| BNFO 601 |
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Fall 2011
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Introduction: The story Introduction (Exam 1 due) |
5: Scenario 3:
Sequence alignment Notes: DNA sequence alignment Questionnaire |
7:
Scenario 3:
Sequence alignment Notes: BlastN and 2-D arrays Notes: Scoring and protein alignment Questionnaire |
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| 10: Scenario 3:
Sequence alignment Problem Set 3: 5, 9, 11 What's wrong with Blast? |
12: Scenario 4: Position-specific Scoring Matrices | 14: Scenario 4: PSSMs | ||
| 17: Scenario 4: PSSMs | 19: Scenario 4: PSSMs Problem Set 4: 1, 4, 7, 11 |
21: NO CLASSES - Reading Day |
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| 24: Scenario 7: Cluster analysis | 26: Scenario 7: Cluster analysis | 28: Scenario 7: Cluster analysis
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| 31: Scenario 7: Cluster analysis | November 2: Scenario 7: Cluster analysis | November 4: GENERAL REVIEW (Bring questions) Questionnaire Exam 2 available after class |