLVGLKPL 140 +K+ ++ Q T E VA+ +G+ A+ + E + VGL Sbjct: 79 LRNQKLGFIYQFHHLLPDFTALENVAMPLL-----IGKKKPAEINSRALEMLKAVGLDHR 133 Query: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200 A+ LSGGERQR IA + + R +L DEPT LD + + L+ L++ +G Sbjct: 134 ANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 193 Query: 201 VIAVLHDINMAARYCDYLVALRGGEMIAQ 229 + V HD+ +A R L +R G + A+ Sbjct: 194 FLVVTHDLQLAKRMSRQL-EMRDGRLTAE 221 >b2180 putative ATP-binding component of a transport system (yejF) {Escherichia coli K12-MG1655} Length = 529 Score = 95.1 bits (235), Expect = 4e-021 Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 19/217 (8%) Query: 30 LSLTFPAGKVTGLIGHNGSGKST----LLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 +S T AG+ GL+G +GSGKST LL+++ S+G I+ D QPL++ + + Sbjct: 305 ISFTLRAGETLGLVGESGSGKSTTGLALLRLIN-----SQGSIIFDGQPLQNLNRRQLLP 359 Query: 86 -----KVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKP 139 +V + + V +++ G L AA RE+ V + VGL P Sbjct: 360 IRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLS---AAQREQQVIAVMHEVGLDP 416 Query: 140 -LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 HR SGG+RQR IA + ++LDEPTS+LD Q +L L+ L Q+ Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILTLLKSLQQKHQ 476 Query: 199 LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 L + + HD+++ C ++ LR GE++ QG A + Sbjct: 477 LAYLFISHDLHVVRALCHQVIILRQGEVVEQGPCARV 513 Score = 85.5 bits (210), Expect = 3e-018 Identities = 71/257 (27%), Positives = 124/257 (48%), Gaps = 33/257 (12%) Query: 8 SDTTFALRNISF----RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKS----TLLKMLGR 59 + T A+ N+S + RT+++ +SL AG+ L+G +GSGKS ++L++L Sbjct: 2 TQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP- 60 Query: 60 HQPPSE---GEILLDAQPLESWSSKAF----ARKVAYLPQQ----LPPAEGMTVR--ELV 106 PP E G+I + L S + K+A + Q+ L P + + E++ Sbjct: 61 -SPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL 119 Query: 107 AIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD---SLSGGERQRAWIAMLVA 163 ++ R G A R ++ + VG++ A RL D LSGGERQR IAM + Sbjct: 120 SLHR-------GMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALL 172 Query: 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223 L+ DEPT+ALD++ Q +L L+ L E + ++ + H++++ + + ++ Sbjct: 173 TRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLSIVRKLAHRVAVMQN 232 Query: 224 GEMIAQGTPAEIMRGET 240 G + Q A + T Sbjct: 233 GRCVEQNYAATLFASPT 249 >b2422 ATP-binding component of sulfate permease A protein; chromate resistance (cysA) {Escherichia coli K12-MG1655} Length = 365 Score = 93.6 bits (231), Expect = 1e-020 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 3/216 (1%) Query: 23 GRT-LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 GRT +L+ +SL P+G++ L+G +GSGK+TLL+++ + + G I + ++ Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72 Query: 82 AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLA 141 RKV ++ Q MTV + +A G AA + KV + + +V L LA Sbjct: 73 D--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTKLLEMVQLAHLA 130 Query: 142 HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTV 201 R LSGG++QR +A +A + + LLLDEP ALD + ++ + +L +E T Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTS 190 Query: 202 IAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMR 237 + V HD A D +V + G + P ++ R Sbjct: 191 VFVTHDQEEATEVADRVVVMSQGNIEQADAPDQVWR 226 >b3486 putative ATP-binding component of a transport system, fragment 1 (yhiH) {Escherichia coli K12-MG1655} Length = 894 Score = 93.2 bits (230), Expect = 2e-020 Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 7 HSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 +++ R+++ R + ++ P G++ G +G NG GKST +KML P SEG Sbjct: 255 NAEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEG 314 Query: 67 EILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAAD-R 125 E L QP++ R+V Y+ Q +TVR+ + + H L A+ Sbjct: 315 EAWLFGQPVDPKDIDT-RRRVGYMSQAFSLYNELTVRQNLEL-----HARLFHIPEAEIP 368 Query: 126 EKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185 +V E L + L +SL G RQR +A+ V L+LDEPTS +D + Sbjct: 369 ARVAEMSERFKLNDVEDILPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDM 428 Query: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 L+ LS++ +T+ H +N A R CD + + G+++A GTP E++ Sbjct: 429 FWQLMVDLSRQDKVTIFISTHFMNEAER-CDRISLMHAGKVLASGTPQELV 478 Score = 79.3 bits (194), Expect = 2e-016 Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 21/239 (8%) Query: 5 TNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS 64 + H T AL NI+ +P R ++ GLIG +G GKS+LL ++ + Sbjct: 2 SQHYGKTVALNNITLDIPARCMV-------------GLIGPDGVGKSSLLSLISGARVIE 48 Query: 65 EGEIL-LDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAI-GRYPWHGALGRFGA 122 +G ++ L + + ++A++PQ L G + +++ + L Sbjct: 49 QGNVMVLGGDMRDPKHRRDVCPRIAWMPQGL----GKNLYHTLSVYENVDFFARLFGHDK 104 Query: 123 ADRE-KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIA 181 A+RE ++ E ++ GL P R LSGG +Q+ + + D L+LDEPT+ +D Sbjct: 105 AEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPL 164 Query: 182 HQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGET 240 + L+ + Q + + V A D+LVA+ GE++A G+ AE +R +T Sbjct: 165 SRSQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGS-AEELRQQT 222 >b3480 ATP-binding protein of nickel transport system (nikE) {Escherichia coli K12-MG1655} Length = 268 Score = 92.4 bits (228), Expect = 3e-020 Identities = 61/210 (29%), Positives = 107/210 (50%), Gaps = 9/210 (4%) Query: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS--- 80 + +L+ +SLT +G+ L+G +G GKSTL ++L + P++G I +PL + Sbjct: 25 QAVLNNVSLTLKSGETVALLGRSGCGKSTLARLLVGLESPAQGNISWRGEPLAKLNRAQR 84 Query: 81 KAFARKVAYLPQQLPPAEG--MTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK 138 KAF R + + Q A TVRE++ R P L + + E + V L Sbjct: 85 KAFRRDIQMVFQDSISAVNPRKTVREIL---REPMRHLLSLKKSEQLARASEMLKAVDLD 141 Query: 139 P-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197 + + LSGG+ QR +A +A + + L+LDE S LD+ Q V+ L+ +L Q+ Sbjct: 142 DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQF 201 Query: 198 GLTVIAVLHDINMAARYCDYLVALRGGEMI 227 G + + HD+ + R+C ++ + G+++ Sbjct: 202 GTACLFITHDLRLVERFCQRVMVMDNGQIV 231 >b0933 putative ATP-binding component of a transport system (ycbE) {Escherichia coli K12-MG1655} Length = 255 Score = 92.4 bits (228), Expect = 3e-020 Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 17/218 (7%) Query: 10 TTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 T L +S +L+ L L PAG+ ++G +G GKSTLL++L + P+ G++L Sbjct: 10 TPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVGRSGGGKSTLLRLLAGLETPTAGDVL 69 Query: 70 LDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIG-RYPWHGALGRFGAADREKV 128 PL ++ + +L P + +V + V +G + W R+ Sbjct: 70 AGTTPLAEIQEDT---RMMFQDARLLPWK--SVIDNVGLGLKGQW-----------RDAA 113 Query: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 A++ VGL+ A +LSGG++QR +A + LLLDEP ALD ++++ Sbjct: 114 RRALAAVGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRLEMQD 173 Query: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 L+ L QE G TV+ V HD++ A D ++ + G++ Sbjct: 174 LIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 211 >b1126 ATP-binding component of spermidine/putrescine transport (potA) {Escherichia coli K12-MG1655} Length = 378 Score = 92.0 bits (227), Expect = 4e-020 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 18/219 (8%) Query: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ-----PLES 77 G+ ++ L LT G+ L+G +G GK+T+L+++ + G I+LD + P E+ Sbjct: 29 GKEVIPQLDLTINNGEFLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAEN 88 Query: 78 WSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEAISLVG 136 + A P MTV E VA G + + AA+ +V EA+ +V Sbjct: 89 RYVNTVFQSYALFPH-------MTVFENVAFGL-----RMQKTPAAEITPRVMEALRMVQ 136 Query: 137 LKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196 L+ A R LSGG++QR IA V R LLLDE SALD + + + L ++ Sbjct: 137 LETFAQRKPHQLSGGQQQRVAIARAVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRK 196 Query: 197 RGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 G+T + V HD A D +V +R G + GTP EI Sbjct: 197 LGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREI 235 >b0794 putative ATP-binding component of a transport system (ybhF) {Escherichia coli K12-MG1655} Length = 583 Score = 91.7 bits (226), Expect = 5e-020 Identities = 62/199 (31%), Positives = 102/199 (51%), Gaps = 7/199 (3%) Query: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPP 96 G++ GL+G NG+GKST KM+ P+ G+ L+ L+ S KA + + Y+ Q+ Sbjct: 360 GEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMDLKESSGKA-RQHLGYMAQKFSL 418 Query: 97 AEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRA 156 +TV + + + G G G A EK+ GLK +A D L G +QR Sbjct: 419 YGNLTVEQNLRF----FSGVYGLRGRAQNEKISRMSEAFGLKSIASHATDELPLGFKQRL 474 Query: 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216 +A + + L LDEPTS +D + + ++ + E+G+TV+ H ++ A YCD Sbjct: 475 ALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSM-VEKGVTVMVTTHFMD-EAEYCD 532 Query: 217 YLVALRGGEMIAQGTPAEI 235 + + G++IA GTP ++ Sbjct: 533 RIGLVYRGKLIASGTPDDL 551 Score = 89.7 bits (221), Expect = 2e-019 Identities = 65/228 (28%), Positives = 113/228 (49%), Gaps = 11/228 (4%) Query: 8 SDTTFALRNISFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS 64 +D L + R PG + + PL T AG VTGL+G +G+GK+TL++ML G +P S Sbjct: 7 NDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDS 66 Query: 65 EGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAAD 124 ++ P+++ A + Y+PQ+ E +TV E + + + G A Sbjct: 67 GSATVIGFDPIKN--DGALHAVLGYMPQKFGLYEDLTVMENLNL----YADLRSVTGEAR 120 Query: 125 REKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184 ++ + L P RL LSGG +Q+ +A + + + LLLDEP +D + Sbjct: 121 KQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRR 180 Query: 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232 ++ +VH L+ E G+ ++ ++ A C ++ + GE++ QG P Sbjct: 181 ELWQMVHELAGE-GMLILWSTSYLD-EAEQCRDVLLMNEGELLYQGEP 226 >b1290 putative ATP-binding protein of peptide transport system (sapF) {Escherichia coli K12-MG1655} Length = 268 Score = 91.3 bits (225), Expect = 6e-020 Identities = 63/235 (26%), Positives = 117/235 (49%), Gaps = 4/235 (1%) Query: 11 TFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 TF R FR + PLS T G+ +IG NGSGKSTL KML P+ GE+L+ Sbjct: 14 TFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLI 73 Query: 71 DAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVA-IGRYPWHGALGRFGAADREKVE 129 D PL ++++ + Q P+ + R+ ++ I +P R+++ Sbjct: 74 DDHPLHFGDYSFRSQRIRMIFQD--PSTSLNPRQRISQILDFPLRLNTDLEPEQRRKQII 131 Query: 130 EAISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 E + +VGL P L+ G++QR +A + + ++ DE ++LD++ + ++ Sbjct: 132 ETMRMVGLLPDHVSYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLIN 191 Query: 189 LVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEM 243 L+ L +++G++ I V I M D ++ + GE++ +G+ A+++ E+ Sbjct: 192 LMLELQEKQGISYIYVTQHIGMMKHISDQVLVMHQGEVVERGSTADVLASPLHEL 246 >b3195 putative ATP-binding component of a transport system (yrbF) {Escherichia coli K12-MG1655} Length = 269 Score = 90.9 bits (224), Expect = 8e-020 Identities = 69/252 (27%), Positives = 116/252 (46%), Gaps = 11/252 (4%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 +R++SF R + +SLT P GK+T ++G +G GK+TLL+++G P GEIL D + Sbjct: 11 MRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 70 Query: 74 PLESWSSK---AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130 + + S ++++ L Q M V + VA YP V Sbjct: 71 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA---YPLREHTQLPAPLLHSTVMM 127 Query: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 + VGL+ A + LSGG +RA +A +A + ++ DEP D ++ L+ Sbjct: 128 KLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLI 187 Query: 191 HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRG---ETLEMIYGI 247 L+ G+T + V HD+ D+ L +++A G+ + + + GI Sbjct: 188 SELNSALGVTCVVVSHDVPEVLSIADHAWILADKKIVAHGSAQALQANPDPRVRQFLDGI 247 Query: 248 PMGILP--HPAG 257 G +P +PAG Sbjct: 248 ADGPVPFRYPAG 259 >b2547 putative ATP-binding component of a transport system (yphE) {Escherichia coli K12-MG1655} Length = 503 Score = 89.4 bits (220), Expect = 2e-019 Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 6/211 (2%) Query: 20 RVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE--- 76 R PG L ++ T G+V L+G NG+GKSTL++ML + P G+I + LE Sbjct: 19 RYPGVVALDNVNFTLNKGEVRALLGKNGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDE 78 Query: 77 -SWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV 135 + + +A V + Q+L EG+TV E + +G++P + + + + + + Sbjct: 79 ATLTRRAAELGVRAVYQELSLVEGLTVAENLCLGQWPRRNGMIDY-LQMAQDAQRCLQAL 137 Query: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 G+ +LV +LS ++Q IA ++ + R ++LDEPTS+L A V++ V ++S Sbjct: 138 GVDVSPEQLVSTLSPAQKQLVEIARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMS- 196 Query: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 G+ VI V H + R +R G++ Sbjct: 197 ALGVAVIYVSHRMEEIRRIASCATVMRDGQV 227 Score = 66.6 bits (161), Expect = 2e-012 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 29/215 (13%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWS-SKAFAR 85 L +S T G+V G+ G G+G+S LLK + + +GEI+++ + + R Sbjct: 278 LEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDMLKR 337 Query: 86 KVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKV---------------EE 130 + Y P+ A G PW G +R+K+ EE Sbjct: 338 GIGYTPENRKEA-----------GIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEE 386 Query: 131 AISLVGLKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189 + + +K + + +LSGG +Q+ I V S+ LLLDEPT +DI + + + Sbjct: 387 VMQRMTVKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRI 446 Query: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGG 224 V L+ E G +V+ + ++ CD ++ L+ G Sbjct: 447 VRELAAE-GKSVVFISSEVEELPLVCDRILLLQHG 480 >b3479 ATP-binding protein of nickel transport system (nikD) {Escherichia coli K12-MG1655} Length = 254 Score = 88.6 bits (218), Expect = 4e-019 Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 14/224 (6%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKS----TLLKMLGRHQPPSEGEIL 69 LRNI+ + + L+H +SLT G+V L+G +GSGKS L +L + GEIL Sbjct: 7 LRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEIL 65 Query: 70 LDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129 D +P+ + + K+A + Q P + ALG+ AD + Sbjct: 66 ADGKPVSPCALRGI--KIATIMQN--PRSAFNPLHTMHTHARETCLALGK--PADDATLT 119 Query: 130 EAISLVGLKPLAHRLV---DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186 AI VGL+ A L +SGG QR IAM V +S ++ DEPT+ LD+ Q + Sbjct: 120 AAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESPFIIADEPTTDLDVVAQARI 179 Query: 187 LALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 L L+ + Q++ ++ V HD+ + AR D + + G+++ QG Sbjct: 180 LDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQG 223 >b0765 ATP-binding component of molybdate transport (modC) {Escherichia coli K12-MG1655} Length = 352 Score = 87.8 bits (216), Expect = 7e-019 Identities = 57/205 (27%), Positives = 106/205 (51%), Gaps = 10/205 (4%) Query: 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 T PA +T + G +G+GK++L+ + P +G I+L+ + L + + P+ Sbjct: 20 TLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAE-----KGICLTPE 74 Query: 93 QLPPAEGMTVRELVAIGRYPWHGALGRFGAADR--EKVEEAISLVGLKPLAHRLVDSLSG 150 + G ++ Y G L R+G + ++ ++ ++L+G++PL RL SLSG Sbjct: 75 KR--RVGYVFQDARLFPHYKVRGNL-RYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSG 131 Query: 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINM 210 GE+QR I + LLLDEP ++LDI + ++L + RL++E + ++ V H ++ Sbjct: 132 GEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDE 191 Query: 211 AARYCDYLVALRGGEMIAQGTPAEI 235 D ++ L G++ A G E+ Sbjct: 192 ILHLADRVMVLENGQVKAFGALEEV 216 >b2306 ATP-binding component of histidine transport (hisP) {Escherichia coli K12-MG1655} Length = 257 Score = 87.4 bits (215), Expect = 9e-019 Identities = 70/224 (31%), Positives = 110/224 (49%), Gaps = 18/224 (8%) Query: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 +L +SL AG V +IG +GSGKST L+ + + PSEG I+++ Q + K Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 Query: 86 KVA-------------YLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132 KVA + Q MTV E V LG RE+ + + Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ---VLGLSKQEARERAVKYL 136 Query: 133 SLVGLKPLAH-RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 + VG+ A + LSGG++QR IA +A + LL DEPTSALD +VL ++ Sbjct: 137 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196 Query: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 +L++E G T++ V H++ A +++ L G++ +G P ++ Sbjct: 197 QLAEE-GKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGAPEQL 239 >b0449 putative ATP-binding component of a transport system (mdlB) {Escherichia coli K12-MG1655} Length = 593 Score = 87.4 bits (215), Expect = 9e-019 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 27/241 (11%) Query: 11 TFALRNISFRVPGRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 T + N+SF L L ++L+ P+ L+GH GSGKSTL +L + P +EGEI Sbjct: 340 TIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 Query: 70 LDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVE 129 LD +PL S S A + VA + QQ P T V +GR E+V Sbjct: 400 LDGRPLSSLSHSALRQGVA-MVQQDPVVLADTFLANVTLGR-----------DISEERVW 447 Query: 130 EAISLVGLKPLAHRLVD-----------SLSGGERQRAWIAMLVAQDSRCLLLDEPTSAL 178 +A+ V L LA + D +LS G++Q +A ++ + + L+LDE T+++ Sbjct: 448 QALETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASI 507 Query: 179 DIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRG 238 D + A+ H L+ R T + V+ D ++ L G+ + QGT +++ Sbjct: 508 DSGTE---QAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAA 564 Query: 239 E 239 + Sbjct: 565 Q 565 >b1483 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 308 Score = 87.0 bits (214), Expect = 1e-018 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 25/242 (10%) Query: 8 SDTTFALRNISFRVPGRT-----------LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKM 56 SDT LR++ P R ++ + L G+ G++G +G GKSTL ++ Sbjct: 2 SDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQL 61 Query: 57 LGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGA 116 L PS G+ + + F ++ L +LP +T +A Sbjct: 62 LMGMLQPSHGQYIRSGS--QRIMQMVFQDPLSSLNPRLPVWRIITEPLWIA--------- 110 Query: 117 LGRFGAADREKVEEAISL-VGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEP 174 R R + E +++ VG++P RL + SGG+RQR IA ++ ++LDEP Sbjct: 111 -KRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEP 169 Query: 175 TSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 TSALDI+ Q +L L+ L + GLT + + H++++ D + + G+++ G + Sbjct: 170 TSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQ 229 Query: 235 IM 236 ++ Sbjct: 230 VL 231 >b0495 putative ATP-binding component of a transport system (ybbA) {Escherichia coli K12-MG1655} Length = 228 Score = 86.3 bits (212), Expect = 2e-018 Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 15/209 (7%) Query: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL----ESWSS 80 ++L + L G+ L+G +GSGKSTLL +L S GE+ L QPL E + Sbjct: 24 SILTGVELVVKRGETIALVGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARA 83 Query: 81 KAFARKVAYLPQQ---LPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL 137 K A+ V ++ Q +P + EL A+ R G A R + + +GL Sbjct: 84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLR-------GESSAESRNGAKALLEQLGL 136 Query: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197 L LSGGE+QR +A L DEPT LD + L+ L++E Sbjct: 137 GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH 196 Query: 198 GLTVIAVLHDINMAARYCDYLVALRGGEM 226 G T+I V HD+ +AAR CD + L G++ Sbjct: 197 GTTLIMVTHDLQLAAR-CDRCLRLVNGQL 224 >b4087 putative ATP-binding component of a transport system (yjcW) {Escherichia coli K12-MG1655} Length = 510 Score = 85.9 bits (211), Expect = 3e-018 Identities = 63/224 (28%), Positives = 112/224 (50%), Gaps = 5/224 (2%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR- 85 L ++LT G++ L+G NG+GKSTL+K+L P++G I ++ K A+ Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNISYNKLDHKLAAQL 80 Query: 86 KVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADRE-KVEEAISL--VGLKPLAH 142 + + Q+L + +TV E + IGR+ G RE +V A+ L VGLK Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKICGVNIIDWREMRVRAAMMLLRVGLKVDLD 140 Query: 143 RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVI 202 V +LS +Q IA + D++ +++DEPTS+L +VD L L+ ++ G ++ Sbjct: 141 EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL-TNKEVDYLFLIMNQLRKEGTAIV 199 Query: 203 AVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYG 246 + H + R CD ++ G + G +++ + + ++ G Sbjct: 200 YISHKLAEIRRICDRYTVMKDGSSVCSGIVSDVSNDDIVRLMVG 243 Score = 64.3 bits (155), Expect = 8e-012 Identities = 58/252 (23%), Positives = 114/252 (45%), Gaps = 18/252 (7%) Query: 9 DTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 +T F +RN++ R R + +S + G++ G G GSG++ L+ L + GEI Sbjct: 263 ETVFEVRNVTSR--DRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 Query: 69 LLDAQPLESWSSKAFARK-VAYLPQQ---------LPPAEGMTVRELVAIGRYPWHGALG 118 L+ + + S +K +AY+ + A+ M + + G Y GA+G Sbjct: 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYK--GAMG 378 Query: 119 RFGAADREKV-EEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 F D ++ E L+ LK ++ + LSGG +Q+ I+ + ++ DEPT Sbjct: 379 LFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTR 438 Query: 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 +D+ + ++ ++ +L+ + G ++ V ++ CD + G + T + M Sbjct: 439 GIDVGAKAEIYKVMRQLADD-GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDM 497 Query: 237 RGETLEMIYGIP 248 E + M + +P Sbjct: 498 SEEEI-MAWALP 508 >b3463 ATP-binding component of a membrane-associated complex involved in cell division (ftsE) {Escherichia coli K12-MG1655} Length = 222 Score = 85.9 bits (211), Expect = 3e-018 Identities = 68/207 (32%), Positives = 97/207 (46%), Gaps = 8/207 (3%) Query: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL---DAQPLESWS 79 GR L ++ G++ L GH+G+GKSTLLK++ + PS G+I D L++ Sbjct: 14 GRQALQGVTFHMQPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE 73 Query: 80 SKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKP 139 R++ + Q TV + VAI G G R +V A+ VGL Sbjct: 74 VPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLI----IAGASGDDIRRRVSAALDKVGLLD 129 Query: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199 A LSGGE+QR IA V LL DEPT LD A +L L ++ G+ Sbjct: 130 KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GV 188 Query: 200 TVIAVLHDINMAARYCDYLVALRGGEM 226 TV+ HDIN+ +R ++ L G + Sbjct: 189 TVLMATHDINLISRRSYRMLTLSDGHL 215 >b3749 ATP-binding component of D-ribose high-affinity transport system (rbsA) {Escherichia coli K12-MG1655} Length = 501 Score = 84.7 bits (208), Expect = 6e-018 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 12/239 (5%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL-LDA 72 L+ I PG L +L G+V L+G NG+GKST++K+L G +L L Sbjct: 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGTLLWLGK 66 Query: 73 QPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADRE----KV 128 + + + + + Q+L +T+ E + +GR + RFG D + + Sbjct: 67 ETTFTGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGR----EFVNRFGKIDWKTMYAEA 122 Query: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLA 188 ++ ++ + L+ + +LV LS G++Q IA +++ +S+ +++DEPT AL + Sbjct: 123 DKLLAKLNLRFKSDKLVGDLSIGDQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFR 182 Query: 189 LVHRL-SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYG 246 ++ L SQ RG+ I+ H + CD + R G+ IA+ A + +EM+ G Sbjct: 183 VIRELKSQGRGIVYIS--HRMKEIFEICDDVTVFRDGQFIAEREVASLTEDSLIEMMVG 239 Score = 67.0 bits (162), Expect = 1e-012 Identities = 50/212 (23%), Positives = 105/212 (49%), Gaps = 8/212 (3%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK-AFAR 85 ++ +S T G++ G+ G G+G++ L+K+L P + G + LD + + S + A Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 Query: 86 KVAYLPQQLPP---AEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEAISLVGLK-P 139 + Y+ + GM+V+E +++ + G A +++ V + I L +K P Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNVKTP 387 Query: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199 + + LSGG +Q+ IA + + L+LDEPT +D+ + ++ L+++ + GL Sbjct: 388 SMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAD-GL 446 Query: 200 TVIAVLHDINMAARYCDYLVALRGGEMIAQGT 231 ++I V ++ D ++ + G + + T Sbjct: 447 SIILVSSEMPEVLGMSDRIIVMHEGHLSGEFT 478 >b3454 ATP-binding component of leucine transport (livF) {Escherichia coli K12-MG1655} Length = 241 Score = 84.0 bits (206), Expect = 1e-017 Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 17/225 (7%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW-SSKAFAR 85 LH +SL G++ LIG NG+GK+TLL L + G I+ D + + W ++K Sbjct: 25 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDDKDITDWQTAKIMRE 84 Query: 86 KVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV-GLKPLAH-- 142 VA +P+ MTV E +A+G + A+R++ +E I V L P H Sbjct: 85 AVAIVPEGRRVFSRMTVEENLAMGGF----------FAERDQFQERIKWVYELFPRLHER 134 Query: 143 --RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200 + ++SGGE+Q I + + R LLLDEP+ L + + +L +E+G+T Sbjct: 135 RIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMT 193 Query: 201 VIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIY 245 + V + N A + D L G ++ T ++ E + Y Sbjct: 194 IFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAY 238 >b1917 putative ATP-binding component of a transport system (yecC) {Escherichia coli K12-MG1655} Length = 250 Score = 84.0 bits (206), Expect = 1e-017 Identities = 64/225 (28%), Positives = 108/225 (48%), Gaps = 12/225 (5%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 ++N+ + G+T+LH + L G+V +IG +GSGK+TLL+ + + P G I + Sbjct: 6 VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRSINLLEQPEAGTITVGDI 65 Query: 74 PLESWSS--------KAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADR 125 +++ S + + V ++ Q TV E + G G A Sbjct: 66 TIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-- 123 Query: 126 EKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185 + E ++ VGL LSGG++QR IA +A +L DEPTSALD + Sbjct: 124 -RARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGE 182 Query: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 VL + +L+QE+ T++ V H+++ A D + + G ++ QG Sbjct: 183 VLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 >b1484 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 328 Score = 84.0 bits (206), Expect = 1e-017 Identities = 67/260 (25%), Positives = 119/260 (45%), Gaps = 32/260 (12%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE-----------GEILLDAQP- 74 L+ +SL G++ GL+G +GSGKS ++ R P GE +L+A+ Sbjct: 25 LNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREK 84 Query: 75 -LESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRY-PWHGALGRFGAAD---REKVE 129 L W A L P + ++ + I + P R A D ++ Sbjct: 85 QLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIP 144 Query: 130 EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189 +A+ ++ P LSGG RQR IA+ + + + ++ DEPT+ALD+ Q+ VL L Sbjct: 145 DAVEVMSRYPF------ELSGGMRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRL 198 Query: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGE----TLEMI- 244 + ++ G V+ + HD+ + ++ CD + + G +I G A+++ T+ ++ Sbjct: 199 LKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLLQ 258 Query: 245 ----YGIPMGILPHPAGAAP 260 +G+P +LP G P Sbjct: 259 CAPEHGVPRQLLPAIPGTVP 278 >b0366 taurine ATP-binding component of a transport system (tauB) {Escherichia coli K12-MG1655} Length = 255 Score = 84.0 bits (206), Expect = 1e-017 Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 15/205 (7%) Query: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 G+ L ++LT +G++ ++G +G GK+TLL ++ P G I L + +E ++ Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIQLAGKRIEGPGAE- 71 Query: 83 FARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA---ISLVGLKP 139 R V + + L P V++ VA G L G +++E A + VGL+ Sbjct: 72 --RGVVFQNEGLLPWRN--VQDNVAFG-------LQLAGIEKMQRLEIAHQMLKKVGLEG 120 Query: 140 LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199 R + LSGG+RQR IA +A + + LLLDEP ALD + + L+ +L QE G Sbjct: 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRDQMQTLLLKLWQETGK 180 Query: 200 TVIAVLHDINMAARYCDYLVALRGG 224 V+ + HDI A LV L G Sbjct: 181 QVLLITHDIEEAVFMATELVLLSSG 205 >b1247 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppF) {Escherichia coli K12-MG1655} Length = 334 Score = 82.8 bits (203), Expect = 2e-017 Identities = 62/226 (27%), Positives = 112/226 (49%), Gaps = 12/226 (5%) Query: 19 FRVPGRTL--LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI------LL 70 F P +TL + ++L G+ G++G +G GKST + + ++G + LL Sbjct: 30 FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELL 89 Query: 71 DAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130 +P + W + ++ + MT+ E++A +H + R RE+V+ Sbjct: 90 GMKP-DEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEV--RERVKA 146 Query: 131 AISLVGLKP-LAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189 + VGL P L +R SGG+ QR IA + + + ++ DEP SALD++ Q V+ L Sbjct: 147 MMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNL 206 Query: 190 VHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 + +L +E GL++I + HD+ + D ++ + G + GT E+ Sbjct: 207 LQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEV 252 >b3540 putative ATP-binding component of dipeptide transport system (dppF) {Escherichia coli K12-MG1655} Length = 334 Score = 82.4 bits (202), Expect = 3e-017 Identities = 64/216 (29%), Positives = 108/216 (50%), Gaps = 11/216 (5%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL---ESWSSKAF 83 L +S GK ++G +G GKSTL ++L + P+ GE+ Q L + + K Sbjct: 38 LDGVSFNLERGKTLAVVGESGCGKSTLGRLLTMIEMPTGGELYYQGQDLLKHDPQAQKLR 97 Query: 84 ARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISL---VGLKPL 140 +K+ + Q P + R+ V G+ L + ++ E+A+S+ VGLK Sbjct: 98 RQKIQIVFQN--PYGSLNPRKKV--GQILEEPLLINTSLSKEQRREKALSMMAKVGLKTE 153 Query: 141 AH-RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGL 199 + R SGG+RQR IA + D ++ DEP SALD++ + VL L+ L QE GL Sbjct: 154 HYDRYPHMFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGL 213 Query: 200 TVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 + + + HD+++ D ++ + G + +GT +I Sbjct: 214 SYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKDQI 249 >b3567 putative ATP-binding protein of xylose transport system (xylG) {Escherichia coli K12-MG1655} Length = 513 Score = 82.0 bits (201), Expect = 4e-017 Identities = 66/251 (26%), Positives = 117/251 (46%), Gaps = 9/251 (3%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILLD 71 ++NI+ + + L AG++ L G NGSGKSTL+K+L P EGEI+ Sbjct: 7 MKNITKTFGSVKAIDNVCLRLNAGEIVSLCGENGSGKSTLMKVLCGIYPHGSYEGEIIFA 66 Query: 72 AQPLESWSSKAFARK-VAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130 + +++ + RK +A + Q+L + +TV E + +G H + + + ++ Sbjct: 67 GEEIQASHIRDTERKGIAIIHQELALVKELTVLENIFLGNEITHNGIMDYDLMTL-RCQK 125 Query: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 ++ V L V L G++Q IA + + R L+LDEPT++L + +L + Sbjct: 126 LLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQVRLLILDEPTASL-TEQETSILLDI 184 Query: 191 HRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYGIPMG 250 R Q+ G+ I + H +N D + +R G+ I A + + + M+ G + Sbjct: 185 IRDLQQHGIACIYISHKLNEVKAISDTICVIRDGQHIGTRDAAGMSEDDIITMMVGRELT 244 Query: 251 IL----PHPAG 257 L PH G Sbjct: 245 ALYPNEPHTTG 255 Score = 67.0 bits (162), Expect = 1e-012 Identities = 53/213 (24%), Positives = 115/213 (53%), Gaps = 15/213 (7%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS-EGEILLDAQPLESWS-SKAFA 84 ++ +S + G++ G+ G G+G++ ++ L P EG+I +D + ++ + +A A Sbjct: 277 VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQAIA 336 Query: 85 RKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRF--------GAADREKVEEAISLVG 136 + +A +P+ +G+ ++A+G+ AL +F AA+++ + E+I + Sbjct: 337 QGIAMVPEDRK-RDGIV--PVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQLK 393 Query: 137 LKPLAHRL-VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 +K + L + LSGG +Q+A +A + + R L+LDEPT +DI + ++ L+++L Q Sbjct: 394 VKTSSPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLINQLVQ 453 Query: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIA 228 + G+ VI + ++ D ++ + G++ A Sbjct: 454 Q-GIAVIVISSELPEVLGLSDRVLVMHEGKLKA 485 >b1900 ATP-binding component of high-affinity L-arabinose transport system (araG) {Escherichia coli K12-MG1655} Length = 504 Score = 82.0 bits (201), Expect = 4e-017 Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 12/244 (4%) Query: 13 ALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 + R I PG L +S AG+V L+G NG+GKSTLLK+L + P+ G ++++ Sbjct: 9 SFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGAGKSTLLKILSGNYAPTTGSVVING 68 Query: 73 QPLE-SWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131 Q + S ++ A VA + Q+L MTV E + +G+ P G + + E + Sbjct: 69 QEMSFSDTTAALNAGVAIIYQELHLVPEMTVAENIYLGQLPHKGGIVNRSLLNYEAGLQ- 127 Query: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 + +G+ + LS G+ Q IA +A++++ + DEPTS+L A ++D L V Sbjct: 128 LKHLGMDIDPDTPLKYLSIGQWQMVEIAKALARNAKIIAFDEPTSSLS-AREIDNLFRVI 186 Query: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP---------AEIMRGETLE 242 R ++ G ++ V H + D + + G + T + M G + Sbjct: 187 RELRKEGRVILYVSHRMEEIFALSDAITVFKDGRYVKTFTDMQQVDHDALVQAMVGRDIG 246 Query: 243 MIYG 246 IYG Sbjct: 247 DIYG 250 Score = 76.6 bits (187), Expect = 2e-015 Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 12/224 (5%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 LR + + PG + P+SL +G++ GL G G+G+S L+K + + G++ +D Q Sbjct: 261 LRLDAVKAPG--VRTPISLAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQ 318 Query: 74 PLESWS-SKAFARKVAYLPQQLPPAEGM----TVRELVAIGRYPWH---GALGRFGAADR 125 P++ S A A + P+ AEG+ +VR+ + I H G + G + Sbjct: 319 PIDIRKPSHAIAAGMMLCPEDRK-AEGIIPVHSVRDNINISARRKHVLGGCVINNGWEEN 377 Query: 126 EKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185 SL P A +L+ +LSGG +Q+A + ++++ + +LLDEPT +D+ + + Sbjct: 378 NADHHIRSLNIKTPGAEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHE 437 Query: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ 229 + +++ L+ + G+ V+ D+ D +V +R GE+ + Sbjct: 438 IYNVIYALAAQ-GVAVLFASSDLPEVLGVADRIVVMREGEIAGE 480 >b0879 putative ATP-binding component of a transport system (ybjZ) {Escherichia coli K12-MG1655} Length = 648 Score = 82.0 bits (201), Expect = 4e-017 Identities = 59/210 (28%), Positives = 108/210 (51%), Gaps = 18/210 (8%) Query: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 +L +SL AG++ ++G +GSGKSTL+ +LG + G + Q + + + A A+ Sbjct: 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQ 82 Query: 86 ----KVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADRE----KVEEAISLVGL 137 ++ Q+ +T + V + + +R+ + +E + +GL Sbjct: 83 LRREHFGFIFQRYHLLSHLTAEQNVEVPAV--------YAGLERKQRLLRAQELLQRLGL 134 Query: 138 KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER 197 + LSGG++QR IA + + +L DEPT ALD +V+A++H+L ++R Sbjct: 135 EDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDR 193 Query: 198 GLTVIAVLHDINMAARYCDYLVALRGGEMI 227 G TVI V HD +AA+ + ++ +R GE++ Sbjct: 194 GHTVIIVTHDPQVAAQ-AERVIEIRDGEIV 222 >b0652 ATP-binding protein of glutamate/aspartate transport system (gltL) {Escherichia coli K12-MG1655} Length = 241 Score = 82.0 bits (201), Expect = 4e-017 Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 6/216 (2%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 L+N+S +L S G+V + G +GSGKSTL+K + +P +GEI +D Sbjct: 4 LKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLIKTVNGLEPVQQGEITVDGI 63 Query: 74 PLESWSSKA--FARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131 + + +V + Q +++ E + + + L R A REK + Sbjct: 64 VVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQVK---VLKRDKAPAREKALKL 120 Query: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 + VGL A++ LSGG++QR IA + D +L DEPTSALD +VL ++ Sbjct: 121 LERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 L+ E G+T++ V H++ A + + ++ + G+++ Sbjct: 181 ELANE-GMTMMVVTHEMGFARKVANRVIFMDEGKIV 215 >b3725 ATP-binding component of high-affinity phosphate-specific transport system (pstB) {Escherichia coli K12-MG1655} Length = 257 Score = 80.9 bits (198), Expect = 8e-017 Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 17/225 (7%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-----QPPSEGEI 68 +RN++F L ++L +VT IG +G GKSTLL+ + + +EGEI Sbjct: 13 VRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNKMFELYPEQRAEGEI 72 Query: 69 LLDAQPLESWSSK-AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADR-E 126 LLD + + S A R + Q P M++ + +A G + + AD E Sbjct: 73 LLDGDNILTNSQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE----KLSRADMDE 128 Query: 127 KVEEAISLVGL----KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 +V+ A++ L K H+ SLSGG++QR IA +A LLLDEP SALD Sbjct: 129 RVQWALTKAALWNETKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPIS 188 Query: 183 QVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 + L+ L Q+ TV+ V H++ AAR D+ + GE+I Sbjct: 189 TGRIEELITELKQD--YTVVIVTHNMQQAARCSDHTAFMYLGELI 231 >b3450 ATP-binding component of sn-glycerol 3-phosphate transport system (ugpC) {Escherichia coli K12-MG1655} Length = 369 Score = 80.5 bits (197), Expect = 1e-016 Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 9/215 (4%) Query: 23 GRT-LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 G+T ++ PL+L G+ ++G +G GKSTLL+M+ + +EG+I ++ Q + K Sbjct: 28 GKTQVIKPLTLDVADGEFIVMVGPSGCGKSTLLRMVAGLERVTEGDIWINDQRVTEMEPK 87 Query: 82 AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAAD-REKVEEAISLVGLKPL 140 R +A + Q M+V E +A W + G E+V+EA ++ L L Sbjct: 88 D--RGIAMVFQNYALYPHMSVEENMA-----WGLKIRGMGKQQIAERVKEAARILELDGL 140 Query: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200 R LSGG+RQR + + +D L DEP S LD +V + + +L + T Sbjct: 141 LKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDEPLSNLDAKLRVQMRLELQQLHRRLKTT 200 Query: 201 VIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 + V HD A ++ + GG GTP E+ Sbjct: 201 SLYVTHDQVEAMTLAQRVMVMNGGVAEQIGTPVEV 235 >b4228 putative ATP-binding component of a transport system (ytfR) {Escherichia coli K12-MG1655} Length = 417 Score = 79.0 bits (193), Expect = 3e-016 Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 13/231 (5%) Query: 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 PG L + + G++ L+G NG+GKSTL+K L G I L+ Q + S + Sbjct: 20 PGVKALDNVDFSLRRGEIMALLGENGAGKSTLIKALTGVYHADRGTIWLEGQAI-SPKNT 78 Query: 82 AFARK--VAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVE----EAISLV 