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Monday
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Wednesday
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Friday
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3: Labor Day (No Class) |
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5: Introduction to Perl
Notes: Part #2
Questionnaire
Intro to Molecular
Biology
Notes: Strategies of Life
Notes: Protein
Notes: Flow of Information
Questionnaire: Strategies & Protein
Questionnaire: Flow of Information |
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7: Intro to Molecular Biology
Notes: Strategies of Life
Notes: Protein
Notes:
Flow of Information
Questionnaire: Strategies & Protein
Questionnaire: Flow of Information |
10: Intro to Molec Biol & Perl
Problem
Set (Mol Bio):
(focus on B2, B10, C4, C6, D4, D5)
Problem
Set (Perl) |
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12: Scenario 1: Parsing massive
output
Notes: Genome comparison
Questionnaire |
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14: Scenario 1: Parsing massive
output
Notes - Parsing
Notes - Regular expressions
Questionnaire |
17: Scenario 1: Parsing massive
output
Problem
Set (Mol Bio): (focus on 2, 5, 9)
Problem
Set (Perl): (focus on 2, 4, 5) |
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19:Scenario 1: Parsing massive
output
Problems
PS1M9 & PS1P5
Scenario
2: Computer simulations
Notes: Regulatory
proteins
Questionnaire |
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21: Scenario 2: Computer simulations
Notes - Loops
and arrays
Loops &
arrays Questionnaire
Notes - Implementing
a simulation
Implementation Questionnaire |
24: Scenario 2: Computer simulations
Scenario 2: Simulation
Problem
Set 2M: 2
Problem
Set 2P: 1, 5, 6, 8 |
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26: Scenario 2: Computer simulations
Continue problem sets
Continue discussion of notes
Questionnaire |
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28: GENERAL REVIEW
(Bring questions)
Questionnaire
Exam 1 available after class
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October 1: NO CLASS
(but consultations highly
encouraged!) |
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October 3: Scenario 3:
Sequence alignment
Introduction: The
story
Introduction
(Exam 1 due)
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October 5: Scenario 3:
Sequence alignment
Notes: DNA sequence alignment
Questionnaire |