BNFO 601 
Integrated Bioinformatics
Fall 2012

         August September October November December


Monday
 
Wednesday
 
Friday
1: NO CLASS
     (but consultations highly encouraged!)
  3: Scenario 3: Sequence alignment
       Introduction: The story
       Introduction 
       (Exam 1 due)
  5: Scenario 3: Sequence alignment
    Notes: DNA sequence alignment
    Questionnaire
8: Scenario 3: Sequence alignment
     Problem Set 3: 5, 9, 11
     What's wrong with Blast?
  10: Scenario 4: Position-specific Scoring Matrices   12: Scenario 4: PSSMs
15: Scenario 4: PSSMs   17: Scenario 4: PSSMs
      Problem Set 4: 1, 4, 7, 11
  19: NO CLASSES - Reading Day
22: Scenario 7: Cluster analysis   24: Scenario 7: Cluster analysis   26: Scenario 7: Cluster analysis
 
29: Scenario 7: Cluster analysis   31:  Scenario 7: Cluster analysis
Scary Stories with Paul:
Tales from beyond the Script
   November 2: GENERAL REVIEW
      (Bring questions)
      Questionnaire
      Exam 2 available after class
Last day to withdraw