135 A A++ + + Q++ M+V + + IGR P RFG R+++E E ++ Sbjct: 79 AHAQQLGIGTVYQEVNLLPNMSVADNLFIGREP-----KRFGLLRRKEMEKRATELMASY 133 Query: 136 GLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 G ++ S +Q I + ++ L+LDEPT++LD +V++L + R + Sbjct: 134 GFSLDVREPLNRFSVAMQQIVAICRAIDLSAKVLILDEPTASLD-TQEVELLFDLMRQLR 192 Query: 196 ERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYG 246 +RG+++I V H ++ + D + LR G + E+ + E ++M+ G Sbjct: 193 DRGVSLIFVTHFLDQVYQVSDRITVLRNGSFVGCRETCELPQIELVKMMLG 243 >b1858 putative ATP-binding component of a transport system (yebM) {Escherichia coli K12-MG1655} Length = 251 Score = 79.0 bits (193), Expect = 3e-016 Identities = 61/220 (27%), Positives = 104/220 (47%), Gaps = 21/220 (9%) Query: 13 ALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72 +L N+S R +L +SL GK+ L+G NG+GKSTL++++ P EG I + Sbjct: 6 SLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNG 65 Query: 73 QPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132 + ++ Y+PQ+L + + + R+ L +E + A+ Sbjct: 66 K-----------LRIGYVPQKLY----LDTTLPLTVNRF-----LRLRPGTHKEDILPAL 105 Query: 133 SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 V L + + LSGGE QR +A + + L+LDEPT +D+ QV + L+ + Sbjct: 106 KRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165 Query: 193 LSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232 L +E V+ V HD+++ D ++ L + GTP Sbjct: 166 LRRELDCGVLMVSHDLHLVMAKTDEVLCL-NHHICCSGTP 204 >b1318 putative ATP-binding component of a transport system (ycjV) {Escherichia coli K12-MG1655} Length = 322 Score = 79.0 bits (193), Expect = 3e-016 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 6/193 (3%) Query: 43 IGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV 102 +G +G GKST L+M+ + S G++L+D + + +KA R +A + Q MTV Sbjct: 36 VGPSGCGKSTTLRMIAGLEEISGGDLLIDGKRMNDVPAKA--RNIAMVFQNYALYPHMTV 93 Query: 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLV 162 + +A G A E+V A ++GL+ R +LSGG+RQR + + Sbjct: 94 YDNMAFGLKMQKIAKEVID----ERVNWAAQILGLREYLKRKPGALSGGQRQRVALGRAI 149 Query: 163 AQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR 222 +++ L+DEP S LD +V + A + +L Q+ T+I V HD A +V ++ Sbjct: 150 VREAGVFLMDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMK 209 Query: 223 GGEMIAQGTPAEI 235 G + G P + Sbjct: 210 DGIVQQVGAPKTV 222 >b2149 ATP-binding component of methyl-galactoside transport and galactose taxis (mglA) {Escherichia coli K12-MG1655} Length = 506 Score = 78.6 bits (192), Expect = 4e-016 Identities = 66/244 (27%), Positives = 116/244 (47%), Gaps = 19/244 (7%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 + I+ PG L ++L + L+G NG+GKSTLLK L G IL + Sbjct: 16 MSGINKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGK 75 Query: 74 PLESWSSK-AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI 132 ++ S+K A ++ + Q+L +V + + +GRYP G D++K+ Sbjct: 76 EIDFHSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMF-----VDQDKMYRET 130 Query: 133 SL------VGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186 + + P A V +LS + Q IA + +++ +++DEPTS+L +V+ Sbjct: 131 KAIFDELDIDIDPRAR--VGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNH 187 Query: 187 LALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMIYG 246 L + R +ERG ++ + H + + CD + LR G+ IA E + G T++ I Sbjct: 188 LFTIIRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIA----TEPLAGLTMDKIIA 243 Query: 247 IPMG 250 + +G Sbjct: 244 MMVG 247 >b3455 ATP-binding component of high-affinity branched-chain amino acid transport system (livG) {Escherichia coli K12-MG1655} Length = 255 Score = 77.0 bits (188), Expect = 1e-015 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 12/240 (5%) Query: 8 SDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE 67 S ++ + R G ++ ++L ++ LIG NG+GK+T+ L P+ G Sbjct: 2 SQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT 61 Query: 68 ILLDAQPLESWSSKAFARK-VAYLPQQLPPAEGMTVRELVAIGRYP------WHGALGR- 119 ILL Q LE + AR V Q + MTV E + + ++ + G L Sbjct: 62 ILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTP 121 Query: 120 -FGAADREKVEEA---ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPT 175 F A E ++ A + +GL A+R +L+ G+++R IA + L+LDEP Sbjct: 122 SFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEPA 181 Query: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 + L+ ++ L+ L T++ + HD+ + D + + G +A GTP +I Sbjct: 182 AGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEQI 241 >b0864 ATP-binding component of 3rd arginine transport system (artP) {Escherichia coli K12-MG1655} Length = 242 Score = 77.0 bits (188), Expect = 1e-015 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 10/210 (4%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE---SWSSKAF 83 L ++L P G+ L+G +G+GKS+LL++L + P G + + + + S KA Sbjct: 18 LFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAI 77 Query: 84 A---RKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140 R V + QQ +TV++ + G A EK+ E + L KP Sbjct: 78 RDLRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRL---KPY 134 Query: 141 AHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLT 200 + R LSGG++QR IA + + + LL DEPT+ALD +++++ L+ E +T Sbjct: 135 SDRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA-ETNIT 193 Query: 201 VIAVLHDINMAARYCDYLVALRGGEMIAQG 230 + V H++ +A + +V + G ++ QG Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQG 223 >b4035 ATP-binding component of transport system for maltose (malK) {Escherichia coli K12-MG1655} Length = 371 Score = 76.3 bits (186), Expect = 2e-015 Identities = 61/212 (28%), Positives = 92/212 (43%), Gaps = 18/212 (8%) Query: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL------DAQPLESWSSKAF 83 ++L G+ +G +G GKSTLL+M+ + + G++ + D P E F Sbjct: 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 Query: 84 ARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR 143 Y L AE M+ +A G ++V + ++ L L R Sbjct: 82 QSYALY--PHLSVAENMSFGLKLA----------GAKKEVINQRVNQVAEVLQLAHLLDR 129 Query: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 +LSGG+RQR I + + LLDEP S LD A +V + + RL + G T+I Sbjct: 130 KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 Query: 204 VLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 V HD A D +V L G + G P E+ Sbjct: 190 VTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221 >b0490 putative ATP-binding component of a transport system (ybbL) {Escherichia coli K12-MG1655} Length = 225 Score = 76.3 bits (186), Expect = 2e-015 Identities = 61/221 (27%), Positives = 112/221 (50%), Gaps = 21/221 (9%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 L+N+ + +L+ ++ + AG+ + G +G GKSTLLK++ P+ G +L + + Sbjct: 10 LQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69 Query: 74 PLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 + + + + ++V+Y Q P G TV + + +PW + + AI Sbjct: 70 DVSTLKPEIYRQQVSYCAQT-PTLFGDTVYDNLI---FPWQ--------IRNRQPDPAIF 117 Query: 134 LVGLKPLA------HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVL 187 L L+ A + + LSGGE+QR + + + LLLDE TSALD +++ +V Sbjct: 118 LDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 Query: 188 ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR--GGEM 226 ++HR +E+ + V+ V HD + + D ++ L+ GEM Sbjct: 178 EMIHRYVREQNIAVLWVTHDKD-EINHADKVITLQPHAGEM 217 >b0829 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 612 Score = 75.1 bits (183), Expect = 5e-015 Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 16/222 (7%) Query: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE---------SWSS 80 LS + G+ ++G +GSGKS L R + G + D L+ S + Sbjct: 24 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQN 83 Query: 81 KAFARKVAYLPQQLPPAEGMT-------VRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 A R V + E MT V E +A A + +++ + + Sbjct: 84 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVR 143 Query: 134 LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 + + + R LSGG RQR IAM ++ L+ DEPT+ALD+ Q +L L+ L Sbjct: 144 IPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 203 Query: 194 SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 +E + VI + HD+ + A D ++ + GE + GT +I Sbjct: 204 QKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQI 245 Score = 70.9 bits (172), Expect = 9e-014 Identities = 58/201 (28%), Positives = 99/201 (49%), Gaps = 11/201 (5%) Query: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS---KAFARKVAYLPQQ 93 G+ L+G +GSGKST + L R GEI+ + Q +++ S +A R + ++ Q Sbjct: 339 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 398 Query: 94 LPPAEGMTVRELVA---IGRYPWHGALGRFGAADREKVEEAISLVGLKPL-AHRLVDSLS 149 P + R+ + I HG L AA R V + VGL P A R S Sbjct: 399 --PYASLDPRQTIGDSIIEPLRVHGLLPGKDAAAR--VAWLLERVGLLPEHAWRYPHEFS 454 Query: 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 GG+RQR IA +A + + ++ DE SALD++ + ++ L+ L ++ G+ + + HD+ Sbjct: 455 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA 514 Query: 210 MAARYCDYLVALRGGEMIAQG 230 + R + + G+++ G Sbjct: 515 VVERISHRVAVMYLGQIVEIG 535 >b4097 ATP-binding component of phosphonate transport (phnK) {Escherichia coli K12-MG1655} Length = 252 Score = 74.7 bits (182), Expect = 6e-015 Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 18/211 (8%) Query: 37 GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR--KVAYLPQQL 94 G+V G++G +GSGK+T LK + P +GEI + + L + S R + + Sbjct: 31 GEVLGIVGESGSGKTTQLKSISARLTPQQGEIHYENRSLYAMSEADRRRLLRTEWGVVHQ 90 Query: 95 PPAEGMTVRELVAIG----RYPWHGA--LGRFGAADREKVEEAISLVGLKPLAHRLVD-- 146 P +G+ R++ A G R GA G A ++ +EE ++ A+R+ D Sbjct: 91 HPLDGLR-RQVSAGGNIGERLMATGARHYGDIRATAQKWLEE------VEIPANRIDDLP 143 Query: 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVL 205 + SGG +QR IA + + + +DEPT LD++ Q +L L+ L E L V+ V Sbjct: 144 TTFSGGMQQRLQIARNLVTHPKLVFMDEPTGGLDVSVQARLLDLLRGLVVELNLAVVIVT 203 Query: 206 HDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 HD+ +A D L+ ++ G+++ G ++ Sbjct: 204 HDLGVARLLADRLLVMKQGQVVESGLTDRVL 234 >b1441 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 337 Score = 73.9 bits (180), Expect = 1e-014 Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 7/212 (3%) Query: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 +S+ G+ ++G +GSGK+T L+++ + S G I + +P + + R V Sbjct: 23 VSIAIKDGEFFSMLGPSGSGKTTCLRLIAGFEQLSGGAISIFGKPASNLPP--WERDVNT 80 Query: 90 LPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLS 149 + Q M++ + VA G G +EA+ V L + R LS Sbjct: 81 VFQDYALFPHMSILDNVAYGLM----VKGVNKKQRHAMAQEALEKVALGFVHQRKPSQLS 136 Query: 150 GGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN 209 GG+RQR IA + + R LLLDEP ALD+ + + + +L Q G+T I V HD Sbjct: 137 GGQRQRVAIARALVNEPRVLLLDEPLGALDLKLREQMQLELKKLQQSLGITFIFVTHDQG 196 Query: 210 MAARYCDYLVALRGGEMIAQGTPAEI-MRGET 240 A D + G + +P ++ MR T Sbjct: 197 EALSMSDRVAVFNNGRIEQVDSPRDLYMRPRT 228 >b3541 putative ATP-binding component of dipeptide transport system (dppD) {Escherichia coli K12-MG1655} Length = 327 Score = 73.6 bits (179), Expect = 1e-014 Identities = 58/218 (26%), Positives = 105/218 (48%), Gaps = 24/218 (11%) Query: 30 LSLTFPAGKVTGLIGHNGSGKS-TLLKMLGRHQPPSE---GEILLDAQPLESWSSKA--- 82 +S + G+V G++G +GSGKS + L ++G P ++ + Q L+ S K Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85 Query: 83 -FARKVAYLPQQ----LPPAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV 135 +VA + Q L P G + E + + + G + R++ + ++ V Sbjct: 86 LVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ-------GGNKSTRRQRAIDLLNQV 138 Query: 136 GLKPLAHRL---VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 G+ A RL LSGG QR IAM +A + L+ DEPT+ALD+ Q ++ L+ Sbjct: 139 GIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE 198 Query: 193 LSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 L Q+ + ++ + HD+ + A ++ + G+++ G Sbjct: 199 LQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 >b3271 putative ATP-binding component of a transport system (yhdZ) {Escherichia coli K12-MG1655} Length = 252 Score = 73.2 bits (178), Expect = 2e-014 Identities = 57/211 (27%), Positives = 101/211 (47%), Gaps = 6/211 (2%) Query: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLES--WSSKAF 83 +L ++LT G+ L G +GSGKST ++ + + +G I++D L + + Sbjct: 27 VLKNINLTVQPGERIVLCGPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERV 86 Query: 84 ARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR 143 ++V + Q +TV + + W + + A D + V + AH+ Sbjct: 87 RQEVGMVFQHFNLFPHLTVLQNCTLAPI-WVRKMPKKEAEDL--AVHYLERVRIAEHAHK 143 Query: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 +SGG++QR IA + + +L DEPTSALD +VL + L+Q G+T++ Sbjct: 144 FPGQISGGQQQRVAIARSLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQS-GMTMLC 202 Query: 204 VLHDINMAARYCDYLVALRGGEMIAQGTPAE 234 V H++ A D ++ + GE++ Q P E Sbjct: 203 VTHEMGFARTVADRVIFMDRGEIVEQAAPDE 233 >b0887 ATP-binding component of cytochrome-related transport, Zn sensitive (cydD) {Escherichia coli K12-MG1655} Length = 588 Score = 72.8 bits (177), Expect = 2e-014 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 12/217 (5%) Query: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 G+TL PL+ T PAG+ L+G +GSGKS+LL L +G + ++ L S ++ Sbjct: 362 GKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFL-SYQGSLRINGIELRDLSPES 420 Query: 83 FARKVAYLPQ--QLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV--GLK 138 + + ++++ Q QLP A T+R+ V + R P A D V E + L+ G+ Sbjct: 421 WRKHLSWVGQNPQLPAA---TLRDNVLLAR-PDASEQELQAALDNAWVSEFLPLLPQGVD 476 Query: 139 PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG 198 LS G+ QR +A + LLLDEP ++LD + V+ ++ S + Sbjct: 477 TPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQ- 535 Query: 199 LTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEI 235 T + V H + A + D + ++ G +I QG AE+ Sbjct: 536 -TTLMVTHQLEDLADW-DVIWVMQDGRIIEQGRYAEL 570 >b1246 homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system (oppD) {Escherichia coli K12-MG1655} Length = 337 Score = 72.0 bits (175), Expect = 4e-014 Identities = 66/272 (24%), Positives = 115/272 (42%), Gaps = 49/272 (18%) Query: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKS-TLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 T ++ L+ + AG+ G++G +GSGKS T ++G LL A S+ Sbjct: 37 TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMG----------LLAANGRIGGSATFN 86 Query: 84 ARKVAYLPQQ-----------LPPAEGMT-VRELVAIGRYPWHGALGRFGAADREKVEEA 131 R++ LP+ + + MT + + +G + + E EE+ Sbjct: 87 GREILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEES 146 Query: 132 ISLVGL--KPLAHRLVD----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVD 185 + ++ P A + + SGG RQR IAM + + L+ DEPT+ALD+ Q Sbjct: 147 VRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQ 206 Query: 186 VLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM--------- 236 ++ L++ L +E +I + HD+ + A CD ++ + G + G ++ Sbjct: 207 IMTLLNELKREFNTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSI 266 Query: 237 -----------RGETLEMIYGIPMGILPHPAG 257 GET+ I G P +L P G Sbjct: 267 GLLNAVPRLDAEGETMLTIPGNPPNLLRLPKG 298 >b0820 putative ATP-binding component of a transport system (ybiT) {Escherichia coli K12-MG1655} Length = 530 Score = 72.0 bits (175), Expect = 4e-014 Identities = 69/253 (27%), Positives = 106/253 (41%), Gaps = 41/253 (16%) Query: 16 NISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL 75 N++ + + L +S+ F G GLIG NGSGKST +K+LG P+ G + LD Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNVSLDPNER 65 Query: 76 -------------------------ESWSSKAFARKVAYLPQQLPPAEGMTVREL-VAIG 109 E W K ++ LP+ + +G V +L V G Sbjct: 66 IGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPE-MSEEDGYKVADLEVKYG 124 Query: 110 RYPWHGALGRFGAADREKVEEAISLVGLKPLAHR-LVDSLSGGERQRAWIAMLVAQDSRC 168 + A R G E + VG+ H + ++ G + R +A + D Sbjct: 125 EMDGYSAEARAG--------ELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDI 176 Query: 169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM-I 227 LLLDEPT+ LDI D + + ++ ER T+I + HD + C ++ L GE+ + Sbjct: 177 LLLDEPTNNLDI----DTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRV 232 Query: 228 AQGTPAEIMRGET 240 G E M T Sbjct: 233 YPGNYDEYMTAAT 245 Score = 47.4 bits (111), Expect = 1e-006 Identities = 53/186 (28%), Positives = 79/186 (42%), Gaps = 29/186 (15%) Query: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFAR 85 L L+L G+ ++G NG GKSTLLK L P G + WS A Sbjct: 334 LFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTV--------KWSENA--- 382 Query: 86 KVAYLPQ--QLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAI--SLVGLKPLA 141 ++ Y Q + +TV + W + G D E+ +I L+ + Sbjct: 383 RIGYYAQDHEYEFENDLTV--------FEWMSQWKQEG--DDEQAVRSILGRLLFSQDDI 432 Query: 142 HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTV 201 + LSGGE+ R L+ Q L++DEPT+ LD+ ++ L + L Q T+ Sbjct: 433 KKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDM-ESIESLNMALELYQG---TL 488 Query: 202 IAVLHD 207 I V HD Sbjct: 489 IFVSHD 494 >b2211 putative ATP-binding component of a transport system (yojI) {Escherichia coli K12-MG1655} Length = 547 Score = 70.5 bits (171), Expect = 1e-013 Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 24/223 (10%) Query: 11 TFALRNISFRVPGRTL-LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEIL 69 T LRN++F + P++LT G++ LIG NGSGKSTL +L P GEIL Sbjct: 322 TLELRNVTFAYQDNAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 Query: 70 LDAQPLESWSSKAFARKVA------YLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAA 123 LD +P+ + + + + +L QL EG + W L + A Sbjct: 382 LDGKPVSGEQPEDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLV---EKW---LAQLKMA 435 Query: 124 DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQ 183 + ++ +V LK LS G+++R + + +A++ +LLDE + D + Sbjct: 436 HKLELSNG-RIVNLK---------LSKGQKKRVALLLALAEERDIILLDEWAADQDPHFR 485 Query: 184 VDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 + ++ L QE G T+ A+ HD + + D L+ +R G++ Sbjct: 486 REFYQVLLPLMQEMGKTIFAISHDDHYFI-HADRLLEMRNGQL 527 >b4391 putative ATP-binding component of a transport system (yjjK) {Escherichia coli K12-MG1655} Length = 555 Score = 70.1 bits (170), Expect = 1e-013 Identities = 71/237 (29%), Positives = 105/237 (44%), Gaps = 46/237 (19%) Query: 22 PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSK 81 P R +L +SL+F G G++G NG+GKSTLL+++ EGE A+P Sbjct: 17 PKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGE----ARPQPD---- 68 Query: 82 AFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFG----------------AADR 125 K+ YLPQ+ TVRE + AL R AA++ Sbjct: 69 ---IKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFDKLAAEQ 125 Query: 126 EKVEEAISL-------VGLKPLAHRL--------VDSLSGGERQRAWIAMLVAQDSRCLL 170 ++EE I V L+ A L + +LSGGER+R + L+ + LL Sbjct: 126 GRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLL 185 Query: 171 LDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 LDEPT+ LD + +A + R + TV+A+ HD +++ L GE I Sbjct: 186 LDEPTNHLD----AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGI 238 Score = 63.9 bits (154), Expect = 1e-011 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 15/172 (8%) Query: 9 DTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68 D + N+ R L+ LS + P G + G+IG NG+GKSTL +M+ + P G I Sbjct: 321 DKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTI 380 Query: 69 LLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKV 128 L + ++ S F + G + P +GRF ++ Sbjct: 381 TL-GETVKLASVDQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQ- 