BNFO 601 
Integrated Bioinformatics
Fall 2011

         August September October November December
Monday
  
Wednesday
  
Friday
3: Scenario 3: Sequence alignment
       Introduction: The story
       Introduction 
       (Exam 1 due)
  5: Scenario 3: Sequence alignment
    Notes: DNA sequence alignment
    Questionnaire		   7: Scenario 3: Sequence alignment
    Notes: BlastN and 2-D arrays
    Notes: Scoring and protein alignment
    Questionnaire
10: Scenario 3: Sequence alignment
     Problem Set 3: 5, 9, 11
     What's wrong with Blast?		   12: Scenario 4: Position-specific Scoring Matrices   14: Scenario 4: PSSMs
17: Scenario 4: PSSMs   19: Scenario 4: PSSMs
      Problem Set 4: 1, 4, 7, 11		   21: NO CLASSES - Reading Day
24: Scenario 7: Cluster analysis   26: Scenario 7: Cluster analysis   28: Scenario 7: Cluster analysis
 
31: Scenario 7: Cluster analysis   November 2:  Scenario 7: Cluster analysis    November 4: GENERAL REVIEW
      (Bring questions)
      Questionnaire
      Exam 2 available after class