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Monday
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Wednesday
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Friday
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Nov. 2: Scenario 7: Cluster analysis |
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Nov. 4: GENERAL REVIEW
(Bring questions)
Questionnaire
Exam 2 available after class |
Nov. 7: NO CLASS
(but consultations highly
encouraged!)
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9: Scenario 6: Protein threading
Introduction: The
Story
Notes: Protein
overexpression
Notes: Resources
for protein threading
Questionnaire: (HTML)
(Exam 2 due)
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11: Scenario 6: Protein threading
Notes: Threading
program and beyond
Questionnaire: (HTML) |
14: Scenario 6: Protein threading
Notes: (Same
as Monday's)
Questionnaire: (HTML)
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16: Scenario 6: Protein threading
Problem
Set 6: Focus on 7.4 and 7.3 |
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18: Scenario 5: Metabolic modeling
Pre-modeling Questionnaire
Introduction: The
story
Notes: Introduction
to metabolic modeling
Questionnaire |
21: Scenario 5: Metabolic modeling
Presentation: Rates of catalyzed reactions
Article: Eisenthal
& Cornish-Bowdin (1998)
Notes: Tour of article and program
Problem
Set 5: 3 and maybe 11
Questionnaire |
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23: Scenario 5: Metabolic modeling
Notes: Fixing the modeling program
Problem
Set 5: 1 and 13
Questionnaire |
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25: VCU CLOSED
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28: Scenario 5: Metabolic modeling
Notes: Introducing inhibition into the
model
Problem
Set 5: 6 and maybe 10
Questionnaire |
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30: Scenario 5: Metabolic modeling
Wrap up of modeling glycolysis
Problem Set 5: 1, 3, 6,
10, 11, 13
Questionnaire |
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Dec. 2: Scenario 8: Markov analysis
Notes: Detecting
pathogenicity islands
Article: Karlin
(2001)
Questionnaire |