438 Query: 129 EEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 + V LSGGER R +A L+ LLLDEPT+ LDI Sbjct: 439 -------------GKRVGELSGGERGRLHLAKLLQVGGNMLLLDEPTNDLDI 477 >b1513 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 511 Score = 68.9 bits (167), Expect = 3e-013 Identities = 52/231 (22%), Positives = 107/231 (46%), Gaps = 10/231 (4%) Query: 15 RNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74 R++ + G +L + T G+V L+G NG+GKSTL+K++ P G + ++ Sbjct: 15 RSVYKQYSGVNVLKGIDFTLHQGEVHALLGGNGAGKSTLMKIIAGITPADSGTLEIEGNN 74 Query: 75 -LESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133 + A + +PQ+ ++++E + G ++ +K++ ++ Sbjct: 75 YVRLTPVHAHQLGIYLVPQEPLLFPSLSIKENILFGLAKKQLSM--------QKMKNLLA 126 Query: 134 LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 +G + H L SL +RQ I + +DSR L+LDEPT++L A + + + L Sbjct: 127 ALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSRILILDEPTASLTPAETERLFSRLQEL 186 Query: 194 SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETLEMI 244 G+ ++ + H + + D + +R G + G +E+ + ++ I Sbjct: 187 -LATGVGIVFISHKLPEIRQIADRISVMRDGTIALSGKTSELSTDDIIQAI 236 Score = 57.8 bits (138), Expect = 8e-010 Identities = 51/219 (23%), Positives = 102/219 (46%), Gaps = 11/219 (5%) Query: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-KAFARKVA 88 +SLT AG++ GL G G+G++ L + L + G I+L+ + + S+ + R + Sbjct: 282 VSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGERLLRGLV 341 Query: 89 YLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGA------ADREKVEEAISLVGLKPLAH 142 YLP+ + G+ + +A L F A A E+ A+++ +P Sbjct: 342 YLPEDRQ-SSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRALNIKFNQP--E 398 Query: 143 RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVI 202 + +LSGG +Q+ IA + + L++DEPT +D++ + D+ L+ ++ + + V+ Sbjct: 399 QAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIAAQ-NVAVL 457 Query: 203 AVLHDINMAARYCDYLVALRGGEMIAQGTPAEIMRGETL 241 + D+ D + + GE+ + ET+ Sbjct: 458 LISSDLEEIELMADRVYVMHQGEITHSALTERDINVETI 496 >b1291 putative ATP-binding protein of peptide transport system (sapD) {Escherichia coli K12-MG1655} Length = 330 Score = 68.6 bits (166), Expect = 4e-013 Identities = 57/223 (25%), Positives = 106/223 (47%), Gaps = 17/223 (7%) Query: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKML----GRHQPPSEGEILLDAQPLESWSSKAFAR 85 +S+T G++ GL+G +GSGKS + K + + + + D L S++ + Sbjct: 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRK 85 Query: 86 KVAYL-------PQQ-LPPAEGMTVRELVAIGRYPWHGALG-RFGAADREKVEEAISLVG 136 V + PQ L P+E + + + I + + G RFG R +E + VG Sbjct: 86 LVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIE-LLHRVG 144 Query: 137 LKPLAHRLVD---SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 +K + L+ GE Q+ IA+ +A R L+ DEPT++++ Q + L+ RL Sbjct: 145 IKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRL 204 Query: 194 SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEIM 236 +Q T++ + HD+ M +++ D + L G+ + E++ Sbjct: 205 NQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247 >b0127 putative ATP-binding component of a transport system (yadG) {Escherichia coli K12-MG1655} Length = 308 Score = 66.6 bits (161), Expect = 2e-012 Identities = 53/205 (25%), Positives = 99/205 (48%), Gaps = 6/205 (2%) Query: 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKA 82 G L + L AG L+G NG+GKST + ++ + G + + LE A Sbjct: 17 GVQALRGIDLQVEAGDFYALLGPNGAGKSTTIGIISSLVNKTSGRVSVFGYDLEKDVVNA 76 Query: 83 FARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAH 142 R++ +PQ+ TV+++V + + ++G + EK + + L G + Sbjct: 77 -KRQLGLVPQEFNFNPFETVQQIV-VNQAGYYGVERKEAYIRSEKYLKQLDLWGKRNERA 134 Query: 143 RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVI 202 R+ LSGG ++R IA + + + L+LDEPT+ +DI + + + L+ ++G T+I Sbjct: 135 RM---LSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWGFLKDLN-DKGTTII 190 Query: 203 AVLHDINMAARYCDYLVALRGGEMI 227 H + A C + ++ GE++ Sbjct: 191 LTTHYLEEAEMLCRNIGIIQHGELV 215 >b4096 ATP-binding component of phosphonate transport (phnL) {Escherichia coli K12-MG1655} Length = 226 Score = 66.2 bits (160), Expect = 2e-012 Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 17/211 (8%) Query: 6 NHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSE 65 N S T + R+P +L+ SLT AG+ L GH+GSGKSTLL+ L + P E Sbjct: 6 NVSKTFILHQQNGVRLP---VLNRASLTVNAGECVVLHGHSGSGKSTLLRSLYANYLPDE 62 Query: 66 GEILLDAQPLESWSS--KAFARKVAYLPQQLPPAEGMTVRELVAIGRYPW-------HGA 116 G+I + + W A ARKV + + +R + I G Sbjct: 63 GQIQIKHG--DEWVDLVTAPARKVVEIRKTTVGWVSQFLRVIPRISALEVVMQPLLDTGV 120 Query: 117 LGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 AA ++ +++ + L H + SGGE+QR IA D LLLDEPT+ Sbjct: 121 PREACAAKAARLLTRLNVP--ERLWHLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTA 178 Query: 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 +LD + V+ L+ R ++ RG ++ + HD Sbjct: 179 SLDAKNSAAVVELI-REAKTRGAAIVGIFHD 208 >b1756 putative ATP-binding component of a transport system {Escherichia coli K12-MG1655} Length = 217 Score = 65.9 bits (159), Expect = 3e-012 Identities = 56/198 (28%), Positives = 94/198 (47%), Gaps = 10/198 (5%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGR--HQPPSEGEILL 70 ++N+S R+P LL ++ T G + L+G +G GKSTL M+G Q GE+ L Sbjct: 4 VKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLFSWMIGALAEQFSCTGELWL 63 Query: 71 DAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130 + Q ++ + R++ L Q + +V + + + G A R V + Sbjct: 64 NEQRIDILPTAQ--RQIGILFQDALLFDQFSVGQNLLLAL-----PATLKGNARRNAVND 116 Query: 131 AISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALV 190 A+ GL+ H+ +LSGG+R R + + + LLLDEP S LD+A + + V Sbjct: 117 ALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDNFRQWV 176 Query: 191 HRLSQERGLTVIAVLHDI 208 + + V+ V HD+ Sbjct: 177 FSEVRALAIPVVQVTHDL 194 >b2201 ATP binding protein of heme exporter A (ccmA) {Escherichia coli K12-MG1655} Length = 205 Score = 65.5 bits (158), Expect = 4e-012 Identities = 60/191 (31%), Positives = 96/191 (50%), Gaps = 17/191 (8%) Query: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 RTL LS T AG+ + G NG+GK+TLL++L P GE+L QPL ++ Sbjct: 14 RTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ-VRDSY 72 Query: 84 ARKVAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHR 143 + + ++ Q G+ R L A+ ++ G D + EA++ GL Sbjct: 73 HQNLLWIGHQ----PGIKTR-LTALENLHFYHRDG-----DTAQCLEALAQAGLAGFEDI 122 Query: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ--ERGLTV 201 V+ LS G+++R +A L + +LDEP +A+D+ + VD L R++Q E+G V Sbjct: 123 PVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDV-NGVD--RLTQRMAQHTEQGGIV 179 Query: 202 IAVLHD-INMA 211 I H +N+A Sbjct: 180 ILTTHQPLNVA 190 >b0949 putative ATP-binding component of a transport system (uup) {Escherichia coli K12-MG1655} Length = 635 Score = 62.0 bits (149), Expect = 4e-011 Identities = 65/211 (30%), Positives = 95/211 (45%), Gaps = 27/211 (12%) Query: 1 MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLK-MLGR 59 ++E + F + ++ ++V G+ L+ S G LIG NG GK+TLLK MLG+ Sbjct: 309 VEEASRSGKIVFEMEDVCYQVNGKQLVKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQ 368 Query: 60 HQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ---QLPPAEGMTVRELVAIGRYPWHGA 116 Q S G I + + +VAY Q +L P + TV + +A G+ Sbjct: 369 LQADS-GRIHVGTK-----------LEVAYFDQHRAELDPDK--TVMDNLAEGKQEV--- 411 Query: 117 LGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS 176 R + + A V +LSGGER R +A L + S L+LDEPT+ Sbjct: 412 --MVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLLLARLFLKPSNLLILDEPTN 469 Query: 177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 LD V+ L L+ L TV+ V HD Sbjct: 470 DLD----VETLELLEELIDSYQGTVLLVSHD 496 Score = 55.8 bits (133), Expect = 3e-009 Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 47/216 (21%) Query: 42 LIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMT 101 L+G NG+GKSTL+K+L R Q +G I+ + + VA L Q P + Sbjct: 34 LVGRNGAGKSTLMKILNREQGLDDGRIIYEQDLI-----------VARLQQDPPRNVEGS 82 Query: 102 VRELVAIGRYPWHGALGRFGAADR------------------------------EKVEEA 131 V + VA G L R+ R ++ E Sbjct: 83 VYDFVAEGIEEQAEYLKRYHDISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEV 142 Query: 132 ISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVH 191 ++ +GL P + + SLSGG ++A + + + R LLLDEPT+ LDI + + + Sbjct: 143 LAQLGLDP--NVALSSLSGGWLRKAALGRALVSNPRVLLLDEPTNHLDI----ETIDWLE 196 Query: 192 RLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227 + T+I + HD + +V L G+++ Sbjct: 197 GFLKTFNGTIIFISHDRSFIRNMATRIVDLDRGKLV 232 >b0448 ATP-binding component of a transport system (mdlA) {Escherichia coli K12-MG1655} Length = 590 Score = 61.6 bits (148), Expect = 5e-011 Identities = 58/211 (27%), Positives = 93/211 (44%), Gaps = 30/211 (14%) Query: 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 L ++ G++ G+ G GSGKSTLL ++ RH SEG+I PL ++ + Sbjct: 352 LENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSR 411 Query: 87 VAYLPQQLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD 146 +A + Q P TV +A+G A ++++E L + RL Sbjct: 412 LAVV-SQTPFLFSDTVANNIALG----------CPNATQQEIEHVARLASVHDDILRLPQ 460 Query: 147 S-----------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALD--IAHQVDVLALVHRL 193 LSGG++QR IA + ++ L+LD+ SA+D HQ+ +H L Sbjct: 461 GYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQI-----LHNL 515 Query: 194 SQ-ERGLTVIAVLHDINMAARYCDYLVALRG 223 Q +G TVI H ++ + +V G Sbjct: 516 RQWGQGRTVIISAHRLSALTEASEIIVMQHG 546 >b3352 putative ATP-binding component of a transport system (yheS) {Escherichia coli K12-MG1655} Length = 637 Score = 59.7 bits (143), Expect = 2e-010 Identities = 63/215 (29%), Positives = 89/215 (41%), Gaps = 38/215 (17%) Query: 14 LRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73 + +S R +L + L G GL+G NG+GKSTL+K+L P GEI L Sbjct: 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL--- 371 Query: 74 PLESWSSKAFARKVAYLPQ---QLPPAEGMTVRELVAIG----RYPWHGALGRFGAADRE 126 A K+ Y Q + A+ ++ L + LG FG + Sbjct: 372 --------AKGIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKLRDYLGGFGFQGDK 423 Query: 127 KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186 EE SGGE+ R +A++V Q LLLDEPT+ LD+ + Sbjct: 424 VTEE--------------TRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMR--- 466 Query: 187 LALVHRLSQERGLTVIAVLHDINMAARYCD--YLV 219 AL L + G V+ V HD ++ D YLV Sbjct: 467 QALTEALIEFEGALVV-VSHDRHLLRSTTDDLYLV 500 >b0760 ATP-binding component of molybdate transport system (modF) {Escherichia coli K12-MG1655} Length = 490 Score = 54.3 bits (129), Expect = 8e-009 Identities = 61/245 (24%), Positives = 95/245 (38%), Gaps = 36/245 (14%) Query: 18 SFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGE--------IL 69 +FR+ L LT AG +G NGSGKS L + L P +GE Sbjct: 10 TFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITR 69 Query: 70 LDAQPLESWSSKAFARKVAYLPQQLPPAE---GMTVRELVAIGRYPWHGALGRFGAADRE 126 L + L+ S + R L P E G T E++ + D Sbjct: 70 LSFEQLQKLVSDEWQRNNT---DMLGPGEDDTGRTTAEII------------QDEVKDAP 114 Query: 127 KVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDV 186 + + G+ L R LS GE ++ + + + L+LDEP LD+A + + Sbjct: 115 RCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 Query: 187 LALVHRLSQERGLTVIAVLHD-------INMAARYCDYLVALRGG--EMIAQGTPAEIMR 237 + L Q G+T++ VL+ + A D +A G E++ Q A++ Sbjct: 175 AERLASLHQS-GITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAH 233 Query: 238 GETLE 242 E LE Sbjct: 234 SEQLE 238 Score = 49.7 bits (117), Expect = 2e-007 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 11/191 (5%) Query: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLES----W 78 R +L+ LS G+ ++G NG+GKSTLL ++ G H ++ L + S W Sbjct: 273 RPILNNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIW 332 Query: 79 SSKAFARKVAYLPQ--QLPPAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVG 136 K + + Y+ L TVR ++ G + G ++ V++ + ++G Sbjct: 333 DIK---KHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILG 389 Query: 137 L-KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195 + K A SLS G+++ A I + + L+LDEP LD ++ + V L Sbjct: 390 IDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLIS 449 Query: 196 ERGLTVIAVLH 206 E ++ V H Sbjct: 450 EGETQLLFVSH 460 >b1682 putative ATP-binding component of a transport system (ynhD) {Escherichia coli K12-MG1655} Length = 248 Score = 51.6 bits (122), Expect = 5e-008 Identities = 61/230 (26%), Positives = 99/230 (43%), Gaps = 16/230 (6%) Query: 13 ALRNISFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--------PS 64 +++++ V + +L LSL G+V ++G NGSGKSTL L + Sbjct: 3 SIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 62 Query: 65 EGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTVRE--LVAIGRYPWHGALGRFGA 122 +G+ LL P E + + Y P ++P + L A+ Y L RF Sbjct: 63 KGKDLLALSP-EDRAGEGIFMAFQY-PVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDF 120 Query: 123 ADREKVEEAISLVGL-KPLAHRLVD-SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 D +EE I+L+ + + L R V+ SGGE++R I + + +LDE S LDI Sbjct: 121 QD--LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178 Query: 181 AHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 V V+ L + +I + + DY+ L G ++ G Sbjct: 179 DALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 >b4058 excision nuclease subunit A (uvrA) {Escherichia coli K12-MG1655} Length = 940 Score = 47.8 bits (112), Expect = 8e-007 Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 11/102 (10%) Query: 147 SLSGGERQRAWIAMLVAQ---DSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203 +LSGGE QR +A +++ +LDEPT+ L A +L ++H+L +++G T++ Sbjct: 829 TLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKL-RDQGNTIVV 887 Query: 204 VLHDINMAARYCDYLVAL------RGGEMIAQGTPAEIMRGE 239 + H++++ + D++V L GGE++ GTP + E Sbjct: 888 IEHNLDV-IKTADWIVDLGPEGGSGGGEILVSGTPETVAECE 928 Query= Z0163 hydroxamate-dependent iron uptake, cytoplasmic membrane component (fhuD) {Escherichia coli O157:H7 EDL933} (296 letters) Score E Sequences producing significant alignments: (bits) Value b0152 hydroxamate-dependent iron uptake, cytoplasmic membrane co... 564 e-162 >b0152 hydroxamate-dependent iron uptake, cytoplasmic membrane component (fhuD) {Escherichia coli K12-MG1655} Length = 296 Score = 564 bits (1454), Expect = e-162 Identities = 280/296 (94%), Positives = 281/296 (94%) Query: 1 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIXXXXXXXXXXXXXXGIVPYGVA 60 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRI GIVPYGVA Sbjct: 1 MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVA 60 Query: 61 DTINYRLWVSEPPLPESVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120 DTINYRLWVSEPPLP+SVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR Sbjct: 61 DTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGR 120 Query: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMNPRFVKRGARPLLLT 180 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSM PRFVKRGARPLLLT Sbjct: 121 GFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLT 180 Query: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH Sbjct: 181 TLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDH 240 Query: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA Sbjct: 241 DNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA 296 Query= Z0164 hydroxamate-dependent iron uptake, cytoplasmic membrane component (fhuB) {Escherichia coli O157:H7 EDL933} (660 letters) Score E Sequences producing significant alignments: (bits) Value b0153 hydroxamate-dependent iron uptake, cytoplasmic membrane co... 989 0.0 b4289 citrate-dependent iron(III) transport protein, cytosolic (... 146 5e-036 b4288 citrate-dependent iron transport, membrane-bound protein (... 144 2e-035 b0589 ferric enterobactin transport protein (fepG) {Escherichia ... 144 2e-035 b0590 ferric enterobactin (enterochelin) transport (fepD) {Esche... 133 4e-032 b1711 vitamin B12 transport permease protein (btuC) {Escherichia... 127 2e-030 >b0153 hydroxamate-dependent iron uptake, cytoplasmic membrane component (fhuB) {Escherichia coli K12-MG1655} Length = 660 Score = 989 bits (2558), Expect = 0.0 Identities = 521/660 (78%), Positives = 523/660 (79%) Query: 1 MSKRIXXXXXXXXXXXXXXXXXXTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP 60 MSKRI TWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP Sbjct: 1 MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSPDIDVIEQMIFHYSLLP 60 Query: 61 RLAISXXXXXXXXXXXXXXXXXXRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA 120 RLAIS RNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA Sbjct: 61 RLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFA 120 Query: 121 ALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST 180 A AGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST Sbjct: 121 AQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWST 180 Query: 181 GTLTQTDWGGVERLWPQXXXXXXXXXXXXXXXXXXXXDDGVXXXXXXXXXXXXXXXXXXX 240 GTLTQTDWGGVERLWPQ DDGV Sbjct: 181 GTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLDDGVARNLGLALSLARLAALSLA 240 Query: 241 XXXXXXXXNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR 300 NAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR Sbjct: 241 IVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPRLMLASLIGALILWLSDQIILWLTR 300 Query: 301 VWMEVSTGSVTXXXXXXXXXXXXXXXXXXXAPDMKVNDRVAAERQHXXXXXXXXXXXXXX 360 VWMEVSTGSVT APDMKVNDRVAAERQH Sbjct: 301 VWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDMKVNDRVAAERQHVLAFALAGGVLLLM 360 Query: 361 XXXXXXSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA 420 SFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA Sbjct: 361 AVVVALSFGRDAHGWTWASGALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMA 420 Query: 421 SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSIGAAVTLLIIMIAAGRGGFSPHRML 480 SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGS+GAAVTLLIIMIAAGRGGFSPHRML Sbjct: 421 SPEVLGISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAVTLLIIMIAAGRGGFSPHRML 480 Query: 481 LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL 540 LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL Sbjct: 481 LAGMALSTAFTMLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPL 540 Query: 541 CRRWLTILPLGGDTARAVGVALTPTRIXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIARM 600 CRRWLTILPLGGDTARAVG+ALTPTRI MTIGPLSFVGLMAPHIARM Sbjct: 541 CRRWLTILPLGGDTARAVGMALTPTRIALLLLAACLTATATMTIGPLSFVGLMAPHIARM 600 Query: 601 MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660 MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR Sbjct: 601 MGFRRTMPHIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660 >b4289 citrate-dependent iron(III) transport protein, cytosolic (fecC) {Escherichia coli K12-MG1655} Length = 332 Score = 146 bits (368), Expect = 5e-036 Identities = 101/290 (34%), Positives = 153/290 (52%), Gaps = 24/290 (8%) Query: 381 ALLEDLMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLF 440 AL+++L R PR + A+ G LA+AG ++Q LT NPMASP +LGI+SGAA + L Sbjct: 54 ALVQNL---RLPRSLVAVLIGASLALAGTLLQTLTHNPMASPSLLGINSGAALAMALTSA 110 Query: 441 LVPGNAFGWLLP-AGSIGAAVTLLIIMIAAG--RGGFSPHRMLLAGMALS------TAFT 491 L P G+ L + G V+ L++M A G R ++++LAG+ALS T T Sbjct: 111 LSPTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRHTHDRNKLILAGIALSAFCMGLTRIT 170 Query: 492 MLLMMLQASGDPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLG 