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Monday
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Wednesday
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Friday
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2: Scenario 1: Parsing massive
output
Notes: Genome comparison
Questionnaire |
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4: Scenario 1: Parsing massive
output
Notes - Parsing
Notes - Regular expressions
Questionnaire |
| 7:Labor Day (No Class) |
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9: Scenario 1: Parsing massive
output
Problem
Set (Mol Bio): (focus on 2, 5, 9)
Problem
Set (Perl): (focus on 2, 4, 5) |
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11: Scenario 1: Parsing massive
output
Problems
PS1M9 & PS1P5
Scenario
2: Computer simulations
Notes: Regulatory
proteins
Questionnaire |
14: Scenario 2: Computer simulations
Notes - Loops
and arrays
Loops &
arrays Questionnaire
Notes - Implementing
a simulation
Implementation Questionnaire |
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16: Scenario 2: Computer simulations
Scenario 2: Simulation
Problem
Set 2M: 2
Problem
Set 2P: 1, 5, 6, 8 |
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18: Scenario 2: Computer simulations
Continue problem sets
Continue discussion of notes
Questionnaire |
21: GENERAL REVIEW
(Bring questions)
Questionnaire
Exam 1 available after class |
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23: NO CLASS
(but consultations highly
encouraged!) |
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25: Scenario 3:
Sequence alignment
Introduction: The
story
Introduction
(Exam 1 due)
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28: Scenario 3:
Sequence alignment
Notes: DNA sequence alignment
Questionnaire |
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30:
Scenario 3:
Sequence alignment
Notes: BlastN and 2-D arrays
Notes: Scoring and protein alignment
Questionnaire
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