551 +LL A G + W++G +A VW+ V+V + + L L +L L Sbjct: 171 LLLAEDHAYG------IFYWLAGGVSHARWQDVWQLLPVVVTAVPVVLLLANQLNLLNLS 224 Query: 552 GDTARAVGVALTPTRIXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIARM-MGF--RRTMP 608 TA +GV LT R+ GP++F+GL+ PH+AR GF R +P Sbjct: 225 DSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGLLVPHLARFWAGFDQRNVLP 284 Query: 609 HIVISALVGGLLLVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQ 658 +S L+G L++ AD R + FP +PAG + IG+P F++L+R++ Sbjct: 285 ---VSMLLGATLMLLADVLARALAFPGDLPAGAVLALIGSPCFVWLVRRR 331 Score = 59.3 bits (142), Expect = 8e-010 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 12/216 (5%) Query: 85 NPLAEPTTLGVATGAQLGITVTTLWAIPGAMAS---QFAALAGACVVGLIVFGVAWGKRL 141 NP+A P+ LG+ +GA L + +T+ + P +A F A G V L+V G R Sbjct: 87 NPMASPSLLGINSGAALAMALTSALS-PTPIAGYSLSFIAACGGGVSWLLVMTAGGGFRH 145 Query: 142 SPVT--LILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQXX 199 + LILAG+ +S +C + ++ ++ D +F W G ++ W V +L P Sbjct: 146 THDRNKLILAGIALSAFCMGLTRITLLLAEDHAYGIFYWLAGGVSHARWQDVWQLLPVVV 205 Query: 200 XXXXXXXXXXXXXXXXXXDDGVXXXXXXXXXXXXXXXXXXXXXXXXXXXNAVGIIGFIGL 259 D + G + FIGL Sbjct: 206 TAVPVVLLLANQLNLLNLSDSTAHTLGVNLTRLRLVINMLVLLLVGACVSVAGPVAFIGL 265 Query: 260 FAPLLAKM---LGARRLLPRLMLASLIGALILWLSD 292 P LA+ R +LP ++ L+GA ++ L+D Sbjct: 266 LVPHLARFWAGFDQRNVLP---VSMLLGATLMLLAD 298 >b4288 citrate-dependent iron transport, membrane-bound protein (fecD) {Escherichia coli K12-MG1655} Length = 318 Score = 144 bits (363), Expect = 2e-035 Identities = 94/271 (34%), Positives = 144/271 (53%), Gaps = 4/271 (1%) Query: 386 LMPWRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGN 445 LM +R PR++ ALF G LAVAG +IQ + NP+ASP++LG++ A+ V L L+P Sbjct: 47 LMEYRLPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLASVGALLLMPSL 106 Query: 446 AFGWL-LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPR 504 L L A + G A +L+ M+A P ++ L G+ALS + L L S Sbjct: 107 PVMVLPLLAFAGGMAGLILLKMLAKTH---QPMKLALTGVALSACWASLTDYLMLSRPQD 163 Query: 505 MAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGVALTP 564 + L W++GS + + V +M++ L ++ R L +L LG A +GV++ Sbjct: 164 VNNALLWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPH 223 Query: 565 TRIXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA 624 TR GP+SF+GL+ PH+ R + R + +SAL G LLLV A Sbjct: 224 TRFWALLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLPVSALTGALLLVVA 283 Query: 625 DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLL 655 D R++ P ++P G+L+ IGAP+F++LL Sbjct: 284 DLLARIIHPPLELPVGVLTAIIGAPWFVWLL 314 Score = 54.7 bits (130), Expect = 2e-008 Identities = 61/239 (25%), Positives = 88/239 (36%), Gaps = 11/239 (4%) Query: 59 LPRLAISXXXXXXXXXXXXXXXXXXRNPLAEPTTLGVATGAQLGITVTTLWAIPG--AMA 116 LPRL ++ RNPLA P LGV A L +V L +P M Sbjct: 52 LPRLLLALFVGAALAVAGVLIQGIVRNPLASPDILGVNHAASLA-SVGALLLMPSLPVMV 110 Query: 117 SQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMF 176 A AG + GLI+ + K P+ L L G+ +S ++ L++ + + Sbjct: 111 LPLLAFAGG-MAGLILLKML-AKTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNAL 168 Query: 177 LWSTGTLTQTDWGGVERLWPQXXXXXXXXXXXXXXXXXXXXDDGVXXXXXXXXXXXXXXX 236 LW TG+L DW V+ P D Sbjct: 169 LWLTGSLWGRDWSFVKIAIPLMILFLPLSLSFCRDLDLLALGDARATTLGVSVPHTRFWA 228 Query: 237 XXXXXXXXXXXXNAVGIIGFIGLFAPLLAKMLGA---RRLLPRLMLASLIGALILWLSD 292 A G I FIGL P + + + RRLLP +++L GAL+L ++D Sbjct: 229 LLLAVAMTSTGVAACGPISFIGLVVPHMMRSITGGRHRRLLP---VSALTGALLLVVAD 284 >b0589 ferric enterobactin transport protein (fepG) {Escherichia coli K12-MG1655} Length = 330 Score = 144 bits (363), Expect = 2e-035 Identities = 92/276 (33%), Positives = 151/276 (54%), Gaps = 9/276 (3%) Query: 389 WRWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFG 448 WR PR++ AL G L V+G I Q L NP+ SP+V+G ++GA GV++ + L G Sbjct: 58 WRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLF-GQDLT 116 Query: 449 WLLPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGM---ALSTAFTMLLMMLQASGDPRM 505 + + +G VT L++ + A R G R+++ G+ A+ AF L +L+AS + + Sbjct: 117 AIALSAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVAFNTWL-LLKASLETAL 175 Query: 506 AQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGVALTPT 565 L W +GS T A+ + +++++L L R + +L +G DTA A+GV++ + Sbjct: 176 TAGL-WNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERS 234 Query: 566 RIXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIA-RMMGFRRTMPHIVISALVGGLLLVFA 624 R+ GP+SF+ L+APHIA R+ G R + +AL G LLL+ A Sbjct: 235 RLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW--GLTQAALCGALLLLAA 292 Query: 625 DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660 D C + + P+Q+P G+++ +G Y I LL ++SR Sbjct: 293 DLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESR 328 Score = 49.3 bits (116), Expect = 8e-007 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Query: 84 RNPLAEPTTLGVATGAQLGITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSP 143 RNPL P +G TGA G+ V + A +A+ G V L+V+ +AW + Sbjct: 85 RNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALSAMVGGIVTSLLVWLLAWRNGIDT 144 Query: 144 VTLILAGLVVSLYCGAINQ-LLVIFHHDQLQSMFLWSTGTLTQTDW 188 LI+ G+ V A N LL+ + + LW+ G+L W Sbjct: 145 FRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTW 190 >b0590 ferric enterobactin (enterochelin) transport (fepD) {Escherichia coli K12-MG1655} Length = 334 Score = 133 bits (334), Expect = 4e-032 Identities = 90/274 (32%), Positives = 142/274 (51%), Gaps = 5/274 (1%) Query: 390 RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGW 449 R PR +A L AG L +AG ++Q LT NP+A P +LG+++GA+F +VL L ++ Sbjct: 60 RLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGASFAIVLGAALFGYSSAQE 119 Query: 450 LLPAGSIGAAVTLLIIMIAAGRGG--FSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQ 507 L GA V LI+ +GG SP R+ LAG+AL+ L + Q Sbjct: 120 QLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQ 179 Query: 508 VLTWISGSTYNATDAQVWRTGIVMVILLAITP-LCRRWLTILPLGGDTARAVGVALTPTR 566 + W +GS + + + ++ V++ T L R L L LG DTA A+G + T+ Sbjct: 180 LRFWQAGS-LDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRVARTQ 238 Query: 567 IXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFADW 626 + +GP++F+GLM PH+AR + + ++ L LL+FAD Sbjct: 239 LIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADI 298 Query: 627 CGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660 GR V+ P ++ ++S FIGAP I+L+R+++R Sbjct: 299 IGR-VIVPGELRVSVVSAFIGAPVLIFLVRRKTR 331 Score = 54.7 bits (130), Expect = 2e-008 Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 84 RNPLAEPTTLGVATGAQLGITV-TTLWAIPGAMASQFAALAGACVVGLIVF--GVAWGKR 140 RNPLA+P LGV GA I + L+ A A AGA V LIV G G + Sbjct: 86 RNPLADPGLLGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQ 145 Query: 141 LSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTL 183 LSPV L LAG+ ++ + + + + D + W G+L Sbjct: 146 LSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSL 188 >b1711 vitamin B12 transport permease protein (btuC) {Escherichia coli K12-MG1655} Length = 326 Score = 127 bits (320), Expect = 2e-030 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 6/280 (2%) Query: 385 DLMPW--RWPRIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLV 442 +L W R PR +A L G LA++G ++Q L NP+A P +LG+S+GA G++ + L Sbjct: 49 ELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLIAAVLLG 108 Query: 443 PGNAFGWLLPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLL-MMLQASG 501 G W L +I A+ + +I++ R S R+LLAG+AL + L+ + S Sbjct: 109 QGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALMTWAIYFST 168 Query: 502 DPRMAQVLTWISGSTYNATDAQVWRTGIVMVILLAITPLCR-RWLTILPLGGDTARAVGV 560 + Q++ W+ G Q W ++ +LL I C+ R + +L LG +AR +G+ Sbjct: 169 SVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWI--CCQSRPMNMLALGEISARQLGL 226 Query: 561 ALTPTRIXXXXXXXXXXXXXXMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLL 620 L R G + F+GL+ PHI R+ G + AL G Sbjct: 227 PLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASA 286 Query: 621 LVFADWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR 660 L+ AD R+ L ++P G+++ +GAP FI+LL K R Sbjct: 287 LLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKAGR 326 Score = 53.5 bits (127), Expect = 4e-008 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 85 NPLAEPTTLGVATGAQLGITVTTLWA---IPGAMASQFAALAGACVVGLIVFGVAWGKRL 141 NPLAEP LGV+ GA +G+ L +P A A+AGA ++ LI+ A + L Sbjct: 83 NPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPN-WALGLCAIAGALIITLILLRFA-RRHL 140 Query: 142 SPVTLILAGLVVSLYCGAINQLLVIFHHD-QLQSMFLWSTGTLTQTDW 188 S L+LAG+ + + C A+ + F L+ + W G DW Sbjct: 141 STSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDW 188 Query= Z0165 glutamate-1-semialdehyde aminotransferase (aminomutase) (hemL) {Escherichia coli O157:H7 EDL933} (426 letters) Score E Sequences producing significant alignments: (bits) Value b0154 glutamate-1-semialdehyde aminotransferase (aminomutase) (h... 814 0.0 b2662 4-aminobutyrate aminotransferase activity (gabT) [2.6.1.19... 150 2e-037 b1302 4-aminobutyrate aminotransferase (goaG) [2.6.1.19] {Escher... 142 4e-035 b1748 acetylornithine delta-aminotransferase (cstC) {Escherichia... 129 3e-031 b3359 acetylornithine delta-aminotransferase (argD) [2.6.1.11] {... 129 5e-031 b3073 probable ornithine aminotransferase (ygjG) [2.6.1.13] {Esc... 125 4e-030 b0774 7,8-diaminopelargonic acid synthetase (bioA) [2.6.1.62] {E... 96 3e-021 >b0154 glutamate-1-semialdehyde aminotransferase (aminomutase) (hemL) [5.4.3.8] {Escherichia coli K12-MG1655} Length = 426 Score = 814 bits (2103), Expect = 0.0 Identities = 405/426 (95%), Positives = 407/426 (95%) Query: 1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG 60 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG Sbjct: 1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG 60 Query: 61 PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM 120 PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM Sbjct: 61 PMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATM 120 Query: 121 SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCT 180 SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAK+TLTCT Sbjct: 121 SAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPADFAKYTLTCT 180 Query: 181 YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPDFLPGLRALCDEFGALLIIDEVM 240 YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLP+FLPGLRALCDEFGALLIIDEVM Sbjct: 181 YNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPEFLPGLRALCDEFGALLIIDEVM 240 Query: 241 TGFRVALAGAQDYYGVEPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG 300 TGFRVALAGAQDYYGV PDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG Sbjct: 241 TGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSG 300 Query: 301 NPIAMAAGFACLNEVAQPGVHETLDXXXXXXXXXXXXXXXXXXIPLVVNHVGGMFGIFFT 360 NPIAMAAGFACLNEVAQPGVHETLD IPLVVNHVGGMFGIFFT Sbjct: 301 NPIAMAAGFACLNEVAQPGVHETLDELTTRLAEGLLEAAEEAGIPLVVNHVGGMFGIFFT 360 Query: 361 DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR 420 DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR Sbjct: 361 DAESVTCYQDVMACDVERFKRFFHMMLDEGVYLAPSAFEAGFMSVAHSMEDINNTIDAAR 420 Query: 421 RVFAKL 426 RVFAKL Sbjct: 421 RVFAKL 426 >b2662 4-aminobutyrate aminotransferase activity (gabT) [2.6.1.19] {Escherichia coli K12-MG1655} Length = 426 Score = 150 bits (378), Expect = 2e-037 Identities = 109/336 (32%), Positives = 160/336 (47%), Gaps = 38/336 (11%) Query: 1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWG 60 M+ ++ L + IP GV P+F ++A+ ++DV+G+ Y+D+ G Sbjct: 1 MNSNKELMQRRSQAIPRGVGQI---------HPIFADRAENCRVWDVEGREYLDFAGGIA 51 Query: 61 PMVLGHNHPAIRNAVIEAAERGLSFGA----PTEMEVKMAQLVTELVPTMDMVR---MVN 113 + GH HP + A +EA + LS E +++ +++ + VP D + +V Sbjct: 52 VLNTGHLHPKVV-AAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-DFAKKTLLVT 109 Query: 114 SGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGV---PA 170 +G+EA +A+++AR T R I F G YHG L G P S G+ P Sbjct: 110 TGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKV-----NPYSAGMGLMPG 164 Query: 171 DFAKHTLTCTYNDL------ASVRAAFEQ--YPQEIACIIVEPVAGNMNCVPPLPDFLPG 222 + C + + AS+ F+ P++IA I++EPV G P F+ Sbjct: 165 HVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQR 224 Query: 223 LRALCDEFGALLIIDEVMTGF-RVALAGAQDYYGVEPDLTCLGKIIGGGMPVGAFGGRRD 281 LRALCDE G +LI DEV +G R A + GV PDLT K I GG P+ GR + Sbjct: 225 LRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPLAGVTGRAE 284 Query: 282 VMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQ 317 VMDA+AP G GT +GNPIA A L Q Sbjct: 285 VMDAVAPGG---LGGTYAGNPIACVAALEVLKVFEQ 317 >b1302 4-aminobutyrate aminotransferase (goaG) [2.6.1.19] {Escherichia coli K12-MG1655} Length = 421 Score = 142 bits (358), Expect = 4e-035 Identities = 102/343 (29%), Positives = 157/343 (45%), Gaps = 17/343 (4%) Query: 35 FIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFG---APTEM 91 F + A+ A L DV+G YID+ + GH HP + AV + ++ P E Sbjct: 25 FAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYES 84 Query: 92 EVKMAQLVTELVPTMDMVRMV--NSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCL 149 V +A+ + L P + +G EA +A+++AR TGR +I F G +HG Sbjct: 85 YVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMT 144 Query: 150 LVKAGSGA-LTLGQPNSPG----VPADFAKHTLTCTYNDLASVRAAFEQ--YPQEIACII 202 + G A +G PG VP H ++ T + L ++ F+ +++A II Sbjct: 145 MALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGIS-TQDSLDAIERLFKSDIEAKQVAAII 203 Query: 203 VEPVAGNMNCVPPLPDFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYGVEPDLT 261 EPV G + + +R LCDE G ++I DEV +GF R A D+Y +PDL Sbjct: 204 FEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLM 263 Query: 262 CLGKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVH 321 + K + GGMP+ G ++MDA AP G GT +GNP+A+AA A LN + + + Sbjct: 264 TMAKSLAGGMPLSGVVGNANIMDAPAPGG---LGGTYAGNPLAVAAAHAVLNIIDKESLC 320 Query: 322 ETLDXXXXXXXXXXXXXXXXXXIPLVVNHVGGMFGIFFTDAES 364 E + V +G M + F D ++ Sbjct: 321 ERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAVEFNDPQT 363 >b1748 acetylornithine delta-aminotransferase (cstC) {Escherichia coli K12-MG1655} Length = 406 Score = 129 bits (325), Expect = 3e-031 Identities = 98/295 (33%), Positives = 135/295 (45%), Gaps = 23/295 (7%) Query: 33 PLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAER--GLSFGAPTE 90 P + +G+ L+D GK YID+ G LGH HP +R A+ E A + G E Sbjct: 22 PFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNE 81 Query: 91 MEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGF------TGRDKIIKFEGCYHG 144 +++A+ + + D V NSG EA +A++LAR F + + I+ F+ +HG Sbjct: 82 PVLRLAKKLIDAT-FADRVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHG 140 Query: 145 HADCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVE 204 L + G Q +P +PAD +H YND+ S A + +IVE Sbjct: 141 RT--LFTVSAGGQPAYSQDFAP-LPADI-RHA---AYNDINSASALIDD---STCAVIVE 190 Query: 205 PVAGNMNCVPPLPDFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYGVEPDLTCL 263 P+ G VP FL GLR LC+ ALLI DEV TG R A +YGV PDL Sbjct: 191 PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTT 250 Query: 264 GKIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQP 318 K +GGG PVGA + + T GNP+A A L + P Sbjct: 251 AKALGGGFPVGALLATEECARVMTVG---THGTTYGGNPLASAVAGKVLELINTP 302 >b3359 acetylornithine delta-aminotransferase (argD) [2.6.1.11] {Escherichia coli K12-MG1655} Length = 406 Score = 129 bits (323), Expect = 5e-031 Identities = 97/298 (32%), Positives = 139/298 (46%), Gaps = 31/298 (10%) Query: 38 KADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAER--GLSFGAPTEMEVKM 95 K G+ ++D GK Y+D+ G LGH HPA+ NA+ E +S E +++ Sbjct: 30 KGQGSRIWDQQGKEYVDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNEPALRL 89 Query: 96 AQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTG------RDKIIKFEGCYHGHADCL 149 + + E + V +NSGTEA +A +LAR + + KII F +HG + Sbjct: 90 GRKLIEAT-FAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRS-LF 147 Query: 150 LVKAGSGALTLGQPN-SPGV---PADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEP 205 V G GQP S G PAD + +NDL +V+A + + ++VEP Sbjct: 148 TVSVG------GQPKYSDGFGPKPADI----IHVPFNDLHAVKAVMDDHT---CAVVVEP 194 Query: 206 VAGNMNCVPPLPDFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYGVEPDLTCLG 264 + G P+FL GLR LCD+ ALL+ DEV G R A +YGV PD+ Sbjct: 195 IQGEGGVTAATPEFLQGLRELCDQHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSA 254 Query: 265 KIIGGGMPVGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHE 322 K +GGG P+ A ++ A P T GNP+A A A + + P V E Sbjct: 255 KALGGGFPISAMLTTAEIASAFHPGS---HGSTYGGNPLACAVAGAAFDIINTPEVLE 309 >b3073 probable ornithine aminotransferase (ygjG) [2.6.1.13] {Escherichia coli K12-MG1655} Length = 496 Score = 125 bits (315), Expect = 4e-030 Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 19/281 (6%) Query: 44 LYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVI-EAAERGL-SFGAPTEMEVKMAQLVTE 101 L D G+ +ID +G +G +GH +P + +AV + A++ L S + +A+ + Sbjct: 113 LVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAA 172 Query: 102 LVP-TMDMVRMVNSGTEATMSAIRLARGFT---GRDKIIKFEGCYHGHADCLLVKAGSGA 157 L P + NSGTE+ +A++LA+ + G+ I G +HG + L + + Sbjct: 173 LTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKS--LGALSATAK 230 Query: 158 LTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQ---EIACIIVEPVAGNMNCVP 214 T +P P +P +H + ++ ++R A + + ++A +I+EP+ G + Sbjct: 231 STFRKPFMPLLPG--FRHV---PFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVIL 285 Query: 215 PLPDFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDYYGVEPDLTCLGKIIGGG-MP 272 P P +L +R LCDEFGAL+I+DEV TG R A ++ V+PD+ CL K +GGG MP Sbjct: 286 PPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMP 345 Query: 273 VGAFGGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLN 313 +GA +V L P T GNP+A AA A +N Sbjct: 346 IGATIATEEVFSVLF-DNPFLHTTTFGGNPLACAAALATIN 385 >b0774 7,8-diaminopelargonic acid synthetase (bioA) [2.6.1.62] {Escherichia coli K12-MG1655} Length = 429 Score = 96.3 bits (238), Expect = 3e-021 Identities = 82/302 (27%), Positives = 135/302 (44%), Gaps = 31/302 (10%) Query: 36 IEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAV---IEAAERGLSFGAPTEME 92 + A+G L DG+ +D + SW + G+NHP + A+ I+A + G Sbjct: 29 VVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA 88 Query: 93 VKMAQLVTELVPT-MDMVRMVNSGTEATMSAIRLARGF-----TGRDKIIKFEGCYHGHA 146 +++ + + + P ++ V + +SG+ A A+++A + R + + F YHG Sbjct: 89 IELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDT 148 Query: 147 ---------DCLLVKAGSGALTLGQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQE 197 D + G L P + PA ++ D+ + E Sbjct: 149 FGAMSVCDPDNSMHSLWKGYL----PENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHE 204 Query: 198 IACIIVEPV---AGNMNCVPPLPDFLPGLRALCDEFGALLIIDEVMTGF-RVALAGAQDY 253 IA +I+EP+ AG M P ++L +R +CD G LLI DE+ TGF R A ++ Sbjct: 205 IAAVIIEPIVQGAGGMRMYHP--EWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262 Query: 254 YGVEPDLTCLGK-IIGGGMPVGAFGGRRDVMDALA--PTGPVYQAGTLSGNPIAMAAGFA 310 + PD+ CLGK + GG M + A R+V + ++ G T GNP+A AA A Sbjct: 263 AEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANA 322 Query: 311 CL 312 L Sbjct: 323 SL 324 Query= Z0166 putative channel transporter (yadQ) {Escherichia coli O157:H7 EDL933} (473 letters) Score E Sequences producing significant alignments: (bits) Value b0155 putative channel transporter (yadQ) {Escherichia coli K12-... 705 0.0 b1592 putative chloride channel {Escherichia coli K12-MG1655} 69 5e-013 >b0155 putative channel transporter (yadQ) {Escherichia coli K12-MG1655} Length = 473 Score = 705 bits (1819), Expect = 0.0 Identities = 375/473 (79%), Positives = 376/473 (79%) Query: 1 MKTDTPSLETPQAAXXXXXXXXXXXXXXDKTPLAILFMXXXXXXXXXXXXXXFDKGVAWL 60 MKTDTPSLETPQAA DKTPLAILFM FDKGVAWL Sbjct: 1 MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWL 60 Query: 61 QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR 120 QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR Sbjct: 61 QNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQR 120 Query: 121 PVRWWRVLPVKFFXXXXXXXXXXXXXXXXPTVQIGGNIGRMVLDVFRLKGDEARHTXXXX 180 PVRWWRVLPVKFF PTVQIGGNIGRMVLD+FRLKGDEARHT Sbjct: 121 PVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLAT 180 Query: 181 XXXXXXXXXXXXXXXXXXFIIEEMRPQFRYTLISIKAVFIXVIMSTIMYRIFNHEVALID 240 FIIEEMRPQFRYTLISIKAVFI VIMSTIMYRIFNHEVALID Sbjct: 181 GAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALID 240 Query: 241 VGKLSDAPLNTLWXXXXXXXXXXXXXXXXNKWVLGMQDLLHRVHGGNITKWVXXXXXXXX 300 VGKLSDAPLNTLW NKWVLGMQDLLHRVHGGNITKWV Sbjct: 241 VGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGG 300 Query: 301 XXXXXXFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM 360 FVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM Sbjct: 301 LCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPM 360 Query: 361 LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ 420 LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ Sbjct: 361 LALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ 420 Query: 421 LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT 473 LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT Sbjct: 421 LILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQLARSKAASASENT 473 >b1592 putative chloride channel {Escherichia coli K12-MG1655} Length = 438 Score = 69.3 bits (168), Expect = 5e-013 Identities = 37/128 (28%), Positives = 65/128 (50%) Query: 310 PATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369 PA G G++ + + ++ IF+ ++ L SGAPGG+F P L +G +G Sbjct: 295 PAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGM 354 Query: 370 AFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITG 429 +G FP + GM LLAA+ AP+ +++ EMT YQL+ ++I Sbjct: 355 LYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIAC 414 Query: 430 LGATLLAQ 437 + A+++++ Sbjct: 415 VIASVISR 422 Query= Z0167 orf, hypothetical protein (yadR) {Escherichia coli O157:H7 EDL933} (114 letters) Score E Sequences producing significant alignments: (bits) Value b0156 orf, hypothetical protein (yadR) {Escherichia coli K12-MG1... 233 2e-063 b2528 putative regulator (yfhF) {Escherichia coli K12-MG1655} 75 1e-015 b1684 orf, hypothetical protein (ydiC) {Escherichia coli K12-MG1... 55 1e-009 >b0156 orf, hypothetical protein (yadR) {Escherichia coli K12-MG1655} Length = 114 Score = 233 bits (594), Expect = 2e-063 Identities = 114/114 (100%), Positives = 114/114 (100%) Query: 1 MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDM 60 MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDM Sbjct: 1 MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDM 60 Query: 61 TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI 114 TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI Sbjct: 61 TIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI 114 >b2528 putative regulator (yfhF) {Escherichia coli K12-MG1655} Length = 107 Score = 75.1 bits (183), Expect = 1e-015 Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 5/110 (4%) Query: 7 LPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQG 66 + + +D+AA +V + +A+ LR+ + GCSG Y F D+ D+ E +G Sbjct: 1 MSITLSDSAAARVNTFLANRGK-GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKG 59 Query: 67 VGLVVDPMSLQYLVGGSVDYT-EGL-EGSRFIVTNPNAKSTCGCGSSFSI 114 V +VVD SLQ+L G +D+ EGL EG +F TNPN K CGCG SF + Sbjct: 60 VKVVVDGKSLQFLDGTQLDFVKEGLNEGFKF--TNPNVKDECGCGESFHV 107 >b1684 orf, hypothetical protein (ydiC) {Escherichia coli K12-MG1655} Length = 122 Score = 55.1 bits (131), Expect = 1e-009 Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 1/106 (0%) Query: 9 LEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVG 68 L T AAA ++ L+A + + +R+ + GC+GF Y + ++ D+ E G Sbjct: 18 LTLTPAAAIHIRELVAKQPGM-VGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAK 76 Query: 69 LVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNAKSTCGCGSSFSI 114 L V ++ ++ G VD+ F NP A++ CGCG SF + Sbjct: 77 LFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 122 Query= Z0168 orf, hypothetical protein (yadS) {Escherichia coli O157:H7 EDL933} (207 letters) Score E Sequences producing significant alignments: (bits) Value b0157 orf, hypothetical protein (yadS) {Escherichia coli K12-MG1... 347 3e-097 b3646 orf, hypothetical protein (yicG) {Escherichia coli K12-MG1... 95 4e-021 >b0157 orf, hypothetical protein (yadS) {Escherichia coli K12-MG1655} Length = 207 Score = 347 bits (891), Expect = 3e-097 Identities = 180/207 (86%), Positives = 180/207 (86%) Query: 1 MLVYWLDIVGTAVFAISGVLLAGKLRMDPFXXXXXXXXXXXXXXXIRDMALDHGPVFWVK 60 MLVYWLDIVGTAVFAISGVLLAGKLRMDPF IRDMALDHGPVFWVK Sbjct: 1 MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGGTIRDMALDHGPVFWVK 60 Query: 61 DPTDLVVAMVTSMLTIVLVRQPRHLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAV 120 DPTDLVVAMVTSMLTIVLVRQPR LPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAV Sbjct: 61 DPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAV 120 Query: 121 CMXXXXXXXXXXXRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGM 180 CM RDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGM Sbjct: 121 CMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGM 180 Query: 181 VVTLLIRLAAIRWHLKLPTFALDENGR 207 VVTLLIRLAAIRWHLKLPTFALDENGR Sbjct: 181 VVTLLIRLAAIRWHLKLPTFALDENGR 207 >b3646 orf, hypothetical protein (yicG) {Escherichia coli K12-MG1655} Length = 223 Score = 94.7 bits (234), Expect = 4e-021 Identities = 62/206 (30%), Positives = 96/206 (46%), Gaps = 2/206 (0%) Query: 1 MLVYWLDIVGTAVFAISGVLLAGKLRMDPFXXXXXXXXXXXXXXXIRDMALDHGPVFWVK 60 ML++ L +VG A++G L AG+ RMD F +RD+ L H P+ WVK Sbjct: 19 MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGGSVRDILLGHYPLGWVK 78 Query: 61 DPTDLVVAMVTSMLTIVLVRQPRHLPKWMLPVLDAVGLAVFVGIGVNKAFNAEAGPLIAV 120 P +++ ++LT ++ +L K L VLDA+GL VF IG A + GP+IAV Sbjct: 79 HPEYVIIVATAAVLTTIVAPVMPYLRKVFL-VLDALGLVVFSIIGAQVALDMGHGPIIAV 137 Query: 121 CMXXXXXXXXXXXRDVLAREIPMILRTEIYATACIIGGIVHATAYYTFSVPLETASMMGM 180 RD+ + IP++ + E+YA +++ + S + + + Sbjct: 138 VAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLYIALQHYVS-NHDVVIISTL 196 Query: 181 VVTLLIRLAAIRWHLKLPTFALDENG 206 V RL A+R L LP F G Sbjct: 197 VFGFFARLLALRLKLGLPVFYYSHEG 222 Query= Z0169 orf, hypothetical protein (yadT) {Escherichia coli O157:H7 EDL933} (266 letters) Score E Sequences producing significant alignments: (bits) Value b0158 orf, hypothetical protein (yadT) {Escherichia coli K12-MG1... 529 e-152 >b0158 orf, hypothetical protein (yadT) {Escherichia coli K12-MG1655} Length = 266 Score = 529 bits (1362), Expect = e-152 Identities = 265/266 (99%), Positives = 266/266 (100%) Query: 1 MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKI 60 MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKI Sbjct: 1 MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITPVGVSSYSDYPPQAQKI 60 Query: 61 EQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATNIEQIANALR 120 EQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDAT+IEQIANALR Sbjct: 61 EQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALR 120 Query: 121 QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVL 180 QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVL Sbjct: 121 QLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFLQFGINPPFTSGKESIQNQVL 180 Query: 181 EVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLT 240 EVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLT Sbjct: 181 EVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGPDQIPKIKQYWGEQLKIPVIPLT 240 Query: 241 SDWFERASPRIILAAQQLCNALSQVD 266 SDWFERASPRIILAAQQLCNALSQVD Sbjct: 241 SDWFERASPRIILAAQQLCNALSQVD 266 Query= Z0170 orf, hypothetical protein (pfs) {Escherichia coli O157:H7 EDL933} (232 letters) Score E Sequences producing significant alignments: (bits) Value b0159 orf, hypothetical protein (pfs) {Escherichia coli K12-MG1655} 420 e-119 >b0159 orf, hypothetical protein (pfs) {Escherichia coli K12-MG1655} Length = 232 Score = 420 bits (1080), Expect = e-119 Identities = 217/232 (93%), Positives = 217/232 (93%) Query: 1 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT Sbjct: 1 MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGAT 60 Query: 61 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK 120 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK Sbjct: 61 LLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFK 120 Query: 121 ADDKLXXXXXXXXXXXXXXXVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH 180 ADDKL VRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH Sbjct: 121 ADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAH 180 Query: 181 VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG 232 VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG Sbjct: 181 VCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG 232 Query= Z0171 deoxyguanosine triphosphate triphosphohydrolase (dgt) {Escherichia coli O157:H7 EDL933} (505 letters) Score E Sequences producing significant alignments: (bits) Value b0160 deoxyguanosine triphosphate triphosphohydrolase (dgt) [3.1... 1021 0.0 >b0160 deoxyguanosine triphosphate triphosphohydrolase (dgt) [3.1.5.1] {Escherichia coli K12-MG1655} Length = 505 Score = 1021 bits (2640), Expect = 0.0 Identities = 502/505 (99%), Positives = 503/505 (99%) Query: 1 MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN 60 MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN Sbjct: 1 MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPAIRRLQQKTQVFPLERN 60 Query: 61 AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG 120 AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG Sbjct: 61 AAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDELTGPFESIVEMSCLMHDIG 120 Query: 121 NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAVLRLRDGEEPLNELRRKIRQDL 180 NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVA LRLRDGEEPLNELRRKIRQDL Sbjct: 121 NPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDL 180 Query: 181 CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE 240 CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE Sbjct: 181 CHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWWRGETPETHHYLMKKPGYYLSEE 240 Query: 241 AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG 300 AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG Sbjct: 241 AYIARLRKELNLALYSRFPLTWIMEAADDISYCVADLEDAVEKRIFTVEQLYHHLHEAWG 300 Query: 301 QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF 360 QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF Sbjct: 301 QHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFMYLRVNTLNKLVPYAAQRFIDNLPAIF 360 Query: 361 AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVEQLELQGYRVISGLLEIYRPLLSL 420 AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVE+LELQGYRVISGLLEIYRPLLSL Sbjct: 361 AGTFNHALLEDASECSDLLKLYKNVAVKHVFSHPDVERLELQGYRVISGLLEIYRPLLSL 420 Query: 421 SLSDFTELVEKERVKRSPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL 480 SLSDFTELVEKERVKR PIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL Sbjct: 421 SLSDFTELVEKERVKRFPIESRLFHKLSTRHRLAYVEAVSKLPSDSPEFPLWEYYYRCRL 480 Query: 481 LQDYISGMTDLYAWDEYRRLMAVEQ 505 LQDYISGMTDLYAWDEYRRLMAVEQ Sbjct: 481 LQDYISGMTDLYAWDEYRRLMAVEQ 505 Query= Z0173 periplasmic serine protease Do heat shock protein (htrA) {Escherichia coli O157:H7 EDL933} (474 letters) Score E Sequences producing significant alignments: (bits) Value b0161 periplasmic serine protease Do; heat shock protein HtrA (h... 793 0.0 b3234 serine endoprotease (degQ) [3.4.21.-] {Escherichia coli K1... 491 e-140 b3235 protease (degS) [3.4.21.-] {Escherichia coli K12-MG1655} 207 9e-055 >b0161 periplasmic serine protease Do; heat shock protein HtrA (htrA) [3.4.21.-] {Escherichia coli K12-MG1655} Length = 474 Score = 793 bits (2047), Expect = 0.0 Identities = 414/439 (94%), Positives = 414/439 (94%) Query: 36 QQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFC 95 QQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFC Sbjct: 36 QQMPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFC 95 Query: 96 XXXXXXXXXXXXXKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVG 155 KFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVG Sbjct: 96 QGGQGGNGGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVG 155 Query: 156 KDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG 215 KDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG Sbjct: 156 KDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSG 215 Query: 216 LNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN 275 LNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN Sbjct: 216 LNAENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN 275 Query: 276 LTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDV 335 LTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDV Sbjct: 276 LTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDV 335 Query: 336 ITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELXXXXXXXXXXXXIFN 395 ITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL IFN Sbjct: 336 ITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSSIFN 395 Query: 396 GIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKP 455 GIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKP Sbjct: 396 GIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKP 455 Query: 456 SVLALNIQRGDSTIYLLMQ 474 SVLALNIQRGDSTIYLLMQ Sbjct: 456 SVLALNIQRGDSTIYLLMQ 474 >b3234 serine endoprotease (degQ) [3.4.21.-] {Escherichia coli K12-MG1655} Length = 455 Score = 491 bits (1265), Expect = e-140 Identities = 254/440 (57%), Positives = 328/440 (74%), Gaps = 26/440 (5%) Query: 38 MPSLAPMLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCXX 97 +PSLAPMLEKV+P+VVS+ VEG T ++P F++FFGDD P Q PF+ Sbjct: 39 LPSLAPMLEKVLPAVVSVRVEG-TASQGQKIPEEFKKFFGDDLPD-QPAQPFEG------ 90 Query: 98 XXXXXXXXXXXKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKD 157 LGSGVII+A KGYV+TNNHV++ A I +QL+DGR+FDAK++G D Sbjct: 91 ---------------LGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSD 135 Query: 158 PRSDIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLN 217 +SDIAL+QIQNP LT I +ADSD LRVGD+ VA+GNPFGLG+T TSGIVSALGRSGLN Sbjct: 136 DQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLN 195 Query: 218 AENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLT 277 E ENFIQTDA+INRGNSGGAL+NLNGELIGINTAILAP GG++GIGFAIPSNM + L Sbjct: 196 LEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLA 255 Query: 278 SQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVIT 337 Q++++G++KRG LGI GTE+++++AKA +D QRGAFVS+VLP S +AKAG+KAGD+IT Sbjct: 256 QQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIIT 315 Query: 338 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELXXXXXXXXXXXXIFNGI 397 SLNGKP++SFA LR+++ T G+K+ LGLLR+GK + V + L I + Sbjct: 316 SLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPAL 375 Query: 398 EGAEMSN---KGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSK 454 EGA +S+ K +G+ ++ V G+PAAQ GL+K DVIIG N+ V +IAE+RKVL +K Sbjct: 376 EGATLSDGQLKDGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAK 435 Query: 455 PSVLALNIQRGDSTIYLLMQ 474 P+++AL I RG+ +IYLLM+ Sbjct: 436 PAIIALQIVRGNESIYLLMR 455 >b3235 protease (degS) [3.4.21.-] {Escherichia coli K12-MG1655} Length = 355 Score = 207 bits (528), Expect = 9e-055 Identities = 117/273 (42%), Positives = 170/273 (62%), Gaps = 8/273 (2%) Query: 113 LGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN 172 LGSGVI+D +GY++TN HV+++A I V L DGR F+A +VG D +D+A+++I Sbjct: 79 LGSGVIMD-QRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGG 137 Query: 173 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAENYENFIQTDAAIN 232 L I + +GD +AIGNP+ LG+T+T GI+SA GR GLN +NF+QTDA+IN Sbjct: 138 LPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASIN 197 Query: 233 RGNSGGALVNLNGELIGINTAILAPDGGN-----IGIGFAIPSNMVKNLTSQMVEYGQVK 287 GNSGGALVN GEL+GINT L+ D N GIGFAIP + + +++ G+V Sbjct: 198 HGNSGGALVNSLGELMGINT--LSFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVI 255 Query: 288 RGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF 347 RG +GI G E+ A+ +D +G V++V P+ AA AGI+ D+I S++ KP S Sbjct: 256 RGYIGIGGREIAPLHAQGGGIDQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA 315 Query: 348 AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 380 QV + GS + + ++RD KQ+ + + + Sbjct: 316 LETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTI 348 Query= Z0174 orf, hypothetical protein (yaeG) {Escherichia coli O157:H7 EDL933} (391 letters) Score E Sequences producing significant alignments: (bits) Value b0162 orf, hypothetical protein (yaeG) {Escherichia coli K12-MG1... 767 0.0 >b0162 orf, hypothetical protein (yaeG) {Escherichia coli K12-MG1655} Length = 391 Score = 767 bits (1980), Expect = 0.0 Identities = 389/391 (99%), Positives = 389/391 (99%) Query: 1 MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLV 60 MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLV Sbjct: 1 MHNGGLMAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLV 60 Query: 61 LSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEM 120 LSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEM Sbjct: 61 LSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEM 120 Query: 121 MLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSG 180 MLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSG Sbjct: 121 MLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIVEVDSG 180 Query: 181 QLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDVEDHRKRVEQL 240 QLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWD EDHRKRVEQL Sbjct: 181 QLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQL 240 Query: 241 ITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL 300 ITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL Sbjct: 241 ITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVL 300 Query: 301 LDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYR 360 LDSLRGDWQANELARPLARLK MDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYR Sbjct: 301 LDSLRGDWQANELARPLARLKTMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYR 360 Query: 361 LNRISELTGLDLGNFDDRLLLYVALQLDEER 391 LNRISELTGLDLGNFDDRLLLYVALQLDEER Sbjct: 361 LNRISELTGLDLGNFDDRLLLYVALQLDEER 391 Query= Z0175 putative structural protein (yaeH) {Escherichia coli O157:H7 EDL933} (128 letters) Score E Sequences producing significant alignments: (bits) Value b0163 putative structural protein (yaeH) {Escherichia coli K12-M... 254 1e-069 >b0163 putative structural protein (yaeH) {Escherichia coli K12-MG1655} Length = 128 Score = 254 bits (650), Expect = 1e-069 Identities = 128/128 (100%), Positives = 128/128 (100%) Query: 1 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD 60 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD Sbjct: 1 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVAD 60 Query: 61 GVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA 120 GVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA Sbjct: 61 GVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILDDLRHLESVVTNKISEIEA 120 Query: 121 DLEKLTRK 128 DLEKLTRK Sbjct: 121 DLEKLTRK 128 Query= Z0176 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) {Escherichia coli O157:H7 EDL933} (274 letters) Score E Sequences producing significant alignments: (bits) Value b0166 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfe... 507 e-145 >b0166 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (dapD) [2.3.1.117] {Escherichia coli K12-MG1655} Length = 274 Score = 507 bits (1306), Expect = e-145 Identities = 257/274 (93%), Positives = 258/274 (94%) Query: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK 60 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK Sbjct: 1 MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALRVAEKIDGQWVTHQWLK 60 Query: 61 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN 120 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN Sbjct: 61 KAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEGFRVVPPAAVRQGAFIARN 120 Query: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED Sbjct: 121 TVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED 180 Query: 181 NCFIGARXXXXXXXXXXXXXXXXMGVYIGQSTRIYDRETGDIHYGRVPAGSVVVSGNLPS 240 NCFIGAR MGVYIGQSTRIYDRETG+IHYGRVPAGSVVVSGNLPS Sbjct: 181 NCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPS 240 Query: 241 KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID 274 KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID Sbjct: 241 KDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID 274 Query= Z0177 protein PII uridylyltransferase acts on regulator of (glnD) {Escherichia coli O157:H7 EDL933} (890 letters) Score E Sequences producing significant alignments: (bits) Value b0167 protein PII; uridylyltransferase acts on regulator of glnA... 1714 0.0 >b0167 protein PII; uridylyltransferase acts on regulator of glnA (glnD) [2.7.7.59] {Escherichia coli K12-MG1655} Length = 890 Score = 1714 bits (4438), Expect = 0.0 Identities = 856/890 (96%), Positives = 860/890 (96%) Query: 1 MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL 60 MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL Sbjct: 1 MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQRWLGDAFDNGISAEQL 60 Query: 61 IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDIDLLILSRKKLPDDQ 120 IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSD+DLLILSRKKLPDDQ Sbjct: 61 IEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHPLSDVDLLILSRKKLPDDQ 120 Query: 121 AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK 180 AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK Sbjct: 121 AQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVATNLIESRLLIGDVALFLELQK 180 Query: 181 HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF 240 HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF Sbjct: 181 HIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPDIKSSPGGLRDIHTLQWVARRHF 240 Query: 241 GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN 300 GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN Sbjct: 241 GATSLDEMVGFGFLTSAERAELNECLHILWRIRFALHLVVSRYDNRLLFDRQLSVAQRLN 300 Query: 301 YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL 360 YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL Sbjct: 301 YSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLFDEAILALPADEKPRPIDDEFQLRGTL 360 Query: 361 IDLRDETLFMRQPEAILRMFYTMVRNSAITGIYSTTXXXXXXXXXXXXXXXCNIPQARKL 420 IDLRDETLFMRQPEAILRMFYTMV NSAITGIYSTT CNIP+ARKL Sbjct: 361 IDLRDETLFMRQPEAILRMFYTMVHNSAITGIYSTTLRQLRHARRHLQQPLCNIPEARKL 420 Query: 421 FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE 480 FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE Sbjct: 421 FLSILRHPGAVRRGLLPMHRHSVLGAYMPQWSHIVGQMQFDLFHAYTVDEHTIRVMLKLE 480 Query: 481 SFASEETRQRHPLCVNVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG 540 SFASEETRQRHPLCV+VWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG Sbjct: 481 SFASEETRQRHPLCVDVWPRLPSTELIFIAALFHDIAKGRGGDHSILGAQDVVHFAELHG 540 Query: 541 LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA 600 LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA Sbjct: 541 LNSRETQLVAWLVRQHLLMSVTAQRRDIQDPEVIKQFAEEVQTENRLRYLVCLTVADICA 600 Query: 601 TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEVL 660 TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEE L Sbjct: 601 TNETLWNSWKQSLLRELYFATEKQLRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEAL 660 Query: 661 HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL 720 HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL Sbjct: 661 HQIWSRCRANYFVRHSPNQLAWHARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYL 720 Query: 721 FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTX 780 FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDG+PLSADRHEVIRFGLEQVLT Sbjct: 721 FAAVCAELDRRNLSVHDAQIFTTRDGMAMDTFIVLEPDGNPLSADRHEVIRFGLEQVLTQ 780 Query: 781 XXXXXXXXXXXXAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI 840 AKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI Sbjct: 781 SSWQPPQPRRQPAKLRHFTVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGI 840 Query: 841 SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG 890 SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG Sbjct: 841 SLHGARITTIGERVEDLFIIATADRRALNNELQQEVHQRLTEALNPNDKG 890 Query= Z0178 methionine aminopeptidase (map) {Escherichia coli O157:H7 EDL933} (264 letters) Score E Sequences producing significant alignments: (bits) Value b0168 methionine aminopeptidase (map) [3.4.11.18] {Escherichia c... 536 e-154 b2385 putative peptidase {Escherichia coli K12-MG1655} 71 7e-014 b2908 proline aminopeptidase P II (pepP) [3.4.11.9] {Escherichia... 62 5e-011 >b0168 methionine aminopeptidase (map) [3.4.11.18] {Escherichia coli K12-MG1655} Length = 264 Score = 536 bits (1380), Expect = e-154 Identities = 264/264 (100%), Positives = 264/264 (100%) Query: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL Sbjct: 1 MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACL 60 Query: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI Sbjct: 61 GYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTI 120 Query: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE 180 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE Sbjct: 121 MGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEE 180 Query: 181 PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV 240 PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV Sbjct: 181 PQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVV 240 Query: 241 TDNGCEILTLRKDDTIPAIISHDE 264 TDNGCEILTLRKDDTIPAIISHDE Sbjct: 241 TDNGCEILTLRKDDTIPAIISHDE 264 >b2385 putative peptidase {Escherichia coli K12-MG1655} Length = 361 Score = 71.2 bits (173), Expect = 7e-014 Identities = 52/207 (25%), Positives = 99/207 (47%), Gaps = 17/207 (8%) Query: 5 IKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHG 64 IKTPE++EK+R+A +A E I +++ G+S E+ ++ + +Q A A Sbjct: 127 IKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSEREIAAEL-EWFMRQQGAEKA-----S 180 Query: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGE- 123 + V + HG D K++ G+ V +D + G+ D ++ +V + E Sbjct: 181 FDTIVASGWRGALPHGKASD-KIVAAGEFVTLDFGALYQGYCSDMTRTLLVNGEGVSAES 239 Query: 124 ----RLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGF-SVVREYCGHGIGRGFH 178 + +I ++ A+ ++PG+ +++ A ++ + G+ GH IG H Sbjct: 240 HLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRVITEAGYGDYFGHNTGHAIGIEVH 299 Query: 179 EEPQVLHYDSRETNVVLKPGMTFTIEP 205 E+P+ + R+T L+PGM T+EP Sbjct: 300 EDPR---FSPRDT-TTLQPGMLLTVEP 322 >b2908 proline aminopeptidase P II (pepP) [3.4.11.9] {Escherichia coli K12-MG1655} Length = 441 Score = 61.6 bits (148), Expect = 5e-011 Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 36/275 (13%) Query: 6 KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELD-RICNDYIVNEQHAVSACLGYHG 64 K+PE+I +R AG + A +PG+ L+ I +++ +H Y Sbjct: 177 KSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEF---NRHGAR----YPS 229 Query: 65 YPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIV-GKPTIMGE 123 Y V N + H ++ ++ +DGD+V ID G+ GD ++ F V GK T Sbjct: 230 YNTIVGSGENGCILHYTENECEM-RDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 288 Query: 124 RLCRITQESLYLALRMVKPGINLREIGAAIQKFV---------------EAEGFSVVREY 168 + I ESL +LR+ +PG ++ E+ + + + E + R + Sbjct: 289 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 348 Query: 169 CGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDR 228 HG+ + + ++ + +L+PGM T+EP + V + R Sbjct: 349 FMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPDA--------EVPEQYR 400 Query: 229 SLSAQYEHTIVVTDNGCEILT---LRKDDTIPAII 260 + + E IV+T+ G E LT ++K + I A++ Sbjct: 401 GIGIRIEDDIVITETGNENLTASVVKKPEEIEALM 435 Query= Z0180 30S ribosomal subunit protein S2 (rpsB) {Escherichia coli O157:H7 EDL933} (241 letters) Score E Sequences producing significant alignments: (bits) Value b0169 30S ribosomal subunit protein S2 (rpsB) {Escherichia coli ... 479 e-137 >b0169 30S ribosomal subunit protein S2 (rpsB) {Escherichia coli K12-MG1655} Length = 241 Score = 479 bits (1233), Expect = e-137 Identities = 241/241 (100%), Positives = 241/241 (100%) Query: 1 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI 60 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI Sbjct: 1 MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKI 60 Query: 61 ASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQ 120 ASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQ Sbjct: 61 ASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQ 120 Query: 121 SQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLG 180 SQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLG Sbjct: 121 SQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLG 180 Query: 181 IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEA 240 IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEA Sbjct: 181 IPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRSQDLASQAEESFVEA 240 Query: 241 E 241 E Sbjct: 241 E 241 Query= Z0181 protein chain elongation factor EF-Ts (tsf) {Escherichia coli O157:H7 EDL933} (283 letters) Score E Sequences producing significant alignments: (bits) Value b0170 protein chain elongation factor EF-Ts (tsf) {Escherichia c... 501 e-143 >b0170 protein chain elongation factor EF-Ts (tsf) {Escherichia coli K12-MG1655} Length = 283 Score = 501 bits (1290), Expect = e-143 Identities = 265/283 (93%), Positives = 265/283 (93%) Query: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRXXXXXXXXXXXXXXXXXX 60 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMR Sbjct: 1 MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADG 60 Query: 61 VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV 120 VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV Sbjct: 61 VIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKAQFEEERV 120 Query: 121 ALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEF 180 ALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEF Sbjct: 121 ALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEF 180 Query: 181 IKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK 240 IKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK Sbjct: 181 IKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSK 240 Query: 241 TVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 283 TVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS Sbjct: 241 TVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEVAAMSKQS 283 Query= Z0182 uridylate kinase (pyrH) {Escherichia coli O157:H7 EDL933} (241 letters) Score E Sequences producing significant alignments: (bits) Value b0171 uridylate kinase (pyrH) [2.7.4.-] {Escherichia coli K12-MG... 433 e-123 >b0171 uridylate kinase (pyrH) [2.7.4.-] {Escherichia coli K12-MG1655} Length = 241 Score = 433 bits (1114), Expect = e-123 Identities = 225/241 (93%), Positives = 225/241 (93%) Query: 1 MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKXXXXXXXXXXXXXXXXNL 60 MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIK NL Sbjct: 1 MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKELVELGIQVGVVIGGGNL 60 Query: 61 FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWA 120 FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWA Sbjct: 61 FRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNGVCDSYSWA 120 Query: 121 EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT 180 EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT Sbjct: 121 EAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADVVLKATKVDGVFTADPAKDPT 180 Query: 181 ATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT 240 ATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT Sbjct: 181 ATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLIT 240 Query: 241 E 241 E Sbjct: 241 E 241 Query= Z0183 ribosome releasing factor (frr) {Escherichia coli O157:H7 EDL933} (185 letters) Score E Sequences producing significant alignments: (bits) Value b0172 ribosome releasing factor (frr) {Escherichia coli K12-MG1655} 322 7e-090 >b0172 ribosome releasing factor (frr) {Escherichia coli K12-MG1655} Length = 185 Score = 322 bits (826), Expect = 7e-090 Identities = 171/185 (92%), Positives = 171/185 (92%) Query: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE Sbjct: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60 Query: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE Sbjct: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120 Query: 121 AEQXXXXXXXXXXXXXXKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180 AEQ KVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180 Query: 181 ELMQF 185 ELMQF Sbjct: 181 ELMQF 185 Query= Z0184 putative ATP-binding component of a transport system (yaeM) {Escherichia coli O157:H7 EDL933} (398 letters) Score E Sequences producing significant alignments: (bits) Value b0173 putative ATP-binding component of a transport system (yaeM... 779 0.0 >b0173 putative ATP-binding component of a transport system (yaeM) {Escherichia coli K12-MG1655} Length = 398 Score = 779 bits (2011), Expect = 0.0 Identities = 397/398 (99%), Positives = 398/398 (100%) Query: 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEA 60 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEA Sbjct: 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEA 60 Query: 61 SAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 120 SAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI Sbjct: 61 SAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 120 Query: 121 LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS 180 LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS Sbjct: 121 LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVS 180 Query: 181 ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 240 ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN Sbjct: 181 ILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 240 Query: 241 ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC 300 ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC Sbjct: 241 ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFC 300 Query: 301 KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 360 KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN Sbjct: 301 KLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 360 Query: 361 LSVLEKMDMREPQCVDDVLSVDASAREVARKEVMRLAS 398 LSVLEKMDMREPQCVDDVLSVDA+AREVARKEVMRLAS Sbjct: 361 LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS 398 Query= Z0185 orf, hypothetical protein (yaeS) {Escherichia coli O157:H7 EDL933} (253 letters) Score E Sequences producing significant alignments: (bits) Value b0174 orf, hypothetical protein (yaeS) {Escherichia coli K12-MG1... 513 e-147 >b0174 orf, hypothetical protein (yaeS) {Escherichia coli K12-MG1655} Length = 253 Score = 513 bits (1322), Expect = e-147 Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANN 60 MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANN Sbjct: 1 MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANN 60 Query: 61 GIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRL 120 GIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRL Sbjct: 61 GIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRL 120 Query: 121 QERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQH 180 QERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQH Sbjct: 121 QERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQH 180 Query: 181 VCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE 240 VCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE Sbjct: 181 VCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE 240 Query: 241 RRFGGTEPGDETA 253 RRFGGTEPGDETA Sbjct: 241 RRFGGTEPGDETA 253 Query= Z0186 CDP-diglyceride synthetase (cdsA) {Escherichia coli O157:H7 EDL933} (249 letters) Score E Sequences producing significant alignments: (bits) Value b0175 CDP-diglyceride synthetase (cdsA) [2.7.7.41] {Escherichia ... 479 e-137 b1409 putative phosphatidate cytidiltransferase {Escherichia col... 105 3e-024 >b0175 CDP-diglyceride synthetase (cdsA) [2.7.7.41] {Escherichia coli K12-MG1655} Length = 249 Score = 479 bits (1233), Expect = e-137 Identities = 233/249 (93%), Positives = 233/249 (93%) Query: 1 MLAAWEWGQLSGFTTRSQRVWXXXXXXXXXXXXXXXXPEYHRNIHQPLVEISLWASLGWW 60 MLAAWEWGQLSGFTTRSQRVW PEYHRNIHQPLVEISLWASLGWW Sbjct: 1 MLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWW 60 Query: 61 IVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLY 120 IVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLY Sbjct: 61 IVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLY 120 Query: 121 VMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVA 180 VMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVA Sbjct: 121 VMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVA 180 Query: 181 PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC 240 PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC Sbjct: 181 PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC 240 Query: 241 LLLLVFRTL 249 LLLLVFRTL Sbjct: 241 LLLLVFRTL 249 >b1409 putative phosphatidate cytidiltransferase {Escherichia coli K12-MG1655} Length = 298 Score = 105 bits (262), Expect = 3e-024 Identities = 63/164 (38%), Positives = 90/164 (54%), Gaps = 24/164 (14%) Query: 91 TIVPFFWGM------LALRAWHY---DENHYSGAIWLLYVMILVWGADSGAYMFGKLFGK 141 T+ FWG L+ AW N GA+ +L+++ L D Y++GK G+ Sbjct: 134 TVSAIFWGWIMTVFALSHAAWLLMLPTTNIQGGALLVLFLLALTESNDIAQYLWGKSCGR 193 Query: 142 HKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVL---- 197 K+ PKVSPGKT +G +GG+ T + A+L + P+ + ++ A LA +L Sbjct: 194 RKVVPKVSPGKTLEGLMGGVITIMI--------ASLIIGPLLTPLNTLQALLAGLLIGIS 245 Query: 198 ---GDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVF 238 GD+ S KR+ G+KDSG L+PGHGG+LDRIDSL PVF Sbjct: 246 GFCGDVVMSAIKRDIGVKDSGKLLPGHGGLLDRIDSLIFTAPVF 289 Query= Z0187 orf, hypothetical protein (yaeL) {Escherichia coli O157:H7 EDL933} (450 letters) Score E Sequences producing significant alignments: (bits) Value b0176 orf, hypothetical protein (yaeL) {Escherichia coli K12-MG1... 831 0.0 >b0176 orf, hypothetical protein (yaeL) {Escherichia coli K12-MG1655} Length = 450 Score = 831 bits (2146), Expect = 0.0 Identities = 422/450 (93%), Positives = 422/450 (93%) Query: 1 MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV 60 MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV Sbjct: 1 MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGFGKALWRRTDKLGTEYV 60 Query: 61 IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWLXX 120 IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWL Sbjct: 61 IALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIAAGPVANFIFAIFAYWLVF 120 Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI 180 PGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI Sbjct: 121 IIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI 180 Query: 181 TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL 240 TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL Sbjct: 181 TVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPRGPQIEPVLENVQPNSAASKAGL 240 Query: 241 QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG 300 QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG Sbjct: 241 QAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEIERQGSPLSLTLIPESKPGNGKAIG 300 Query: 301 FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG 360 FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG Sbjct: 301 FVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKTWQLMKLTVSMLGKLITGDVKLNNLSG 360 Query: 361 PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS 420 PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS Sbjct: 361 PISIAKGAGMTAELGVVYYLPFLALISVNLGIINLFPLPVLDGGHLLFLAIEKIKGGPVS 420 Query: 421 ERVQDFCYRIGSILLVLLMGLALFNDFSRL 450 ERVQDFCYRIGSILLVLLMGLALFNDFSRL Sbjct: 421 ERVQDFCYRIGSILLVLLMGLALFNDFSRL 450 Query= Z0188 orf, hypothetical protein (yaeT) {Escherichia coli O157:H7 EDL933} (810 letters) Score E Sequences producing significant alignments: (bits) Value b0177 orf, hypothetical protein (yaeT) {Escherichia coli K12-MG1... 1652 0.0 >b0177 orf, hypothetical protein (yaeT) {Escherichia coli K12-MG1655} Length = 810 Score = 1652 bits (4279), Expect = 0.0 Identities = 810/810 (100%), Positives = 810/810 (100%) Query: 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS 60 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS Sbjct: 1 MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDIS 60 Query: 61 NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR 120 NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR Sbjct: 61 NTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVR 120 Query: 121 VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI 180 VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI Sbjct: 121 VGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI 180 Query: 181 NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240 NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI Sbjct: 181 NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI 240 Query: 241 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTK 300 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTK Sbjct: 241 DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTK 300 Query: 301 VTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS 360 VTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS Sbjct: 301 VTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTS 360 Query: 361 KDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE 420 KDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE Sbjct: 361 KDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE 420 Query: 421 RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV 480 RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV Sbjct: 421 RNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV 480 Query: 481 DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQ 540 DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQ Sbjct: 481 DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQ 540 Query: 541 PQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVT 600 PQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVT Sbjct: 541 PQVAMWRYLYSMGEHPSTSDQDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVT 600 Query: 601 IPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTV 660 IPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTV Sbjct: 601 IPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTV 660 Query: 661 RGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT 720 RGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT Sbjct: 661 RGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT 720 Query: 721 PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPL 780 PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPL Sbjct: 721 PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPL 780 Query: 781 GPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 810 GPLVFSYAQPFKKYDGDKAEQFQFNIGKTW Sbjct: 781 GPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 810 Query= Z0190 histone-like protein, located in outer membrane or (hlpA) {Escherichia coli O157:H7 EDL933} (161 letters) Score E Sequences producing significant alignments: (bits) Value b0178 histone-like protein, located in outer membrane or nucleoi... 268 1e-073 >b0178 histone-like protein, located in outer membrane or nucleoid (hlpA) {Escherichia coli K12-MG1655} Length = 161 Score = 268 bits (685), Expect = 1e-073 Identities = 144/161 (89%), Positives = 144/161 (89%) Query: 1 MKKWXXXXXXXXXXXXXXXXXDKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRM 60 MKKW DKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRM Sbjct: 1 MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRM 60 Query: 61 ETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI 120 ETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI Sbjct: 61 ETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRI 120 Query: 121 QTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK 161 QTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK Sbjct: 121 QTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK 161 Query= Z0191 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase third step of endotoxin (lipidA) (lpxD) {Escherichia coli O157:H7 EDL933} (341 letters) Score E Sequences producing significant alignments: (bits) Value b0179 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase... 657 0.0 b0181 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynt... 68 1e-012 b3730 N-acetyl glucosamine-1-phosphate uridyltransferase (glmU) ... 52 4e-008 >b0179 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis (lpxD) [2.3.1.-] {Escherichia coli K12-MG1655} Length = 341 Score = 657 bits (1695), Expect = 0.0 Identities = 330/341 (96%), Positives = 331/341 (97%) Query: 1 MPSIRXXXXXXXXXXELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVV 60 MPSIR ELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVV Sbjct: 1 MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVNPKYREHLGLCQASAVV 60 Query: 61 MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGA 120 MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGA Sbjct: 61 MTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAPSAVIDATAKLGNNVSIGA 120 Query: 121 NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA 180 NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA Sbjct: 121 NAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVVGA 180 Query: 181 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTVIGNGVIIDNQCQIAHN 240 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDT+IGNGVIIDNQCQIAHN Sbjct: 181 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDDTIIGNGVIIDNQCQIAHN 240 Query: 241 VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV 300 VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV Sbjct: 241 VVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITEPGV 300 Query: 301 YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD 341 YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD Sbjct: 301 YSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLERKVNQQD 341 >b0181 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis (lpxA) [2.3.1.129] {Escherichia coli K12-MG1655} Length = 262 Score = 67.8 bits (164), Expect = 1e-012 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 13/187 (6%) Query: 122 AVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQ-NCLIQSGTVVGA 180 A++E G +G N IG C VG + +IG G+ L ++V + +IG+ N + Q ++ Sbjct: 12 AIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI--- 68 Query: 181 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDD---TVIGNGVIIDNQCQI 237 G N + P RV IGDR I TI RG + T +G+ ++ I Sbjct: 69 ---GEVNQDLKYAGEPT--RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI 123 Query: 238 AHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITE 297 AH+ +G+ +A +AG + + + +IGG + ++ I V V G V + + Sbjct: 124 AHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQDV-P 182 Query: 298 PGVYSSG 304 P V + G Sbjct: 183 PYVIAQG 189 >b3730 N-acetyl glucosamine-1-phosphate uridyltransferase (glmU) {Escherichia coli K12-MG1655} Length = 456 Score = 52.4 bits (124), Expect = 4e-008 Identities = 47/159 (29%), Positives = 70/159 (44%), Gaps = 22/159 (13%) Query: 113 GNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQNCLI 172 G +V I N +IE V LG V IG GC + KNS IG + + T+ + + C I Sbjct: 269 GRDVEIDTNVIIEGNVTLGHRVKIGTGCVI-KNSVIGDDCEI-SPYTVVEDANLAAACTI 326 Query: 173 QSGTVV--GADGFGYANDRGNWVKIPQ--------------IGRVIIGDRVEIGACT--- 213 + GA+ A+ GN+V++ + +G IGD V IGA T Sbjct: 327 GPFARLRPGAELLEGAH-VGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITC 385 Query: 214 TIDRGALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGG 252 D T+IG+ V + + Q+ V +G +A G Sbjct: 386 NYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIAAG 424 Query= Z0192 (3R)-hydroxymyristol acyl carrier protein dehydratase (fabZ) {Escherichia coli O157:H7 EDL933} (151 letters) Score E Sequences producing significant alignments: (bits) Value b0180 (3R)-hydroxymyristol acyl carrier protein dehydratase (fab... 303 3e-084 >b0180 (3R)-hydroxymyristol acyl carrier protein dehydratase (fabZ) {Escherichia coli K12-MG1655} Length = 151 Score = 303 bits (777), Expect = 3e-084 Identities = 151/151 (100%), Positives = 151/151 (100%) Query: 1 MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI 60 MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI Sbjct: 1 MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNVSVNEPFFQGHFPGKPI 60 Query: 61 FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT 120 FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT Sbjct: 61 FPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFKRPVVPGDQMIMEVTFEKT 120 Query: 121 RRGLTRFKGVALVDGKVVCEATMMCARSREA 151 RRGLTRFKGVALVDGKVVCEATMMCARSREA Sbjct: 121 RRGLTRFKGVALVDGKVVCEATMMCARSREA 151 Query= Z0193 UDP-N-acetylglucosamine acetyltransferase lipid A biosynthesis (lpxA) {Escherichia coli O157:H7 EDL933} (262 letters) Score E Sequences producing significant alignments: (bits) Value b0181 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynt... 526 e-151 b0179 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase... 67 9e-013 >b0181 UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis (lpxA) [2.3.1.129] {Escherichia coli K12-MG1655} Length = 262 Score = 526 bits (1356), Expect = e-151 Identities = 261/262 (99%), Positives = 261/262 (99%) Query: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN 60 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN Sbjct: 1 MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDN 60 Query: 61 EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMIN 120 EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMIN Sbjct: 61 EIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMIN 120 Query: 121 AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMAAVHQFCIIGAHVMVGGCSGVAQD 180 AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGM AVHQFCIIGAHVMVGGCSGVAQD Sbjct: 121 AHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVHQFCIIGAHVMVGGCSGVAQD 180 Query: 181 VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELA 240 VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELA Sbjct: 181 VPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELA 240 Query: 241 ETYPEVKAFTDFFARSTRGLIR 262 ETYPEVKAFTDFFARSTRGLIR Sbjct: 241 ETYPEVKAFTDFFARSTRGLIR 262 >b0179 UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; third step of endotoxin (lipidA) synthesis (lpxD) [2.3.1.-] {Escherichia coli K12-MG1655} Length = 341 Score = 67.4 bits (163), Expect = 9e-013 Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 13/187 (6%) Query: 12 AIVEEGASIGANAHIGPFCIVGPHVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASI--- 68 A++E G +G N IG C VG + +IG G+ L ++V + +IG+ N + Q ++ Sbjct: 122 AVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTIYHEIQIGQ-NCLIQSGTVVGA 180 Query: 69 ---GEVNQDLKYAGEPT--RVEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHI 123 G N + P RV IGDR I TI RG + T +G+ ++ I Sbjct: 181 DGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRGALDD---TIIGNGVIIDNQCQI 237 Query: 124 AHDCTVGNRCILANNATLAGHVSVDDFAIIGGMAAVHQFCIIGAHVMVGGCSGVAQDV-P 182 AH+ +G+ +A +AG + + + +IGG + ++ I V V G V + + Sbjct: 238 AHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGHMEICDKVTVTGMGMVMRPITE 297 Query: 183 PYVIAQG 189 P V + G Sbjct: 298 PGVYSSG 304 Query= Z0194 tetraacyldisaccharide-1-P lipid A biosynthesis, penultimate step (lpxB) {Escherichia coli O157:H7 EDL933} (382 letters) Score E Sequences producing significant alignments: (bits) Value b0182 tetraacyldisaccharide-1-P; lipid A biosynthesis, penultima... 704 0.0 >b0182 tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step (lpxB) [2.4.1.182] {Escherichia coli K12-MG1655} Length = 382 Score = 704 bits (1817), Expect = 0.0 Identities = 353/368 (95%), Positives = 355/368 (96%) Query: 1 MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGPRMQAEGCEAWYEMEEL 60 MTEQRPLTIALVAGETSGDILGAGLIRALKE VPNARFVGVAGPRMQAEGCEAWYEMEEL Sbjct: 1 MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGPRMQAEGCEAWYEMEEL 60 Query: 61 AVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNIILEGNLKKQGIKTIHY 120 AVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNI LEGNLKKQGIKTIHY Sbjct: 61 AVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDFNITLEGNLKKQGIKTIHY 120 Query: 121 VSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNS 180 VSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKN+ Sbjct: 121 VSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVPCRFIGHTMADAMPLDPDKNA 180 Query: 181 ARDVLGIPYDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQ 240 ARDVLGIP+DAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQ Sbjct: 181 ARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQLLRQTYPDLEIVVPLVNAKRREQ 240 Query: 241 FERIKAAVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF 300 FERIKA VAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF Sbjct: 241 FERIKAEVAPDLSVHLLDGMGREAMVASDAALLASGTAALECMLAKCPMVVGYRMKPFTF 300 Query: 301 WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKXXXXXXXXXXNGKTSHAMHDTFRE 360 WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQK NGKTSHAMHDTFRE Sbjct: 301 WLAKRLVKTDYVSLPNLLAGRELVKELLQEECEPQKLAAALLPLLANGKTSHAMHDTFRE 360 Query: 361 LHQQIRCN 368 LHQQIRCN Sbjct: 361 LHQQIRCN 368 Query= Z0195 RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) {Escherichia coli O157:H7 EDL933} (198 letters) Score E Sequences producing significant alignments: (bits) Value b0183 RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) [3.1.26.... 389 e-110 >b0183 RNAse HII, degrades RNA of DNA-RNA hybrids (rnhB) [3.1.26.4] {Escherichia coli K12-MG1655} Length = 198 Score = 389 bits (999), Expect = e-110 Identities = 197/198 (99%), Positives = 197/198 (99%) Query: 1 MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALCEE 60 MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLAL EE Sbjct: 1 MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLSEKRRLALYEE 60 Query: 61 IKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAM 120 IKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAM Sbjct: 61 IKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAPEYVLIDGNRCPKLPMPAM 120 Query: 121 AVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGAT 180 AVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGAT Sbjct: 121 AVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFAQHKGYPTAFHLEKLAEHGAT 180 Query: 181 EHHRRSFGPVKRALGLAS 198 EHHRRSFGPVKRALGLAS Sbjct: 181 EHHRRSFGPVKRALGLAS 198 Query= Z0196 DNA polymerase III, alpha subunit (dnaE) {Escherichia coli O157:H7 EDL933} (1160 letters) Score E Sequences producing significant alignments: (bits) Value b0184 DNA polymerase III, alpha subunit (dnaE) [2.7.7.7] {Escher... 2278 0.0 >b0184 DNA polymerase III, alpha subunit (dnaE) [2.7.7.7] {Escherichia coli K12-MG1655} Length = 1160 Score = 2278 bits (5904), Expect = 0.0 Identities = 1143/1160 (98%), Positives = 1144/1160 (98%) Query: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA Sbjct: 1 MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA 60 Query: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW Sbjct: 61 GIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW 120 Query: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES Sbjct: 121 LIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEES 180 Query: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM Sbjct: 181 YLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM 240 Query: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL Sbjct: 241 RSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL 300 Query: 301 EERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 EERLAFLFPDEEER+KRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP Sbjct: 301 EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP 360 Query: 361 GRGSGAGSLVAYALKITXXXXXXXXXXXXXXXNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 GRGSGAGSLVAYALKIT NPERVSMPDFDVDFCMEKRDQVIEHVAD Sbjct: 361 GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD 420 Query: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ Sbjct: 421 MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQ 480 Query: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ Sbjct: 481 LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQ 540 Query: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML Sbjct: 541 FDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML 600 Query: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE Sbjct: 601 QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE 660 Query: 661 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM 720 ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM Sbjct: 661